EWM24478.1, cds6195 (CDS) Nannochloropsis gaditana

Overview
NameEWM24478.1
Unique Namecds6195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:848349..848543 -
Alignment locationCM002467.1:847772..848011 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24478.1
Productproteasome subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_101991g1.8928.mrna
GbkeyCDS
End range.
End range848543
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:848349..848543 -
CM002467.1supercontigCM002467.1:847772..848011 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|585105949|gb|EWM24478.1| (proteasome subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 281.182 bits (718), Expect = 1.070e-95
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS 144
            SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS
Sbjct:    1 SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS 144          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|916501870|ref|XP_013351749.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria mitis] >gi|557174760|emb|CDJ29180.1| proteasome subunit alpha type 4, subunit, putative [Eimeria mitis])

HSP 1 Score: 64.3142 bits (155), Expect = 1.094e-9
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K I SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTIGILAKDGVVLAADKMITSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|1069841433|gb|OEH77497.1| (proteasome subunit alpha type [Cyclospora cayetanensis])

HSP 1 Score: 62.7734 bits (151), Expect = 3.827e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   22 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 85          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|915011432|ref|XP_013251418.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria acervulina] >gi|557124236|emb|CDI78356.1| proteasome subunit alpha type 4, subunit, putative [Eimeria acervulina])

HSP 1 Score: 62.7734 bits (151), Expect = 4.314e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRTKEKLYKVDNHVMCAVAGLTADANILINQ 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|915125233|ref|XP_013333880.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria maxima] >gi|557168144|emb|CDJ57230.1| proteasome subunit alpha type 4, subunit, putative [Eimeria maxima])

HSP 1 Score: 62.7734 bits (151), Expect = 4.972e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|545707974|ref|XP_005706300.1| (20S proteasome subunit alpha 3 [Galdieria sulphuraria] >gi|452822764|gb|EME29780.1| 20S proteasome subunit alpha 3 [Galdieria sulphuraria])

HSP 1 Score: 62.7734 bits (151), Expect = 4.972e-9
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A++H    VG+ ++EGVVL   K I SK L+ A+  +K+Y +D+HV   V G+TADA  L+GR
Sbjct:   26 EAISHAGAAVGVLSQEGVVLAAEKKIISKLLETAKSTEKMYAIDQHVACAVAGITADANILIGR 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|557154178|emb|CDI79528.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria praecox])

HSP 1 Score: 62.3882 bits (150), Expect = 5.848e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHERAKEKLYKVDNHVMCAVAGLTADANILINQ 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|557241709|emb|CDJ52940.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria brunetti])

HSP 1 Score: 62.7734 bits (151), Expect = 6.314e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   46 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 109          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|921121731|ref|XP_013435483.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria necatrix] >gi|557188717|emb|CDJ67016.1| proteasome subunit alpha type 4, subunit, putative [Eimeria necatrix])

HSP 1 Score: 62.3882 bits (150), Expect = 7.309e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDQGRSKEKLYKVDNHVMCAVAGLTADANILINQ 89          
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|916423146|ref|XP_013232804.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria tenella] >gi|557146910|emb|CDJ42054.1| proteasome subunit alpha type 4, subunit, putative [Eimeria tenella])

HSP 1 Score: 62.003 bits (149), Expect = 8.423e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
            +A+N+    +GI  ++GVVL   K + SK L   R ++KLY+VD HV+  V G+TADA  L+ +
Sbjct:   26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRSKEKLYKVDNHVMCAVAGLTADANILINQ 89          
The following BLAST results are available for this feature:
BLAST of EWM24478.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105949|gb|EWM24478.1|1.070e-95100.00proteasome subunit, partial [Nannochloropsis gadit... [more]
gi|916501870|ref|XP_013351749.1|1.094e-943.75proteasome subunit alpha type 4, subunit, putative... [more]
gi|1069841433|gb|OEH77497.1|3.827e-942.19proteasome subunit alpha type [Cyclospora cayetane... [more]
gi|915011432|ref|XP_013251418.1|4.314e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
gi|915125233|ref|XP_013333880.1|4.972e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
gi|545707974|ref|XP_005706300.1|4.972e-945.3120S proteasome subunit alpha 3 [Galdieria sulphura... [more]
gi|557154178|emb|CDI79528.1|5.848e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
gi|557241709|emb|CDJ52940.1|6.314e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
gi|921121731|ref|XP_013435483.1|7.309e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
gi|916423146|ref|XP_013232804.1|8.423e-942.19proteasome subunit alpha type 4, subunit, putative... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6210rna6210Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications