rna6213, rna6213 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6213
Unique Name	rna6213
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1166
Alignment location	CM002467.1:861157..863012 +

Link to JBrowse

Properties


Property Name	Value
Product	large subunit ribosomal protein l10e
Orig transcript id	gnl\|cribi\|Naga_100239g3.3873.mrna
Orig protein id	gnl\|cribi\|Naga_100239g3.3873
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:861157..863012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100239g3	gene6002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6213	rna6213-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24475.1	cds6198	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:861157..863012+
coding sequence from alignment at CM002467.1:861157..863012+

mRNA sequence

>rna6213 ID=rna6213|Name=rna6213|organism=Nannochloropsis gaditana|type=mRNA|length=1166bp
CGGCGTTCAATTCGCCGTTCGCCCCCATTCTTTTTTTCTTTGGACTGCGA
CACTTGTGGCGTGGAATTTGTCTTTCGTTTTCACTCTTGAGGCTTGGTGT
ATTTGTGGTCCATGCTGTTTTATTCATTTTTGGCTCATTTTTTTAGAAAA
TTAACTACGCAGAGTATGGGGCAGGAAAAATAGAGTCGTTATCAGACAAA
CATGCTAGGATCTGGCATGACATGGATGCCCTGGATAACTTGGCTTTCGT
ACCCGATTTACTTTATGTATTGTTTCTTCTTCCTCCATATTCGCCATAAA
GGCTTATGACGACACTATGTGTAAAAAAAAATGGCATTGCTGTACAAGAG
TTCAAAAAGCCGGACGTAATATTTCTGCCAAATCTGCGAGTACGTCGCCT
GCTCCTCTGCCTTCTAGTCGCGGCAAGAAGCGCCACAGCAATTCAGGGTG
GACTGGGGCCCTGTTTCTGCCCGCTCCGTGCTCCCTGTGTTTCCTCTGAG
TCGTTGACCTCCAGCACCTCCACTACGTTTCGGCCCCCGTCAGCCCGACT
TCCCCGTGCTGTTGCTTACACCAAGGAAAGAAGAAGACCTTTCACATTGC
TTCTCGCTCCCAAGCTCCGGAATAAATCCCACCTCTCCTCGTTGTTCTCC
TTCCTCCCTCCTACCGAGCATCCCGACGACCCACACTTACAAGACACCAC
GGAAGAGCGACCCCTTTTCTTCACGTTTCCTTCCATAGAAAATGCGCGTT
TCGTTGCAGCTCATCTGGTCGACTTTGGCCTGGCCCGAACGGTGTCGTTG
TGGCCGTCCAGCGTGGAAACTTGGGAAGCCGCCGACGACGGGAAAAGGTG
AGGAGGGAGGAGGGAGGAAGAGGGCAGTAGAAAGCAGGATGATGCATAGG
AAAGATATGGCTTGGGAAGGCATACTACTAGTCACATTATTCCAGCCAAC
TGATTTGTTCCTCGGTCATCCCATTTTCTTGGCAGGTCGACTGGCCGGGG
GGGTCCGCGACAGGAGTATGGGCTGATGGTGATGGCAAGGGCCGGGGCGG
CTCGACTGGTAAGGAGAGGAAGGGAGATGAAAGGGATAGGTGGGATTGCG
TGCACAGCGGTATTGCCTTGAGGGGGGAAAACGGCGTCGAGAGGAACATG
GTGAAGCCGAGAAGGA

protein sequence of rna6213

>rna6213-protein ID=rna6213-protein|Name=rna6213|organism=Nannochloropsis gaditana|type=polypeptide|length=212bp
MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVV
HMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMS
KMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIE
ALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYV
PQHGPLGKKAGT

