EWM24472.1, cds6197 (CDS) Nannochloropsis gaditana

Overview
NameEWM24472.1
Unique Namecds6197
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:857945..858085 -
Alignment locationCM002467.1:857469..857873 -

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Properties
Property NameValue
Protein idEWM24472.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100239g2.3870.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:857945..858085 -
CM002467.1supercontigCM002467.1:857469..857873 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24472.1 vs. NCBI_GenBank
Match: gi|585105942|gb|EWM24472.1| (hypothetical protein Naga_100239g2 [Nannochloropsis gaditana])

HSP 1 Score: 365.155 bits (936), Expect = 9.544e-128
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR 181
            MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR
Sbjct:    1 MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR 181
[Close]
BLAST of EWM24472.1 vs. NCBI_GenBank
Match: gi|553183211|ref|XP_005853859.1| (hypothetical protein NGA_0447600 [Nannochloropsis gaditana CCMP526] >gi|422295201|gb|EKU22500.1| hypothetical protein NGA_0447600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 370.933 bits (951), Expect = 6.238e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR 181
            MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR
Sbjct:    1 MTTLCVKKNGIAVQEFKKPDVIFLPNLRVRRLLLCLLVAARSATAIQGGLGPCFCPLRAPCVSSESLTSSTSTTFRPPSARLPRAVAYTKERRRPFTLLLAPKLRNKSHLSSLFSFLPPTEHPDDPHLQDTTEERPLFFTFPSIENARFVAAHLVDFGLARTVSLWPSSVETWEAADDGKR 181
The following BLAST results are available for this feature:
BLAST of EWM24472.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105942|gb|EWM24472.1|9.544e-128100.00hypothetical protein Naga_100239g2 [Nannochloropsi... [more]
gi|553183211|ref|XP_005853859.1|6.238e-127100.00hypothetical protein NGA_0447600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6212rna6212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications