EWM24475.1, cds6198 (CDS) Nannochloropsis gaditana

Overview
NameEWM24475.1
Unique Namecds6198
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:861294..861375 +
Alignment locationCM002467.1:861491..861579 +
Alignment locationCM002467.1:861773..861847 +
Alignment locationCM002467.1:861973..862065 +
Alignment locationCM002467.1:862245..862397 +
Alignment locationCM002467.1:862622..862768 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24475.1
Productlarge subunit ribosomal protein l10e
Orig transcript idgnl|cribi|Naga_100239g3.3873.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:861294..861375 +
CM002467.1supercontigCM002467.1:861491..861579 +
CM002467.1supercontigCM002467.1:861773..861847 +
CM002467.1supercontigCM002467.1:861973..862065 +
CM002467.1supercontigCM002467.1:862245..862397 +
CM002467.1supercontigCM002467.1:862622..862768 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR018255Ribosomal_L10e_CS
IPR001197Ribosomal_L10e
IPR016180Ribosomal_L10e/L16
Homology
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|553183215|ref|XP_005853860.1| (large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526] >gi|422295202|gb|EKU22501.1| large subunit ribosomal protein L10e [Nannochloropsis gaditana CCMP526] >gi|585105945|gb|EWM24475.1| large subunit ribosomal protein l10e [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 5.047e-156
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT 212
            MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT
Sbjct:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKAGT 212          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|299115447|emb|CBN75612.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 315.079 bits (806), Expect = 7.357e-107
Identity = 147/208 (70.67%), Postives = 174/208 (83.65%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGK 208
            MGRRPARCYRF K KP+IKSRY RGVPD KIRI++ GNKKA V  +P VVH+VSDEKEQ++SEA+EAARV+ NKYM K AGKD++H+R+R HPFHVLR++KMLSCAGADRL  GMRH++GKP G  AR+ IGQ +IS+R KD H+  A+EALRRAKFKFPGRQKIL+SNKWGFT + RE+YVRGR +G L  DG  VKY+ QHGPL K
Sbjct:    1 MGRRPARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQLTSEALEAARVSANKYMAKFAGKDNFHMRIRAHPFHVLRINKMLSCAGADRLQTGMRHAYGKPQGTTARVAIGQIIISIRSKDNHRPTAVEALRRAKFKFPGRQKILQSNKWGFTKYPREEYVRGRKEGWLQKDGNSVKYIAQHGPLAK 208          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|676389209|ref|XP_009037883.1| (hypothetical protein AURANDRAFT_27934 [Aureococcus anophagefferens] >gi|323451373|gb|EGB07250.1| hypothetical protein AURANDRAFT_27934 [Aureococcus anophagefferens])

HSP 1 Score: 303.908 bits (777), Expect = 2.452e-102
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
            MGRRPARC RF K KPYIKSRY RGVPD KIRIFD GNKKA V  +P V H+VSDEKEQISS A+EAARVACNKY++KN GK++YHIR R HPFHV+R +KMLSCAGADRLS GMRHS+GKP  + AR+ IGQA++SVR KD +    + ALRRAKFKFPGRQKILKS KWGFT +DRE YV+GR +  L+  G  VKY+  HG +G
Sbjct:    1 MGRRPARCSRFQKNKPYIKSRYCRGVPDPKIRIFDCGNKKASVDQFPFVAHLVSDEKEQISSNALEAARVACNKYLIKNCGKEAYHIRTRAHPFHVIRQNKMLSCAGADRLSSGMRHSYGKPMERAARVSIGQAVLSVRAKDANADAVLVALRRAKFKFPGRQKILKSAKWGFTKFDRETYVKGRQEKWLVAAGSSVKYITPHGRIG 207          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|195998652|ref|XP_002109194.1| (conserved hypothetical protein [Trichoplax adhaerens] >gi|190587318|gb|EDV27360.1| conserved hypothetical protein [Trichoplax adhaerens])

HSP 1 Score: 299.286 bits (765), Expect = 1.182e-100
Identity = 139/207 (67.15%), Postives = 167/207 (80.68%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
            MGRRPARCYR+ K K Y KSR+ RGVPD KIRI+D G KKA+V  +P  +H+VSDE EQ+SSEA+EAAR+ CNKYM+K   KD +HIR+R+HPFHVLR++KMLSCAGADRL  GMR +FGKP G VAR++IGQ +IS+R KD HQ  AIEALRRAKFKFPGRQKI  S KWGFT WD+EDY++ + DG L+ DGVG +Y+  HGPL 
Sbjct:    1 MGRRPARCYRYCKNKAYPKSRFCRGVPDPKIRIYDLGRKKANVEDFPTCIHLVSDEFEQLSSEALEAARICCNKYMVKYTAKDQFHIRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPYGTVARVKIGQPLISIRTKDNHQAKAIEALRRAKFKFPGRQKIYVSKKWGFTKWDKEDYLQMQQDGKLLSDGVGCQYLKDHGPLS 207          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|961376626|gb|ALS05057.1| (60S ribosomal protein L10 [Centropages tenuiremis])

