rna6212, rna6212 (mRNA) Nannochloropsis gaditana

Overview
Namerna6212
Unique Namerna6212
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length711
Alignment locationCM002467.1:857154..858390 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100239g2.3870.mrna
Orig protein idgnl|cribi|Naga_100239g2.3870
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:857154..858390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100239g2gene6001Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6212rna6212-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24472.1cds6197Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6212 ID=rna6212|Name=rna6212|organism=Nannochloropsis gaditana|type=mRNA|length=711bp
TACTACTTTGCCTGTAATGGCGTCATGAAACTAGAGTCTAAGACCTGTAG
CTGCAAAATTTCAGTGTTAAATGACTCTAGTCACTAGGATGGAGGAAGGG
AGGCATGGCACGCTGCCACCATCATCGTCACCAGGAGGGAAAGGAGGAGC
TCGCAGGCTTTAAATCTCACGTCGCATTTCAGCTGACGGACAGAATGAAT
TCAATCGATACCCACTTACGTTAAACAGGAATAAAAGCACGAGCACCATG
AGCAACATTGCGAGGTGGACCTGTGGCAGCACCGGGAGCGGGGATGACAG
ACTGATCAGCGTACAGCGTGGCTACGTTTGCGGGAAATGCACGCGATATG
AAGATAGATCACGGAAGAGGAGAAGGGACGGAATGAAAGTCTTTCTCTCC
TGTGCGATAATCTCTCTGGTGCTTCCCCGTACCCTCGCATCCGGCTCCAT
GACTACTTCGAGCTCTATCTCCTTCGTCCAGAAGCGCGGCGGATTCAGCC
CGCAGAGCGAATCTTTAGCATGCACATCTCCTTCCTCCTCCCCTCCCTCC
TCCTCCTCCGCCCCTCCTTCCTCCTCCTCAGCCTCCCCTCCCCCCGTACA
CGTTCGTGCCAACCCCAGCGAGGGTGAAGGAGGGGAAGGAGTGGCTGCAG
GCCCAATAGAGGGATCACTGGAGGATATGCGTGGCTACGACGCCCACCCC
TCCATGTTCGC
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protein sequence of rna6212

>rna6212-protein ID=rna6212-protein|Name=rna6212|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGL
GPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLL
APKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFV
AAHLVDFGLARTVSLWPSSVETWEAADDGKR
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mRNA from alignment at CM002467.1:857154..858390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6212 ID=rna6212|Name=rna6212|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp|location=Sequence derived from alignment at CM002467.1:857154..858390- (Nannochloropsis gaditana)
CGGCGTTCAATTCGCCGTTCGCCCCCATTCTTTTTTTCTTTGGACTGCGA
CACTTGTGGCGTGGAATTTGTCTTTCGTTTTCACTCTTGAGGCTTGGTGT
ATTTGTGGTCCATGCTGTTTTATTCATTTTTGGCTCATTTTTTTAGAAAA
TTAACTACGCAGAGTATGGGGCAGGAAAAATAGAGTCGTTATCAGACAAA
CATGCTAGGATCTGGCATGACATGGATGCCCTGGATAACTTGGCTTTCGT
ACCCGATTTACTTTATGTATTGTTTCTTCTTCCTCCATATTCGCCATAAA
GGCTTATGACGACACTATGTGTAAAAAAAAATGGCATTGCTGTACAAGAG
TTCAAAAAGCCGGACGTAATATTTCTGCCAAATCTGCGAGTACGTCGCCT
GCTCCTCTGCCTTCTAGTCGCGGCAAGAAGCGCCACAGCAATTCAGGTAC
TCAGTGGCTGGTGGTGATCATTCCATCTAATATTCTAACTTCGATTTTCA
TTCTAATCGGCGCTTAGGGTGGACTGGGGCCCTGTTTCTGCCCGCTCCGT
GCTCCCTGTGTTTCCTCTGAGTCGTTGACCTCCAGCACCTCCACTACGTT
TCGGCCCCCGTCAGCCCGACTTCCCCGTGCTGTTGCTTACACCAAGGAAA
GAAGAAGACCTTTCACATTGCTTCTCGCTCCCAAGCTCCGGAATAAATCC
CACCTCTCCTCGTTGTTCTCCTTCCTCCCTCCTACCGAGCATCCCGACGA
CCCACACTTACAAGACACCACGGAAGAGCGACCCCTTTTCTTCACGTTTC
CTTCCATAGAAAATGCGCGTTTCGTTGCAGCTCATCTGGTCGACTTTGGC
CTGGCCCGAACGGTGTCGTTGTGGCCGTCCAGCGTGGAAACTTGGGAAGC
CGCCGACGACGGGAAAAGGTGAGGAGGGAGGAGGGAGGAAGAGGGCAGTA
GAAAGCAGGATGATGCATAGGAAAGATATGGCTTGGGAAGGCATACTACT
AGTCACATTATTCCAGCCAACTGATTTGTTCCTCGGTCATCCCATTTTCT
TGGCAGGTCGACTGGCCGGGGGGGTCCGCGACAGGAGTATGGGCTGATGG
TGATGGCAAGGGCCGGGGCGGCTCGACTGGTAAGGAGAGGAAGGGAGATG
AAAGGGATAGGTGGGATTGCGTGCACAGCGGTATTGCCTTGAGGGGGGAA
AACGGCGTCGAGAGGAACATGGTGAAGCCGAGAAGGA
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Coding sequence (CDS) from alignment at CM002467.1:857154..858390-

>rna6212 ID=rna6212|Name=rna6212|organism=Nannochloropsis gaditana|type=CDS|length=1092bp|location=Sequence derived from alignment at CM002467.1:857154..858390- (Nannochloropsis gaditana)
GGTGGACTGGGGCCCTGTTTCTGCCCGCTCCGTGCTCCCTGTGTTTCCTC
TGAGTCGTTGACCTCCAGCACCTCCACTACGTTTCGGCCCCCGTCAGCCC
GACTTCCCCGTGCTGTTGCTTACACCAAGGAAAGAAGAAGACCTTTCACA
TTGCTTCTCGCTCCCAAGCTCCGGAATAAATCCCACCTCTCCTCGTTGTT
CTCCTTCCTCCCTCCTACCGAGCATCCCGACGACCCACACTTACAAGACA
CCACGGAAGAGCGACCCCTTTTCTTCACGTTTCCTTCCATAGAAAATGCG
CGTTTCGTTGCAGCTCATCTGGTCGACTTTGGCCTGGCCCGAACGGTGTC
GTTGTGGCCGTCCAGCGTGGAAACTTGGGAAGCCGCCGACGACGGGAAAA
GGTGAATGACGACACTATGTGTAAAAAAAAATGGCATTGCTGTACAAGAG
TTCAAAAAGCCGGACGTAATATTTCTGCCAAATCTGCGAGTACGTCGCCT
GCTCCTCTGCCTTCTAGTCGCGGCAAGAAGCGCCACAGCAATTCAGGGTG
GACTGGGGCCCTGTTTCTGCCCGCTCCGTGCTCCCTGTGTTTCCTCTGAG
TCGTTGACCTCCAGCACCTCCACTACGTTTCGGCCCCCGTCAGCCCGACT
TCCCCGTGCTGTTGCTTACACCAAGGAAAGAAGAAGACCTTTCACATTGC
TTCTCGCTCCCAAGCTCCGGAATAAATCCCACCTCTCCTCGTTGTTCTCC
TTCCTCCCTCCTACCGAGCATCCCGACGACCCACACTTACAAGACACCAC
GGAAGAGCGACCCCTTTTCTTCACGTTTCCTTCCATAGAAAATGCGCGTT
TCGTTGCAGCTCATCTGGTCGACTTTGGCCTGGCCCGAACGGTGTCGTTG
TGGCCGTCCAGCGTGGAAACTTGGGAAGCCGCCGACGACGGGAAAAGGTG
AATGACGACACTATGTGTAAAAAAAAATGGCATTGCTGTACAAGAGTTCA
AAAAGCCGGACGTAATATTTCTGCCAAATCTGCGAGTACGTCGCCTGCTC
CTCTGCCTTCTAGTCGCGGCAAGAAGCGCCACAGCAATTCAG
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Synonyms
Publications