rna6220, rna6220 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6220
Unique Name	rna6220
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	861
Alignment location	CM002467.1:875908..876985 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF543
Orig transcript id	gnl\|cribi\|Naga_100302g2.813.mrna
Orig protein id	gnl\|cribi\|Naga_100302g2.813
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:875908..876985 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100302g2	gene6009	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6220	rna6220-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24469.1	cds6205	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:875908..876985-
coding sequence from alignment at CM002467.1:875908..876985-

mRNA sequence

>rna6220 ID=rna6220|Name=rna6220|organism=Nannochloropsis gaditana|type=mRNA|length=861bp
ATGAATATATACTTCTTTCAATGGCATTTTCAGCGCCGTAGCCTGGCTCC
GACGACAGTCGTATGGGCAACAAAGAGAGTCGGCTGGTTCAAACCCCTTG
AAAGAAAAGTCTCCCACCTTAGCTCCTCATCGACCTGCTCGCCTTGTCTT
TCCTGCTTCAGCCACCCGCGAGGAAAACAGGCACATCGAAAGACACGTCG
CCAGTTTGACAGTCGTGAGCACGCGTGCCGAGGGGTTGACAACATTTTTC
AAGCTTACAGGGACGGTTTGCTTCAATTCTACTTAGCCGCTTGCCAGGCA
CCAGAATACCTGAAGCTAAACTCCGATGTACCGTGCATCCTTGCGCGCAG
CACGTCAGGGGGGAGCTTTCTGTCTCCGGTCGTCTCGCACAGGGGCCACA
CTCTCCATGCGGACCTTCCCCTCCGTCCCTTCTTCCCACTCCCCTTCTTT
CACCACCCTTGTGGAGAGGCTCTGGTCGCGTGTGCCGAAAGGCTTCGGGC
AATTTTATCCCAAGGAGGGAGGATCTGCGAGCGAGGAAGCCAATGGAAAA
GGCGGGGACGGAGCGCGGAAAGAGGACAAGGGAGACGGCCCTCACGCCAA
CCAGCAGCAGCAACAGCACCAAAAAGGCGGAGGGGGTGGAGGGGGTGGGG
GGGGCGGAGGCGGCTTTGGAGGACCTGGAGGTGGGGGCCCTGCGGACTCG
AACGGGCGGCTGCTGACGTCTATCATAGGGTTGACGGCGCTCGGTCTCCT
ATTATCCTCCGAGCCCGCCGGGAAGGAAATATCCTGGCAGGAGTTTGTGA
CTCAGGTCCTGGAGTCCGGGGAGGTGGAGCGCATCATTGTCAGCAACCGG
AACGTGGCTAA

protein sequence of rna6220

>rna6220-protein ID=rna6220-protein|Name=rna6220|organism=Nannochloropsis gaditana|type=polypeptide|length=98bp
MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVL
ARKSGLMEREGGERGTRMHGRSEDRLWSLIPCGMAASRPRETDIDRRG

mRNA from alignment at CM002467.1:875908..876985-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6220 ID=rna6220|Name=rna6220|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp|location=Sequence derived from alignment at CM002467.1:875908..876985- (Nannochloropsis gaditana)
ATGAAAGATAGCTCCGTACCGGCGCCTGTCATGGCAGGCAAAGTACCCAG
CGAGCTGTACATCTCTGAGAAGTGGGACAAGTGCCTGGAGAGGTAAGAAT
CGTATTGAGGAGGTCATGTTCGAGCATTATGAGCTCCCCCGTGTAGACAG
AATAGGCTTCAATTAAACAGGAGAGGGAAGTAGAGGAGATATGTTGGAGA
GTTTTACGCCGTTGCCCGAAGTCGCTCTCCAGAGTTGTGGGAATACATCA
CGAAAAATGCAGATAGGGACGAGACATTAACCGGTCACACTATGTGATCT
CTTATATAGTGTGAAACCATGCGCGGAAGTTGAGGCACCATGCCGGTGTT
ATTTGCGACTTGACATGGAGAGCGGTGGGGATAGGATGGCGTCTTGATAG
GATGTGTTTTTTTGAGGATGGCATAGAGCCCTCCAAATGCAGAGGTGGGA
GACGTATCGAGGGTGGCATTAGAGAGCGTACAGGGCGTTGTACCCCCGTA
ATCATTCCCTGGCTGATTGAGAAGTGCCCTTCTACCGTTCCTCTCGCCGT
CCATTTCGCCTCAAGCTTACCTGTCTCCTCGCGTCCCTCCTGTCTTTCCC
ACCCAGAACCGTCGTTAATGTGGCAAGCGGCGCAGTGCTCGGACTTCTGT
CCGGCTTCGTCCTAGCACGTAAGTGAGATATCTGTCTGCAACAGATTGCC
CCTCCCTGTTGTCGCTGTCGCTTGAGCCCACGTATGTCCTATTTCTAACC
TTACCTGTGGTCTTTGCGCAGGCACGGGTCACGGCCGGAGTCTCGTCGCC
GCCGTGGGGGTGGGCTGTGGTGTGGGAGCGTCGTGGGTCAGATGCGCACA
GGACTTCGAAGAAAAGGAAAAGGCGTAGTGAGGGGGAGGTAATGTGGAAA
AAGGCGAGGGCGAGGGCCTTGATGTATACATTCAGGGAAGAGCGGACTGA
TGGAGAGGGAAGGGGGTGAGAGAGGGACGCGGATGCATGGACGCTCAGAG
GATAGGCTGTGGAGTTTGATCCCTTGTGGTATGGCAGCTAGCCGGCCTAG
AGAGACTGATATAGATAGAAGGGGCTAG

Coding sequence (CDS) from alignment at CM002467.1:875908..876985-

>rna6220 ID=rna6220|Name=rna6220|organism=Nannochloropsis gaditana|type=CDS|length=891bp|location=Sequence derived from alignment at CM002467.1:875908..876985- (Nannochloropsis gaditana)
GGAAGAGCGGACTGATGGAGAGGGAAGGGGGTGAGAGAGGGACGCGGATG
CATGGACGCTCAGAGGATAGGCTGTGGAGTTTGATCCCTTGTGGTATGGC
AGCTAGCCGGCCTAGAGAGACTGATATAGATAGAAGGGGCTAGAACCGTC
GTTAATGTGGCAAGCGGCGCAGTGCTCGGACTTCTGTCCGGCTTCGTCCT
AGCACATGAAAGATAGCTCCGTACCGGCGCCTGTCATGGCAGGCAAAGTA
CCCAGCGAGCTGTACATCTCTGAGAAGTGGGACAAGTGCCTGGAGAGGGA
AGAGCGGACTGATGGAGAGGGAAGGGGGTGAGAGAGGGACGCGGATGCAT
GGACGCTCAGAGGATAGGCTGTGGAGTTTGATCCCTTGTGGTATGGCAGC
TAGCCGGCCTAGAGAGACTGATATAGATAGAAGGGGCTAGAACCGTCGTT
AATGTGGCAAGCGGCGCAGTGCTCGGACTTCTGTCCGGCTTCGTCCTAGC
ACATGAAAGATAGCTCCGTACCGGCGCCTGTCATGGCAGGCAAAGTACCC
AGCGAGCTGTACATCTCTGAGAAGTGGGACAAGTGCCTGGAGAGGGAAGA
GCGGACTGATGGAGAGGGAAGGGGGTGAGAGAGGGACGCGGATGCATGGA
CGCTCAGAGGATAGGCTGTGGAGTTTGATCCCTTGTGGTATGGCAGCTAG
CCGGCCTAGAGAGACTGATATAGATAGAAGGGGCTAGAACCGTCGTTAAT
GTGGCAAGCGGCGCAGTGCTCGGACTTCTGTCCGGCTTCGTCCTAGCACA
TGAAAGATAGCTCCGTACCGGCGCCTGTCATGGCAGGCAAAGTACCCAGC
GAGCTGTACATCTCTGAGAAGTGGGACAAGTGCCTGGAGAG

Synonyms

Publications