HSP 1 Score: 297.36 bits (760), Expect = 7.332e-100
Identity = 140/206 (67.96%), Postives = 164/206 (79.61%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
            MGRRPARCYR+ K KPY KSR+ RGVPD KIRIFD G KKA V  +P  +H+VSDE EQ+SSEAMEAAR+ CNKY++KN GKD +HIRVR+HPFHVLR++KMLSC GADRL  GMR +FGK  G VAR+ IGQ ++SVR  D H+   IE+LRR+KFKFPGRQKI  S KWGFT WDREDY + R +G L+ DGVGV+Y P HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFNRGVPDPKIRIFDLGRKKAGVDEFPLSIHLVSDELEQLSSEAMEAARICCNKYLVKNCGKDQFHIRVRVHPFHVLRINKMLSCVGADRLQTGMRGAFGKAHGTVARVRIGQILLSVRSSDKHKAEVIESLRRSKFKFPGRQKIYVSKKWGFTKWDREDYEKMRANGQLLTDGVGVQYRPDHGPL 206          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|469664405|gb|AGH70157.1| (60S ribosomal protein L10 [Placozoa sp. H4])

HSP 1 Score: 297.36 bits (760), Expect = 7.438e-100
Identity = 138/206 (66.99%), Postives = 168/206 (81.55%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
            MGRRPARCYR+ K K Y KSR+ RGVPD KIRI+D G KKA+V  +P  VH+VSDE EQ+SSEA+EAAR+ CNKYM+K+ GKD +HIR+R+HPFHVLR++KMLSCAGADRL  GMR +FGKP G VAR+ IGQ +IS+R ++ ++  AIEALRRAKFKFPGRQKI  S KWGFT WD+EDY+R + +G LI DGVG +Y+  HGPL
Sbjct:    1 MGRRPARCYRYCKNKAYPKSRFCRGVPDPKIRIYDLGRKKANVDDFPACVHLVSDEFEQLSSEALEAARICCNKYMVKSTGKDQFHIRMRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPYGTVARVNIGQPLISIRTRENNEAKAIEALRRAKFKFPGRQKIYVSQKWGFTKWDKEDYIRMKQEGLLISDGVGCQYMKPHGPL 206          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|325188278|emb|CCA22819.1| (60S ribosomal protein L10 putative [Albugo laibachii Nc14])

HSP 1 Score: 296.975 bits (759), Expect = 8.497e-100
Identity = 138/206 (66.99%), Postives = 168/206 (81.55%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
            MGRRPA+CYRF  KKP+I+SRY RGVPDSKIRI+D GNKKA V  +P V H+VSDEKEQ+S+EA+EAAR+A N+Y++K  GKD++H+R+R HPF VLR++KMLSCAGADRL  GMRH++GKPAG  AR+ IGQ +ISVR KD      +EALRRAKFKFPGRQK+L S KWGFT ++RE+Y + R DGTLI DG   KY+P HGPL
Sbjct:    1 MGRRPAKCYRFQNKKPFIRSRYCRGVPDSKIRIYDVGNKKASVDAFPYVAHLVSDEKEQLSAEALEAARIAANRYLVKYCGKDNFHMRIRCHPFQVLRINKMLSCAGADRLQTGMRHAYGKPAGTAARVAIGQPIISVRTKDNFGPACVEALRRAKFKFPGRQKVLGSKKWGFTKYEREEYAKLRADGTLIVDGNHEKYMPLHGPL 206          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|1026971224|ref|XP_016609562.1| (60S ribosomal L10-like protein [Spizellomyces punctatus DAOM BR117] >gi|907095869|gb|KND01523.1| 60S ribosomal L10-like protein [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 294.664 bits (753), Expect = 9.702e-99
Identity = 141/206 (68.45%), Postives = 163/206 (79.13%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPL 206
            MGRRPARCYR+ K KPY KSRY RGVPD KIRIFD G KKA V  +PC VH++SDE EQISSEA+EAAR+  NKY++K AGKDS+H+RVR+HPFHV RM+KMLSCAGADRL QGMR +FGKP G VAR+ IGQ ++SVR KD ++    EALRRAK+KFPGRQK+L SNKWGFT   REDYV  R  G L  DG  VKY+ + GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIFDLGRKKAGVDEFPCTVHLISDEHEQISSEALEAARITANKYIVKMAGKDSFHMRVRVHPFHVTRMNKMLSCAGADRLQQGMRGAFGKPQGLVARVSIGQVLLSVRTKDSNKAVVTEALRRAKYKFPGRQKVLLSNKWGFTKLSREDYVAARQAGMLQPDGCYVKYLAEKGPL 206          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|219126015|ref|XP_002183263.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405538|gb|EEC45481.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 294.278 bits (752), Expect = 1.302e-98
Identity = 144/210 (68.57%), Postives = 166/210 (79.05%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLGKKA 210
            MGRRPARCYR+ K KPYIKSRY RGVP+SKIRIFD G KKA V  +P V H+V DEK+QISSEA+EA RVA NK++ KN GKD++HIR+R HPFHVLR +KMLSCAGADRLS GMRHS+GKP G  AR++IGQ +ISVR KD H+ H IEA+RR KFKF GRQKILKS KWGFT++ RE+YVR R  G L  DG  VK   + GPL K A
Sbjct:    1 MGRRPARCYRYQKNKPYIKSRYCRGVPESKIRIFDVGAKKAPVDQFPFVAHLVCDEKQQISSEALEACRVAINKHLSKNIGKDAFHIRIRAHPFHVLRANKMLSCAGADRLSSGMRHSYGKPIGVAARVDIGQILISVRSKDTHEAHVIEAIRRGKFKFAGRQKILKSLKWGFTSYPREEYVRMRRCGELSADGNIVKVHNRRGPLEKSA 210          
BLAST of EWM24475.1 vs. NCBI_GenBank
Match: gi|1176085467|ref|XP_020612994.1| (60S ribosomal protein L10-like [Orbicella faveolata])

HSP 1 Score: 293.893 bits (751), Expect = 1.481e-98
Identity = 141/207 (68.12%), Postives = 165/207 (79.71%), Query Frame = 0
Query:    1 MGRRPARCYRFHKKKPYIKSRYLRGVPDSKIRIFDGGNKKADVGMYPCVVHMVSDEKEQISSEAMEAARVACNKYMLKNAGKDSYHIRVRMHPFHVLRMSKMLSCAGADRLSQGMRHSFGKPAGKVARIEIGQAMISVRCKDVHQVHAIEALRRAKFKFPGRQKILKSNKWGFTNWDREDYVRGRLDGTLIGDGVGVKYVPQHGPLG 207
            MGRRPARCYR+ K KPY KSR+ RGVPD+KIRI+D G KKA V   P  VHMVSDE EQ+SSEA+EAAR+ CNKYM+KN GKDS+H+R+R+HPFHV+R++KMLSCAGADRL  GMR +FGKP G VAR+ IGQ ++SVR KD ++  AIEALRRAKFKFPGRQKI  S KWGFT +DRE Y + R  G LI DGV  KY+  HGPL 
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIYDLGRKKARVDELPLCVHMVSDEYEQLSSEALEAARICCNKYMVKNCGKDSFHLRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVNIGQVIMSVRTKDGNKAAAIEALRRAKFKFPGRQKIYVSKKWGFTKFDRETYEQWRASGKLIPDGVIAKYIADHGPLA 207          
The following BLAST results are available for this feature:
BLAST of EWM24475.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553183215|ref|XP_005853860.1|5.047e-156100.00large subunit ribosomal protein L10e [Nannochlorop... [more]
gi|299115447|emb|CBN75612.1|7.357e-10770.67conserved unknown protein [Ectocarpus siliculosus][more]
gi|676389209|ref|XP_009037883.1|2.452e-10269.57hypothetical protein AURANDRAFT_27934 [Aureococcus... [more]
gi|195998652|ref|XP_002109194.1|1.182e-10067.15conserved hypothetical protein [Trichoplax adhaere... [more]
gi|961376626|gb|ALS05057.1|7.332e-10067.9660S ribosomal protein L10 [Centropages tenuiremis][more]
gi|469664405|gb|AGH70157.1|7.438e-10066.9960S ribosomal protein L10 [Placozoa sp. H4][more]
gi|325188278|emb|CCA22819.1|8.497e-10066.9960S ribosomal protein L10 putative [Albugo laibach... [more]
gi|1026971224|ref|XP_016609562.1|9.702e-9968.4560S ribosomal L10-like protein [Spizellomyces punc... [more]
gi|219126015|ref|XP_002183263.1|1.302e-9868.57predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1176085467|ref|XP_020612994.1|1.481e-9868.1260S ribosomal protein L10-like [Orbicella faveolat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6213rna6213Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications