rna6211, rna6211 (mRNA) Nannochloropsis gaditana

Overview
Namerna6211
Unique Namerna6211
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationCM002467.1:848644..849450 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100239g1.3869.mrna
Orig protein idgnl|cribi|Naga_100239g1.3869
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:848644..849450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100239g1gene6000Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6211rna6211-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24471.1cds6196Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6211 ID=rna6211|Name=rna6211|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTCCCTTCTTCCCTCCCTCCCTTTCTCAA
AGGCTGTCAATCATGGACGGCCCCTGGTGGGGATCAAGACCAGAGAGGGG
GTTGTGCTCGTGGGGAGGAAATTCATTGAGTCCAAGAAACTTCAGGATGC
GAGGCTGCGCCAGAAACTGTATCGTGTGGACCGGCACGTGCTTGTCGGGG
TCACAGGTATGACGGCTGACGCCATGGCGCTGGTAGGGAGGGAGGGAGGG
AGGGAGGGAGGGGAGACATCATGGGTGGGAGATAGGAGGAGAGGGTCGTG
TGAGAGTGGGATGATGAGGACAAGAGCCTTGACGGCCGTGGTTGAGTGGG
GAAGAGGGGCCAGGGCCCCTGCGTCCCCGTCGTGAGACGTCACAACCATC
CAATTGATCCTACTGACCGCCCTCGACGACGAGTCTCCGGGGGGAATGGG
AGGAGGATGGAGGGAGGCATGCCTCAGTGCTTTGTCTGAGGGGCGGTGGG
AGTTGGCTTATGGATGGACGCGGAGTGATAATGAGAGGGTTCAAGGGTAC
TCTATAGAGGAGGACGGGTTCCTAGTTGCCAGGCATCACCGGGCACGTAG
GATCCCTCACACATGCGTCGCCCTCCCTCCCTCCCTCCCTCCCCTCCTCC
CTCCTTCCCTCCCTCCCTCCCTCAGGTCCGCCTCGCCCGCAGCTACGCGT
CCGAGTACCAACGGACCTACGGCGAGCCCATCCCCGTGCGGCATCTGACC
GAGCACATCTGTGACGTCAAACATTCCTGCACGATGGTACCCCCACCCCC
CTCCCTCTTTGTCTCCCCTTGCATGCAACCTCTTCCGCATGCCGTGCTGC
ATGTTTTTTTTGAATGCCTTTCTGGAAACGCCACGAATCTGTTTTATATC
GGACTATCAGCTCCCT
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protein sequence of rna6211

>rna6211-protein ID=rna6211-protein|Name=rna6211|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MSNIARWTCGSTGSGDDRLISVQRGYVCGKCTRYEDRSRKRRRDGMKVFL
SCAIISLVLPRTLASGSMTTSSSISFVQKRGGFSPQSESLACTSPSSSPP
SSSSAPPSSSSASPPPVHVRANPSEGEGGEGVAAGPIEGSLEDMRGYDAH
PSMFA
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mRNA from alignment at CM002467.1:848644..849450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6211 ID=rna6211|Name=rna6211|organism=Nannochloropsis gaditana|type=mRNA|length=807bp|location=Sequence derived from alignment at CM002467.1:848644..849450- (Nannochloropsis gaditana)
TACTACTTTGCCTGTAATGGCGTCATGAAACTAGAGTCTAAGACCTGTAG
CTGCAAAATTTCAGTGTTAAATGACTCTAGTCACTAGGATGGAGGAAGGG
AGGCATGGCACGCTGCCACCATCATCGTCACCAGGAGGGAAAGGAGGAGC
TCGCAGGCTTTAAATCTCACGTCGCATTTCAGCTGACGGACAGAATGAAT
TCAATCGATACCCACTTACGTTAAACAGGAATAAAAGCACGAGCACCATG
AGCAACATTGCGAGGTGGACCTGTGGCAGCACCGGGAGCGGGGATGACAG
ACTGATCAGCGTACAGCGTGGCTACGTTTGCGGGAAATGCACGCGATATG
AAGATAGATCACGGAAGAGGAGAAGGGACGGAATGAAAGTCTTTCTCTCC
TGTGCGATAATCTCTCTGGTGCTTGTAAGTGGACGAAGGCCGCACAGGAA
CCGGATCTGCCATCCCAAACGCTTCCCTCACATACCTCCCCTCATTATCT
ACCCCTGACCTGCCACACAGCCCCGTACCCTCGCATCCGGCTCCATGACT
ACTTCGAGCTCTATCTCCTTCGTCCAGAAGCGCGGCGGATTCAGCCCGCA
GAGCGAATCTTTAGCATGCACATCTCCTTCCTCCTCCCCTCCCTCCTCCT
CCTCCGCCCCTCCTTCCTCCTCCTCAGCCTCCCCTCCCCCCGTACACGTT
CGTGCCAACCCCAGCGAGGGTGAAGGAGGGGAAGGAGTGGCTGCAGGCCC
AATAGAGGGATCACTGGAGGATATGCGTGGCTACGACGCCCACCCCTCCA
TGTTCGC
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Coding sequence (CDS) from alignment at CM002467.1:848644..849450-

>rna6211 ID=rna6211|Name=rna6211|organism=Nannochloropsis gaditana|type=CDS|length=928bp|location=Sequence derived from alignment at CM002467.1:848644..849450- (Nannochloropsis gaditana)
CCCCGTACCCTCGCATCCGGCTCCATGACTACTTCGAGCTCTATCTCCTT
CGTCCAGAAGCGCGGCGGATTCAGCCCGCAGAGCGAATCTTTAGCATGCA
CATCTCCTTCCTCCTCCCCTCCCTCCTCCTCCTCCGCCCCTCCTTCCTCC
TCCTCAGCCTCCCCTCCCCCCGTACACGTTCGTGCCAACCCCAGCGAGGG
TGAAGGAGGGGAAGGAGTGGCTGCAGGCCCAATAGAGGGATCACTGGAGG
ATATGCGTGGCTACGACGCCCACCCCTCCATGTTCGCATGAGCAACATTG
CGAGGTGGACCTGTGGCAGCACCGGGAGCGGGGATGACAGACTGATCAGC
GTACAGCGTGGCTACGTTTGCGGGAAATGCACGCGATATGAAGATAGATC
ACGGAAGAGGAGAAGGGACGGAATGAAAGTCTTTCTCTCCTGTGCGATAA
TCTCTCTGGTGCTTCCCCGTACCCTCGCATCCGGCTCCATGACTACTTCG
AGCTCTATCTCCTTCGTCCAGAAGCGCGGCGGATTCAGCCCGCAGAGCGA
ATCTTTAGCATGCACATCTCCTTCCTCCTCCCCTCCCTCCTCCTCCTCCG
CCCCTCCTTCCTCCTCCTCAGCCTCCCCTCCCCCCGTACACGTTCGTGCC
AACCCCAGCGAGGGTGAAGGAGGGGAAGGAGTGGCTGCAGGCCCAATAGA
GGGATCACTGGAGGATATGCGTGGCTACGACGCCCACCCCTCCATGTTCG
CATGAGCAACATTGCGAGGTGGACCTGTGGCAGCACCGGGAGCGGGGATG
ACAGACTGATCAGCGTACAGCGTGGCTACGTTTGCGGGAAATGCACGCGA
TATGAAGATAGATCACGGAAGAGGAGAAGGGACGGAATGAAAGTCTTTCT
CTCCTGTGCGATAATCTCTCTGGTGCTT
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Synonyms
Publications