mRNA from alignment at CM002467.1:861157..863012+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6213 ID=rna6213|Name=rna6213|organism=Nannochloropsis gaditana|type=mRNA|length=1856bp|location=Sequence derived from alignment at CM002467.1:861157..863012+ (Nannochloropsis gaditana)
GGACACTGATTACGTTTGTCTACGACGTCTATCCGCGTCCCTAATCGCTC
GAGGTTTCAGATAGACACGGTCTGACACGAGACACAGGATCTCACGTTTT
CTCTTACACTCCTGAATTCCCCTACAACAGCGGCAACATGGGGCGACGAC
CTGCGCGTTGCTACCGCTTCCACAAGAAGAAGCCCTATATCAAGTCTCGC
TACCTGCGTGGTGTGCCGGGTAAGAACTAGTACAGGGAAGGGCCGGGAAG
ATAGAATGCCCGGACGGGGTGGAAGCCAATCAAAGACGCTCATCTCCTCa
ttgctccttctcctcgtttgGTCTACGAAATTAGACTCTAAAATCCGTAT
ATTTGACGGCGGAAATAAGAAGGCGGATGTTGGAATGTACCCCTGTGTCG
TGCACATGGTTTCGGACGAAAAGGTACGTCAGTAGGGAGACGAAGAACGT
GGTCTGAtggatgaaggggggggcgccatCAATGCTCGTTGGGACGACGG
AGCGACGGTCTTGGATTGTGTTAGTTGGTTAAGAATATCCGCGAAGGTCT
ACTTTCGTCGATTCATGTGGACTCATGCACCTATGTTCTTTATCCACGCC
TTCAAACTCCTATTAGGAGCAAATTTCTTcggaggccatggaggctGCCC
GCGTCGCGTGCAACAAGTACATGCTGAAAAACGCTGGAAAGGTGGGTGTA
GGTGTAGCGATGGAGAACGGGTAGACTCGTTCACGGATGTGTGAGGGAAG
GCCTAGATTTGTCCCCGGGGGTTTGAGCTGCCGAAGAGGCTAATCTACCC
TGTCCCCGTCACGCAGGACTCCTACCACATCCGTGTGCGTATGCACCCTT
TCCACGTCCTACGCATGTCCAAGATGCTTTCATGCGCCGGCGCCGATCGA
CTCTCTCAGGTTTGTCAGGGGGACAGGGCGTgacaggagggcaaggggga
aaagaggtagCAGGTCGCATGCGGGGGATCGGTACTCCGGAAATGTTGTG
CACATCGGGAATTTCGCGACGGGCAAGTCATGTTCCCCACCTCATGGACA
CGTTATCTCGTTCGACTGgtgcctcccctttcccacagGGTATGCGTCAC
TCGTTCGGAAAGCCCGCGGGGAAAGTCGCGCGTATCGAGATCGGCCAGGC
GATGATCAGCGTCCGCTGCAAGGATGTCCACCAGGTGCACGCCATCGAGG
CCCTCCGCCGTGCCAAGTTCAAGTTTCCGGGTCGACAGAAGGTAGGGtag
acggagggagagtgtGATGcaggagcgagagagagggaggggggccgtgg
aggacctTGCAGTGAAATTATGTTCAAGAGGGGCTGCATGGTTGCATTGC
CAACATTCTCagtgcaggagaaggaataCCGGCCATGAAGCGCCGTGACA
TCATGCATGCCACCATTCGTCGTGCTCACCGTCCagtctcccttcccttc
ccctcctttctccagATCTTGAAGTCGAACAAGTGGGGCTTCACGAACTG
GGACCGGGAGGACTACGTGCGCGGGCGCTTGGACGGGACCCTGATCGGCG
ACGGGGTGGGGGTCAAGTACGTCCCGCAGCATGGGCCgttggggaagaag
gcgggcacctagagggaggagggtgaagggggCGAGAGCGAGCACGGGCG
TAGGCGGAGGTCTTTAAGTAGGCAAAAAGGACGTGGAAATAGGGGCGAGA
GGTCGGTGAgagaggtgctggcggccCTCTGTGGTATGCCTCGGTTTCGA
CTCGAAGCTTGCGGATGGAGATGTGAGTCCATAGGGTagatgaagaggag
cagcCTCCCCACCAAAAGAAGcacccggcctccccccacgGCCATTGTCC
CGTGCG

Coding sequence (CDS) from alignment at CM002467.1:861157..863012+

>rna6213 ID=rna6213|Name=rna6213|organism=Nannochloropsis gaditana|type=CDS|length=3834bp|location=Sequence derived from alignment at CM002467.1:861157..863012+ (Nannochloropsis gaditana)
ATGGGGCGACGACCTGCGCGTTGCTACCGCTTCCACAAGAAGAAGCCCTA
TATCAAGTCTCGCTACCTGCGTGGTGTGCCGGACTCTAAAATCCGTATAT
TTGACGGCGGAAATAAGAAGGCGGATGTTGGAATGTACCCCTGTGTCGTG
CACATGGTTTCGGACGAAAAGGAGCAAATTTCTTcggaggccatggaggc
tGCCCGCGTCGCGTGCAACAAGTACATGCTGAAAAACGCTGGAAAGGACT
CCTACCACATCCGTGTGCGTATGCACCCTTTCCACGTCCTACGCATGTCC
AAGATGCTTTCATGCGCCGGCGCCGATCGACTCTCTCAGGGTATGCGTCA
CTCGTTCGGAAAGCCCGCGGGGAAAGTCGCGCGTATCGAGATCGGCCAGG
CGATGATCAGCGTCCGCTGCAAGGATGTCCACCAGGTGCACGCCATCGAG
GCCCTCCGCCGTGCCAAGTTCAAGTTTCCGGGTCGACAGAAGATCTTGAA
GTCGAACAAGTGGGGCTTCACGAACTGGGACCGGGAGGACTACGTGCGCG
GGCGCTTGGACGGGACCCTGATCGGCGACGGGGTGGGGGTCAAGTACGTC
CCGCAGCATGGGCCgttggggaagaaggcgggcacctagATGGGGCGACG
ACCTGCGCGTTGCTACCGCTTCCACAAGAAGAAGCCCTATATCAAGTCTC
GCTACCTGCGTGGTGTGCCGGACTCTAAAATCCGTATATTTGACGGCGGA
AATAAGAAGGCGGATGTTGGAATGTACCCCTGTGTCGTGCACATGGTTTC
GGACGAAAAGGAGCAAATTTCTTcggaggccatggaggctGCCCGCGTCG
CGTGCAACAAGTACATGCTGAAAAACGCTGGAAAGGACTCCTACCACATC
CGTGTGCGTATGCACCCTTTCCACGTCCTACGCATGTCCAAGATGCTTTC
ATGCGCCGGCGCCGATCGACTCTCTCAGGGTATGCGTCACTCGTTCGGAA
AGCCCGCGGGGAAAGTCGCGCGTATCGAGATCGGCCAGGCGATGATCAGC
GTCCGCTGCAAGGATGTCCACCAGGTGCACGCCATCGAGGCCCTCCGCCG
TGCCAAGTTCAAGTTTCCGGGTCGACAGAAGATCTTGAAGTCGAACAAGT
GGGGCTTCACGAACTGGGACCGGGAGGACTACGTGCGCGGGCGCTTGGAC
GGGACCCTGATCGGCGACGGGGTGGGGGTCAAGTACGTCCCGCAGCATGG
GCCgttggggaagaaggcgggcacctagATGGGGCGACGACCTGCGCGTT
GCTACCGCTTCCACAAGAAGAAGCCCTATATCAAGTCTCGCTACCTGCGT
GGTGTGCCGGACTCTAAAATCCGTATATTTGACGGCGGAAATAAGAAGGC
GGATGTTGGAATGTACCCCTGTGTCGTGCACATGGTTTCGGACGAAAAGG
AGCAAATTTCTTcggaggccatggaggctGCCCGCGTCGCGTGCAACAAG
TACATGCTGAAAAACGCTGGAAAGGACTCCTACCACATCCGTGTGCGTAT
GCACCCTTTCCACGTCCTACGCATGTCCAAGATGCTTTCATGCGCCGGCG
CCGATCGACTCTCTCAGGGTATGCGTCACTCGTTCGGAAAGCCCGCGGGG
AAAGTCGCGCGTATCGAGATCGGCCAGGCGATGATCAGCGTCCGCTGCAA
GGATGTCCACCAGGTGCACGCCATCGAGGCCCTCCGCCGTGCCAAGTTCA
AGTTTCCGGGTCGACAGAAGATCTTGAAGTCGAACAAGTGGGGCTTCACG
AACTGGGACCGGGAGGACTACGTGCGCGGGCGCTTGGACGGGACCCTGAT
CGGCGACGGGGTGGGGGTCAAGTACGTCCCGCAGCATGGGCCgttgggga
agaaggcgggcacctagATGGGGCGACGACCTGCGCGTTGCTACCGCTTC
CACAAGAAGAAGCCCTATATCAAGTCTCGCTACCTGCGTGGTGTGCCGGA
CTCTAAAATCCGTATATTTGACGGCGGAAATAAGAAGGCGGATGTTGGAA
TGTACCCCTGTGTCGTGCACATGGTTTCGGACGAAAAGGAGCAAATTTCT
TcggaggccatggaggctGCCCGCGTCGCGTGCAACAAGTACATGCTGAA
AAACGCTGGAAAGGACTCCTACCACATCCGTGTGCGTATGCACCCTTTCC
ACGTCCTACGCATGTCCAAGATGCTTTCATGCGCCGGCGCCGATCGACTC
TCTCAGGGTATGCGTCACTCGTTCGGAAAGCCCGCGGGGAAAGTCGCGCG
TATCGAGATCGGCCAGGCGATGATCAGCGTCCGCTGCAAGGATGTCCACC
AGGTGCACGCCATCGAGGCCCTCCGCCGTGCCAAGTTCAAGTTTCCGGGT
CGACAGAAGATCTTGAAGTCGAACAAGTGGGGCTTCACGAACTGGGACCG
GGAGGACTACGTGCGCGGGCGCTTGGACGGGACCCTGATCGGCGACGGGG
TGGGGGTCAAGTACGTCCCGCAGCATGGGCCgttggggaagaaggcgggc
acctagATGGGGCGACGACCTGCGCGTTGCTACCGCTTCCACAAGAAGAA
GCCCTATATCAAGTCTCGCTACCTGCGTGGTGTGCCGGACTCTAAAATCC
GTATATTTGACGGCGGAAATAAGAAGGCGGATGTTGGAATGTACCCCTGT
GTCGTGCACATGGTTTCGGACGAAAAGGAGCAAATTTCTTcggaggccat
ggaggctGCCCGCGTCGCGTGCAACAAGTACATGCTGAAAAACGCTGGAA
AGGACTCCTACCACATCCGTGTGCGTATGCACCCTTTCCACGTCCTACGC
ATGTCCAAGATGCTTTCATGCGCCGGCGCCGATCGACTCTCTCAGGGTAT
GCGTCACTCGTTCGGAAAGCCCGCGGGGAAAGTCGCGCGTATCGAGATCG
GCCAGGCGATGATCAGCGTCCGCTGCAAGGATGTCCACCAGGTGCACGCC
ATCGAGGCCCTCCGCCGTGCCAAGTTCAAGTTTCCGGGTCGACAGAAGAT
CTTGAAGTCGAACAAGTGGGGCTTCACGAACTGGGACCGGGAGGACTACG
TGCGCGGGCGCTTGGACGGGACCCTGATCGGCGACGGGGTGGGGGTCAAG
TACGTCCCGCAGCATGGGCCgttggggaagaaggcgggcacctagATGGG
GCGACGACCTGCGCGTTGCTACCGCTTCCACAAGAAGAAGCCCTATATCA
AGTCTCGCTACCTGCGTGGTGTGCCGGACTCTAAAATCCGTATATTTGAC
GGCGGAAATAAGAAGGCGGATGTTGGAATGTACCCCTGTGTCGTGCACAT
GGTTTCGGACGAAAAGGAGCAAATTTCTTcggaggccatggaggctGCCC
GCGTCGCGTGCAACAAGTACATGCTGAAAAACGCTGGAAAGGACTCCTAC
CACATCCGTGTGCGTATGCACCCTTTCCACGTCCTACGCATGTCCAAGAT
GCTTTCATGCGCCGGCGCCGATCGACTCTCTCAGGGTATGCGTCACTCGT
TCGGAAAGCCCGCGGGGAAAGTCGCGCGTATCGAGATCGGCCAGGCGATG
ATCAGCGTCCGCTGCAAGGATGTCCACCAGGTGCACGCCATCGAGGCCCT
CCGCCGTGCCAAGTTCAAGTTTCCGGGTCGACAGAAGATCTTGAAGTCGA
ACAAGTGGGGCTTCACGAACTGGGACCGGGAGGACTACGTGCGCGGGCGC
TTGGACGGGACCCTGATCGGCGACGGGGTGGGGGTCAAGTACGTCCCGCA
GCATGGGCCgttggggaagaaggcgggcacctag

Synonyms

Publications