EWM24475.1, cds6198 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|553183215|ref|XP_005853860.1| (large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526] >gi|422295202|gb|EKU22501.1| large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526] >gi|585105945|gb|EWM24475.1| large subunit ribosomal protein l10e [Nannochloropsis gaditana]) HSP 1 Score: 439.113 bits (1128), Expect = 5.047e-156 Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT 212
MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT
Sbjct: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT 212
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|299115447|emb|CBN75612.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 315.079 bits (806), Expect = 7.357e-107 Identity = 147/208 (70.67%), Postives = 174/208 (83.65%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGK 208
MGRRPARCYRF K KP+IKSRY RGVPD KIRI++ GNKKA V +P VVH+VSDEKEQ++SEA+EAARV+ NKYM K AGKD++H+R+R HPFHVLR++KMLSCAGADRL GMRH++GKP G AR+ IGQ +IS+R KD H+ A+EALRRAKFKFPGRQKIL+SNKWGFT + RE+YVRGR +G L DG VKY+ QHGPL K
Sbjct: 1 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQLTSEALEAARVSANKYMAKFAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPQGTTARVAIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREEYVRGRKEGWLQKDGNSVKYIAQHGPLAK 208
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|676389209|ref|XP_009037883.1| (hypothetical protein AURANDRAFT_27934 [Aureococcus anophagefferens] >gi|323451373|gb|EGB07250.1| hypothetical protein AURANDRAFT_27934 [Aureococcus anophagefferens]) HSP 1 Score: 303.908 bits (777), Expect = 2.452e-102 Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
MGRRPARC RF K KPYIKSRY RGVPD KIRIFD GNKKA V +P V H+VSDEKEQISS A+EAARVACNKY++KN GK++YHIR R HPFHV+R +KMLSCAGADRLS GMRHS+GKP + AR+ IGQA++SVR KD + + ALRRAKFKFPGRQKILKS KWGFT +DRE YV+GR + L+ G VKY+ HG +G
Sbjct: 1 MGRRPARCSRFQKNKPYIKSRYCRGVPDPKIRIFDCGNKKASVDQFPFVAHLVSDEKEQISSNALEAARVACNKYLIKNCGKEAYHIRTRAHPFHVIRQNKMLSCAGADRLSSGMRHSYGKPMERAARVSIGQAVLSVRAKDANADAVLVALRRAKFKFPGRQKILKSAKWGFTKFDRETYVKGRQEKWLVAAGSSVKYITPHGRIG 207
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|195998652|ref|XP_002109194.1| (conserved hypothetical protein [Trichoplax adhaerens] >gi|190587318|gb|EDV27360.1| conserved hypothetical protein [Trichoplax adhaerens]) HSP 1 Score: 299.286 bits (765), Expect = 1.182e-100 Identity = 139/207 (67.15%), Postives = 167/207 (80.68%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
MGRRPARCYR+ K K Y KSR+ RGVPD KIRI+D G KKA+V +P +H+VSDE EQ+SSEA+EAAR+ CNKYM+K KD +HIR+R+HPFHVLR++KMLSCAGADRL GMR +FGKP G VAR++IGQ +IS+R KD HQ AIEALRRAKFKFPGRQKI S KWGFT WD+EDY++ + DG L+ DGVG +Y+ HGPL
Sbjct: 1 MGRRPARCYRYCKNKAYPKSRFCRGVPDPKIRIYDLGRKKANVEDFPTCIHLVSDEFEQLSSEALEAARICCNKYMVKYTAKDQFHIRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPYGTVARVKIGQPLISIRTKDNHQAKAIEALRRAKFKFPGRQKIYVSKKWGFTKWDKEDYLQMQQDGKLLSDGVGCQYLKDHGPLS 207
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|961376626|gb|ALS05057.1| (60S ribosomal protein L10 [Centropages tenuiremis]) HSP 1 Score: 297.36 bits (760), Expect = 7.332e-100 Identity = 140/206 (67.96%), Postives = 164/206 (79.61%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
MGRRPARCYR+ K KPY KSR+ RGVPD KIRIFD G KKA V +P +H+VSDE EQ+SSEAMEAAR+ CNKY++KN GKD +HIRVR+HPFHVLR++KMLSC GADRL GMR +FGK G VAR+ IGQ ++SVR D H+ IE+LRR+KFKFPGRQKI S KWGFT WDREDY + R +G L+ DGVGV+Y P HGPL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKKAGVDEFPLSIHLVSDELEQLSSEAMEAARICCNKYLVKNCGKDQFHIRVRVHPFHVLRINKMLSCVGADRLQTGMRGAFGKAHGTVARVRIGQILLSVRSSDKHKAEVIESLRRSKFKFPGRQKIYVSKKWGFTKWDREDYEKMRANGQLLTDGVGVQYRPDHGPL 206
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|469664405|gb|AGH70157.1| (60S ribosomal protein L10 [Placozoa sp. H4]) HSP 1 Score: 297.36 bits (760), Expect = 7.438e-100 Identity = 138/206 (66.99%), Postives = 168/206 (81.55%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
MGRRPARCYR+ K K Y KSR+ RGVPD KIRI+D G KKA+V +P VH+VSDE EQ+SSEA+EAAR+ CNKYM+K+ GKD +HIR+R+HPFHVLR++KMLSCAGADRL GMR +FGKP G VAR+ IGQ +IS+R ++ ++ AIEALRRAKFKFPGRQKI S KWGFT WD+EDY+R + +G LI DGVG +Y+ HGPL
Sbjct: 1 MGRRPARCYRYCKNKAYPKSRFCRGVPDPKIRIYDLGRKKANVDDFPACVHLVSDEFEQLSSEALEAARICCNKYMVKSTGKDQFHIRMRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPYGTVARVNIGQPLISIRTRENNEAKAIEALRRAKFKFPGRQKIYVSQKWGFTKWDKEDYIRMKQEGLLISDGVGCQYMKPHGPL 206
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|325188278|emb|CCA22819.1| (60S ribosomal protein L10 putative [Albugo laibachii Nc14]) HSP 1 Score: 296.975 bits (759), Expect = 8.497e-100 Identity = 138/206 (66.99%), Postives = 168/206 (81.55%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
MGRRPA+CYRF KKP+I+SRY RGVPDSKIRI+D GNKKA V +P V H+VSDEKEQ+S+EA+EAAR+A N+Y++K GKD++H+R+R HPF VLR++KMLSCAGADRL GMRH++GKPAG AR+ IGQ +ISVR KD +EALRRAKFKFPGRQK+L S KWGFT ++RE+Y + R DGTLI DG KY+P HGPL
Sbjct: 1 MGRRPAKCYRFQNKKPFIRSRYCRGVPDSKIRIYDVGNKKASVDAFPYVAHLVSDEKEQLSAEALEAARIAANRYLVKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGTAARVAIGQPIISVRTKDNFGPACVEALRRAKFKFPGRQKVLGSKKWGFTKYEREEYAKLRADGTLIVDGNHEKYMPLHGPL 206
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|1026971224|ref|XP_016609562.1| (60S ribosomal L10-like protein [Spizellomyces punctatus DAOM BR117] >gi|907095869|gb|KND01523.1| 60S ribosomal L10-like protein [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 294.664 bits (753), Expect = 9.702e-99 Identity = 141/206 (68.45%), Postives = 163/206 (79.13%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
MGRRPARCYR+ K KPY KSRY RGVPD KIRIFD G KKA V +PC VH++SDE EQISSEA+EAAR+ NKY++K AGKDS+H+RVR+HPFHV RM+KMLSCAGADRL QGMR +FGKP G VAR+ IGQ ++SVR KD ++ EALRRAK+KFPGRQK+L SNKWGFT REDYV R G L DG VKY+ + GPL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIFDLGRKKAGVDEFPCTVHLISDEHEQISSEALEAARITANKYIVKMAGKDSFHMRVRVHPFHVTRMNKMLSCAGADRLQQGMRGAFGKPQGLVARVSIGQVLLSVRTKDSNKAVVTEALRRAKYKFPGRQKVLLSNKWGFTKLSREDYVAARQAGMLQPDGCYVKYLAEKGPL 206
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|219126015|ref|XP_002183263.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405538|gb|EEC45481.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 294.278 bits (752), Expect = 1.302e-98 Identity = 144/210 (68.57%), Postives = 166/210 (79.05%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKA 210
MGRRPARCYR+ K KPYIKSRY RGVP+SKIRIFD G KKA V +P V H+V DEK+QISSEA+EA RVA NK++ KN GKD++HIR+R HPFHVLR +KMLSCAGADRLS GMRHS+GKP G AR++IGQ +ISVR KD H+ H IEA+RR KFKF GRQKILKS KWGFT++ RE+YVR R G L DG VK + GPL K A
Sbjct: 1 MGRRPARCYRYQKNKPYIKSRYCRGVPESKIRIFDVGAKKAPVDQFPFVAHLVCDEKQQISSEALEACRVAINKHLSKNIGKDAFHIRIRAHPFHVLRANKMLSCAGADRLSSGMRHSYGKPIGVAARVDIGQILISVRSKDTHEAHVIEAIRRGKFKFAGRQKILKSLKWGFTSYPREEYVRMRRCGELSADGNIVKVHNRRGPLEKSA 210
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|1176085467|ref|XP_020612994.1| (60S ribosomal protein L10-like [Orbicella faveolata]) HSP 1 Score: 293.893 bits (751), Expect = 1.481e-98 Identity = 141/207 (68.12%), Postives = 165/207 (79.71%), Query Frame = 0
Query: 1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
MGRRPARCYR+ K KPY KSR+ RGVPD+KIRI+D G KKA V P VHMVSDE EQ+SSEA+EAAR+ CNKYM+KN GKDS+H+R+R+HPFHV+R++KMLSCAGADRL GMR +FGKP G VAR+ IGQ ++SVR KD ++ AIEALRRAKFKFPGRQKI S KWGFT +DRE Y + R G LI DGV KY+ HGPL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIYDLGRKKARVDELPLCVHMVSDEYEQLSSEALEAARICCNKYMVKNCGKDSFHLRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVNIGQVIMSVRTKDGNKAAAIEALRRAKFKFPGRQKIYVSKKWGFTKFDRETYEQWRASGKLIPDGVIAKYIADHGPLA 207 The following BLAST results are available for this feature:
BLAST of EWM24475.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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