EWM24469.1, cds6205 (CDS) Nannochloropsis gaditana

Overview
NameEWM24469.1
Unique Namecds6205
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:876894..876985 -
Alignment locationCM002467.1:876318..876379 -
Alignment locationCM002467.1:875908..876050 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24469.1
ProductProtein of unknown function DUF543
Orig transcript idgnl|cribi|Naga_100302g2.813.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:876894..876985 -
CM002467.1supercontigCM002467.1:876318..876379 -
CM002467.1supercontigCM002467.1:875908..876050 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007512DUF543
Homology
BLAST of EWM24469.1 vs. NCBI_GenBank
Match: gi|585105937|gb|EWM24469.1| (Protein of unknown function DUF543 [Nannochloropsis gaditana])

HSP 1 Score: 197.978 bits (502), Expect = 3.218e-64
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARKSGLMEREGGERGTRMHGRSEDRLWSLIPCGMAASRPRETDIDRRG 98
            MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARKSGLMEREGGERGTRMHGRSEDRLWSLIPCGMAASRPRETDIDRRG
Sbjct:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARKSGLMEREGGERGTRMHGRSEDRLWSLIPCGMAASRPRETDIDRRG 98          
BLAST of EWM24469.1 vs. NCBI_GenBank
Match: gi|553184800|ref|XP_005854147.1| (hypothetical protein NGA_0198301 [Nannochloropsis gaditana CCMP526] >gi|553185547|ref|XP_005854265.1| hypothetical protein NGA_0198302 [Nannochloropsis gaditana CCMP526] >gi|422294793|gb|EKU22093.1| hypothetical protein NGA_0198302 [Nannochloropsis gaditana CCMP526] >gi|422294909|gb|EKU22209.1| hypothetical protein NGA_0198301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 105.531 bits (262), Expect = 7.555e-28
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0
Query:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLAR 52
            MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLAR
Sbjct:    1 MKDSSVPAPVMAGKVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLAR 52          
BLAST of EWM24469.1 vs. NCBI_GenBank
Match: gi|298710499|emb|CBJ25563.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 53.9138 bits (128), Expect = 1.370e-7
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 0
Query:   14 KVPSELYISEKWDKCLERTVVNVASGAVLGLLSGFVLARKSGL 56
             VPSE  ISEKWD CLERTV+N  +G V   L+G VL R  G+
Sbjct:    8 NVPSEFKISEKWDVCLERTVINFGAGVVAAGLAGVVLTRSPGM 50          
The following BLAST results are available for this feature:
BLAST of EWM24469.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105937|gb|EWM24469.1|3.218e-64100.00Protein of unknown function DUF543 [Nannochloropsi... [more]
gi|553184800|ref|XP_005854147.1|7.555e-28100.00hypothetical protein NGA_0198301 [Nannochloropsis ... [more]
gi|298710499|emb|CBJ25563.1|1.370e-758.14conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6220rna6220Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications