EWM24461.1, cds6212 (CDS) Nannochloropsis gaditana

Overview
NameEWM24461.1
Unique Namecds6212
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:15903..16014 +
Alignment locationCM002468.1:16110..16243 +
Alignment locationCM002468.1:16510..16580 +
Alignment locationCM002468.1:16731..16977 +
Alignment locationCM002468.1:17189..17503 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24461.1
ProductDNA-binding SAP
Orig transcript idgnl|cribi|Naga_100301g1.10491.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:15903..16014 +
CM002468.1supercontigCM002468.1:16110..16243 +
CM002468.1supercontigCM002468.1:16510..16580 +
CM002468.1supercontigCM002468.1:16731..16977 +
CM002468.1supercontigCM002468.1:17189..17503 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Homology
[Close]
BLAST of EWM24461.1 vs. NCBI_GenBank
Match: gi|585105928|gb|EWM24461.1| (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 573.163 bits (1476), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0 
Query:    1 MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEVVRLGAQEGEGGRPARGVLGRGEYEKVAVLQRASSLQPASSSQGAAERSIERRNTSGSHQTGSSQPPLLDASPPLPTAPSREAGQDMEDLYVSSLPDYPTDLPRHKISKRHVGWDGALEGYTLADGTYVGIKVRV 292
            MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEVVRLGAQEGEGGRPARGVLGRGEYEKVAVLQRASSLQPASSSQGAAERSIERRNTSGSHQTGSSQPPLLDASPPLPTAPSREAGQDMEDLYVSSLPDYPTDLPRHKISKRHVGWDGALEGYTLADGTYVGIKVRV
Sbjct:    1 MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEVVRLGAQEGEGGRPARGVLGRGEYEKVAVLQRASSLQPASSSQGAAERSIERRNTSGSHQTGSSQPPLLDASPPLPTAPSREAGQDMEDLYVSSLPDYPTDLPRHKISKRHVGWDGALEGYTLADGTYVGIKVRV 292
[Close]
BLAST of EWM24461.1 vs. NCBI_GenBank
Match: gi|553193433|ref|XP_005855773.1| (hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526] >gi|422293277|gb|EKU20577.1| hypothetical protein NGA_0236620 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 308.916 bits (790), Expect = 6.548e-104
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 
Query:    1 MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEV 158
            MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEV
Sbjct:    1 MASYLVLLLLVAALAASAATRLTRGSAFLHPAVYRRRARPNSPQWHSEVRPARTAWIRTAVSLSLSLRVHDLDGLTVDQLKDALRRRGLPLSGRKVDLLSRLRADIAQGQREDRPGWMLNLEGEEEGGLVGQGVEGKDEEEGEETLEDRLVAALAAEV 158
The following BLAST results are available for this feature:
BLAST of EWM24461.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105928|gb|EWM24461.1|0.000e+0100.00DNA-binding SAP [Nannochloropsis gaditana][more]
gi|553193433|ref|XP_005855773.1|6.548e-104100.00hypothetical protein NGA_0236620 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6227rna6227Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications