EWM24478.1, cds6195 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|585105949|gb|EWM24478.1| (proteasome subunit, partial [Nannochloropsis gaditana]) HSP 1 Score: 281.182 bits (718), Expect = 1.070e-95 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS 144
SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS
Sbjct: 1 SLPPSLPPSLPPSLPPSLPPSLPPSLLPSLPFSKAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGREGGREGGETSWVGDRRRGSCESGMMRTRALTAVVEWGRGARAPASPS 144
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|916501870|ref|XP_013351749.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria mitis] >gi|557174760|emb|CDJ29180.1| proteasome subunit alpha type 4, subunit, putative [Eimeria mitis]) HSP 1 Score: 64.3142 bits (155), Expect = 1.094e-9 Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K I SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTIGILAKDGVVLAADKMITSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|1069841433|gb|OEH77497.1| (proteasome subunit alpha type [Cyclospora cayetanensis]) HSP 1 Score: 62.7734 bits (151), Expect = 3.827e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 22 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 85
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|915011432|ref|XP_013251418.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria acervulina] >gi|557124236|emb|CDI78356.1| proteasome subunit alpha type 4, subunit, putative [Eimeria acervulina]) HSP 1 Score: 62.7734 bits (151), Expect = 4.314e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRTKEKLYKVDNHVMCAVAGLTADANILINQ 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|915125233|ref|XP_013333880.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria maxima] >gi|557168144|emb|CDJ57230.1| proteasome subunit alpha type 4, subunit, putative [Eimeria maxima]) HSP 1 Score: 62.7734 bits (151), Expect = 4.972e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|545707974|ref|XP_005706300.1| (20S proteasome subunit alpha 3 [Galdieria sulphuraria] >gi|452822764|gb|EME29780.1| 20S proteasome subunit alpha 3 [Galdieria sulphuraria]) HSP 1 Score: 62.7734 bits (151), Expect = 4.972e-9 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A++H VG+ ++EGVVL K I SK L+ A+ +K+Y +D+HV V G+TADA L+GR
Sbjct: 26 EAISHAGAAVGVLSQEGVVLAAEKKIISKLLETAKSTEKMYAIDQHVACAVAGITADANILIGR 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|557154178|emb|CDI79528.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria praecox]) HSP 1 Score: 62.3882 bits (150), Expect = 5.848e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHERAKEKLYKVDNHVMCAVAGLTADANILINQ 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|557241709|emb|CDJ52940.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria brunetti]) HSP 1 Score: 62.7734 bits (151), Expect = 6.314e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 46 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRAKEKLYKVDNHVMCAVAGLTADANILINQ 109
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|921121731|ref|XP_013435483.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria necatrix] >gi|557188717|emb|CDJ67016.1| proteasome subunit alpha type 4, subunit, putative [Eimeria necatrix]) HSP 1 Score: 62.3882 bits (150), Expect = 7.309e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDQGRSKEKLYKVDNHVMCAVAGLTADANILINQ 89
BLAST of EWM24478.1 vs. NCBI_GenBank
Match: gi|916423146|ref|XP_013232804.1| (proteasome subunit alpha type 4, subunit, putative [Eimeria tenella] >gi|557146910|emb|CDJ42054.1| proteasome subunit alpha type 4, subunit, putative [Eimeria tenella]) HSP 1 Score: 62.003 bits (149), Expect = 8.423e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 34 KAVNHGRPLVGIKTREGVVLVGRKFIESKKLQDARLRQKLYRVDRHVLVGVTGMTADAMALVGR 97
+A+N+ +GI ++GVVL K + SK L R ++KLY+VD HV+ V G+TADA L+ +
Sbjct: 26 EAINNASSTLGILAKDGVVLAADKMVTSKLLDHGRSKEKLYKVDNHVMCAVAGLTADANILINQ 89 The following BLAST results are available for this feature:
BLAST of EWM24478.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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