rna6210, rna6210 (mRNA) Nannochloropsis gaditana

Overview
Namerna6210
Unique Namerna6210
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length943
Alignment locationCM002467.1:847241..848543 -

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Properties
Property NameValue
Productproteasome subunit
Orig transcript idgnl|cribi|Naga_101991g1.8928.mrna
Orig protein idgnl|cribi|Naga_101991g1.8928
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:847241..848543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101991g1gene5999Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6210rna6210-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24478.1cds6195Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6210 ID=rna6210|Name=rna6210|organism=Nannochloropsis gaditana|type=mRNA|length=943bp
CAAAGCAAGCAATGCCAAGCGCTTGCACTCATACCAATTTATTTCCACTA
AGCATGCTGAGCCAATCGTAGCCTTTCGGGTTGCTCAAATGGCGTCTTTG
ACTTAACAACGCCAATTTTATCAGACAGCGTCATCTCGGTCTATCCTCCA
ACGCAAAGACATATTTGCCGAGCCGACAGGCGCGTGTTTAAAGCATGAGA
AATATATTTGAAAGGGACACTGTTCATTGACATGGCTAGAAATAGCTCAC
AGCATTCATTGTGGGTGGGGCATTTGTCATAAAATTGATGGTATCCGAGA
AAAAGACTGATTTCTTAAATTCCCCATGTCCCACTCACTTTCATCACTTT
TCGGTACGGAGGCGCAGTGGTAGGACGCGGCGTGGAATTTCAGACCATCA
CCACGCAGTGGTGAAAAATCGCAATTTGCGAGCTCTAATCAAGCGTCGAT
GAGGCCTATTTTCCTGCACCTTACCCCTGTCCTGTGCCCCATTTTTCTTC
TGGCCGTGGTGGTCAGTCTTGTCGAAGCGGGATGGCTGGGGTACCTCTTT
GGAGGCAAAGACGCGACGCCTACCGCCACGTTGACACAATCGCCGGCAAC
TCTTGAAGCCTGCGAGGCGGTGCTCGTCACAAACATGACTGAAACAGTCC
AGGAATCGGTCACAGACGCGGAAAGTCGCCTCTTGTCCTCCTCCCGGACT
ACCTTCCGAGCCGAACGGACGCAGACAATGCGGATAGAGAGTACGGAGGG
AGGGGAGGCGGGGGAGGAGGGAGGAATGGAAGGGAGGGAGGTAGATGCTC
GCTGCGATGGACATGGGGATGGAGAGGAAGCGGAGAGTGGGAGCAAGGAG
GGAGCGAGAGGGAGACGGAAGAGGGACGAGGGCAGCGGCCGGCGACGAGG
AAGAGAGGAGAAGGGGGCCTGTCTGCCGCTCACGACCCTATGG
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protein sequence of rna6210

>rna6210-protein ID=rna6210-protein|Name=rna6210|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREG
VVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGG
REGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS
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mRNA from alignment at CM002467.1:847241..848543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6210 ID=rna6210|Name=rna6210|organism=Nannochloropsis gaditana|type=mRNA|length=1303bp|location=Sequence derived from alignment at CM002467.1:847241..848543- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTCCCTTCTTCCCTCCCTCCCTTTCTCAA
AGGCTGTCAATCATGGACGGCCCCTGGTGGGGATCAAGACCAGAGAGGGG
GTTGTGCTCGTGGGGAGGAAATTCATTGAGTCCAAGAAACTTCAGGTCGG
CGTCTCTCCTCCCCCCCCCTTGTCAGCTCTCAGGCATATGGGCCTCATTC
TTTGCACCACACGTGCATGGTCCTTTCCTTTCCTTTCTGAGATATGCTTG
TGTCTTTTTTTGTTTCTGAGTCTTTGCGTCACATGGACTGGTATGCATCG
TCAATTCTTCCCTGTGCAATAGTCATAGATGTCTCAATCGCTTTCCCCCT
TCTGCTTTACGCGTAAACAGAACTCTCATGAAAATGTACGTGCATCCCTA
CATTTGTCCCTCATCTATGTGAATGTACATTCCTCCCTCCCTCTCTCTTT
CCCTCCCTCCCTCCCTCCCTCGACCCCGCCAGGATGCGAGGCTGCGCCAG
AAACTGTATCGTGTGGACCGGCACGTGCTTGTCGGGGTCACAGGTATGAC
GGCTGACGCCATGGCGCTGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGG
AGACATCATGGGTGGGAGATAGGAGGAGAGGGTCGTGTGAGAGTGGGATG
ATGAGGACAAGAGCCTTGACGGCCGTGGTTGAGTGGGGAAGAGGGGCCAG
GGCCCCTGCGTCCCCGTCGTGAGACGTCACAACCATCCAATTGATCCTAC
TGACCGCCCTCGACGACGAGTCTCCGGGGGGAATGGGAGGAGGATGGAGG
GAGGCATGCCTCAGTGCTTTGTCTGAGGGGCGGTGGGAGTTGGCTTATGG
ATGGACGCGGAGTGATAATGAGAGGGTTCAAGGGTACTCTATAGAGGAGG
ACGGGTTCCTAGTTGCCAGGCATCACCGGGCACGTAGGATCCCTCACACA
TGCGTCGCCCTCCCTCCCTCCCTCCCTCCCCTCCTCCCTCCTTCCCTCCC
TCCCTCCCTCAGGTCCGCCTCGCCCGCAGCTACGCGTCCGAGTACCAACG
GACCTACGGCGAGCCCATCCCCGTGCGGCATCTGACCGAGCACATCTGTG
ACGTCAAACATTCCTGCACGATGGTACCCCCACCCCCCTCCCTCTTTGTC
TCCCCTTGCATGCAACCTCTTCCGCATGCCGTGCTGCATGTTTTTTTTGA
ATGCCTTTCTGGAAACGCCACGAATCTGTTTTATATCGGACTATCAGCTC
CCT
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Coding sequence (CDS) from alignment at CM002467.1:847241..848543-

>rna6210 ID=rna6210|Name=rna6210|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002467.1:847241..848543- (Nannochloropsis gaditana)
GATGCGAGGCTGCGCCAGAAACTGTATCGTGTGGACCGGCACGTGCTTGT
CGGGGTCACAGGTATGACGGCTGACGCCATGGCGCTGGTAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGAGACATCATGGGTGGGAGATAGGAGGAGAGGG
TCGTGTGAGAGTGGGATGATGAGGACAAGAGCCTTGACGGCCGTGGTTGA
GTGGGGAAGAGGGGCCAGGGCCCCTGCGTCCCCGTCGTGATCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTTCCCTTCTTCCCTCCCTCCCTTTCTCAAAGGCTGTCAA
TCATGGACGGCCCCTGGTGGGGATCAAGACCAGAGAGGGGGTTGTGCTCG
TGGGGAGGAAATTCATTGAGTCCAAGAAACTTCAGGATGCGAGGCTGCGC
CAGAAACTGTATCGTGTGGACCGGCACGTGCTTGTCGGGGTCACAGGTAT
GACGGCTGACGCCATGGCGCTGGTAGGGAGGGAGGGAGGGAGGGAGGGAG
GGGAGACATCATGGGTGGGAGATAGGAGGAGAGGGTCGTGTGAGAGTGGG
ATGATGAGGACAAGAGCCTTGACGGCCGTGGTTGAGTGGGGAAGAGGGGC
CAGGGCCCCTGCGTCCCCGTCGTGATCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCC
CTTCTTCCCTCCCTCCCTTTCTCAAAGGCTGTCAATCATGGACGGCCCCT
GGTGGGGATCAAGACCAGAGAGGGGGTTGTGCTCGTGGGGAGGAAATTCA
TTGAGTCCAAGAAACTTCAG
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Synonyms
Publications