EWM24471.1, cds6196 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24471.1
Unique Name	cds6196
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002467.1:849027..849203 -
Alignment location	CM002467.1:848644..848930 -

Link to JBrowse

Properties


Property Name	Value
Start range	848644
Start range	.
Protein id	EWM24471.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100239g1.3869.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:849027..849203 -
CM002467.1	supercontig	CM002467.1:848644..848930 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Homology

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BLAST of EWM24471.1 vs. NCBI_GenBank
Match: gi|585105941|gb|EWM24471.1| (hypothetical protein Naga_100239g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 309.301 bits (791), Expect = 1.613e-106
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MSNIARWTCGSTGSGDDRLISVQRGYVCGKCTRYEDRSRKRRRDGMKVFLSCAIISLVLPRTLASGSMTTSSSISFVQKRGGFSPQSESLACTSPSSSPPSSSSAPPSSSSASPPPVHVRANPSEGEGGEGVAAGPIEGSLEDMRGYDAHPSMFA 155
            MSNIARWTCGSTGSGDDRLISVQRGYVCGKCTRYEDRSRKRRRDGMKVFLSCAIISLVLPRTLASGSMTTSSSISFVQKRGGFSPQSESLACTSPSSSPPSSSSAPPSSSSASPPPVHVRANPSEGEGGEGVAAGPIEGSLEDMRGYDAHPSMFA
Sbjct:    1 MSNIARWTCGSTGSGDDRLISVQRGYVCGKCTRYEDRSRKRRRDGMKVFLSCAIISLVLPRTLASGSMTTSSSISFVQKRGGFSPQSESLACTSPSSSPPSSSSAPPSSSSASPPPVHVRANPSEGEGGEGVAAGPIEGSLEDMRGYDAHPSMFA 155

The following BLAST results are available for this feature:

BLAST of EWM24471.1 vs. NCBI_GenBank

BLAST of EWM24471.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585105941\|gb\|EWM24471.1\|	1.613e-106	100.00	hypothetical protein Naga_100239g1, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6211	rna6211	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications