rna6208, rna6208 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6208
Unique Name	rna6208
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	994
Alignment location	CM002467.1:843003..844732 -

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Properties


Property Name	Value
Product	Protein of unknown function DUF1997
Orig transcript id	gnl\|cribi\|Naga_100633g1.3607.mrna
Orig protein id	gnl\|cribi\|Naga_100633g1.3607
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:843003..844732 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100633g1	gene5997	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6208	rna6208-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24481.1	cds6193	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:843003..844732-
coding sequence from alignment at CM002467.1:843003..844732-

mRNA sequence

>rna6208 ID=rna6208|Name=rna6208|organism=Nannochloropsis gaditana|type=mRNA|length=994bp
GACTGGTGAGAGATCATGGGATCCATAGAATGCGATCAAGGACGGGTTCC
ATGAGGATCGGACACATGAAAATCACGAATCAACCATTTTGAGGGATTGC
GTGATCAATTACCGCGCCGGTTAACAAAGAAAGATCACCCACAGAAGAGG
TAGGGATCATGTGATCGATTCAGTTCCAATCCAGATCCACATTTATCTAT
CTGATAAAGCGGACAACATTACTTCTTGCGGGTGCAATCTTTCTTATGAC
ATGTTCCCGGGGGATGATGGTGATTGGAATTGTGCGCGTATACAAAGCAA
GCAGCGCCATGTCCCCTTTGTATTTATCTCTTGTTTCTTTTCAAGATTAC
GTGGAACCATAGTTGGTGGGGACCGCCGGATACGTTCCCATGGCGTAGTG
AAGGTCCTTGGCAAGCCAATAGATGCGTGGCCGGGACGCGTCGTCGTTCG
CCACGAACTGCAAAACAAAAGCTGTATCTACCACCCCCGCCCAGTCGATT
ACTTCCCAAATACCCTCCTCCTCCGCGATCAAGATGTGCCAAGTCAGGAC
ATCGCGTGGCACCTGCCAACCTCGGCCCTCCCGCTCCTGGGGAACTTTAA
GATGGCTGTAGCGACGCATCAACACTTTCATGTGCGGCTCAAGTTGCCCA
GGCTCCTGCATGATGTCGTTATACTTCGCCGGAGCCTTAAATTTGGCCCA
AATTGCCCTAAATGAATCGGACGGATCTCCTCTTCACGACCACCTTTGAC
AAGCGCTAAAAGCAAACGAAATAGTTCAATTTGATGGGACGCATTTTGTT
GTATGGTGTGCAGATTTTTCAAAAACTGAAATGGTAAGCGTAAGCGAAAA
GAAAATTTTCCTCCCTTCGCGACACTATCGTGGAAATTGCACGTGGCACA
CTTAGAAACCAGCACACTTCATTCAGACTTAAATATTTTTTGTGTATAAC
GACCGAATTTCTTCAGCGCTAGCTAAGGAAAACTGACTAAATCT

protein sequence of rna6208

>rna6208-protein ID=rna6208-protein|Name=rna6208|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MAPIQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQ
EAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKP
GWMLVPSSMMNRVGSMVLHRILKKTLPEFLDRIKNGYTGWEGEMVV

mRNA from alignment at CM002467.1:843003..844732-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6208 ID=rna6208|Name=rna6208|organism=Nannochloropsis gaditana|type=mRNA|length=1730bp|location=Sequence derived from alignment at CM002467.1:843003..844732- (Nannochloropsis gaditana)
CGCGCAGTCCACACCGGCAAGGAGCGGTCTCTCCCCGCCTACTTCAACTC
CCAGGCCGCCCAACCCCACATTCTCAACGCGGACAACTTCCAGCAGGTGC
CGTGTCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCC
TCTGTCTCATGTTGGCCATTCTTTGGCCATTCTTTCCTGGCTCATCCTTC
TCTTCCGCTTTCCTTTTACCCTTCTTCCGAGTGCAGTCGTGCCACATTCG
ATATTCTCATCTTCCTCCCTCCTCTCCTCCCTCCCTTCTTCCTCTTTCCC
GCCCTCCCTCTCAGCTGACGCACGACACATTTAGGTGCGAGATGGCTCCC
ATCCAATTTTTTACTGCCTCCATTGTTCCCGTCGTCGATGTCCGGTGAGC
AATCTTCTTCCCCTTTCCTTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCT
TTCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTCTCTGCCGTCCGCCTCAG
GTCGCTCCTTTGCACTTTATGCTCCCGCCTTATCTCCCCTCTTTCTCGAG
CATGCTCTGTGTCACCGCGTTTCCTGTCTAGCTCAAAAATTTCTAAAAAA
ATTGTTCGAAACTCTTGCTGAGAAGAGCCACATGCCCGCACATGCATTGG
CAACCCCTCCCTTCCTCCCTCCCTCGCTCCCGCCTACCCTCTCCTCCTCT
CTCCTTAGACTCACCGTGGACGCTGTAGCAGGGACGGCTGTGATTCGCGC
AATTTCTGGGCAGGTCTGTCGCTTTGTCTATTTCTAGTCCTTCTCCCACT
AGAGACTTCAATCCTTTTCTTCCTTCCTCAATCCTTCCCTCTTTCCTTCC
CTCCTTCGCTCCCCCCCTTTCCCAAACCTTTTTTCCTCCTCCTACACCTT
TTTATTTCATCCATCTGAAGCGGATTTGACCCCATCCCCTCATCGCCGCC
CCTCTTCTCCTCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
CCTCCCCCTCCTCGTCCCCTCAGGTCAAGCACAGCACGAAGCCACTCGAT
CTTAAGGAAGCGCAGGAGGCAGGATACGTTCACACAGGTACCTCCCCTTC
CCTCCCGCCCCCTTTGTTCCTTCTCACCATGAGAGACCGTCCTCCTTGTC
ACCTACCCTCCCTCCCTCCCTCCCTCCCTCCCCCCGCCCTCGTCACAGGC
CCGGGGCGCTTCGACGAACTCTCTTTCCAGATGGACACCACCAACATCGT
CTCTTGGCAAAAGGTGCGCCACCCCGTCCTTCCCCCTCTCGCCACTCCAC
GCCCCTCTCTCTCTCCCACTCACCTGTCCTTTTCCTACCGCCCTACAGGT
GGATGATCGCACCGTTGCCCTCACGTCTCGCATTGAGATGGAGATCAGCA
TGGAGAAGCCGGGCTGGATGCTCGTGCCCTCCTCGATGGTAGGCTGGGAG
GGAGGGAGCGATGCCGGGGGTGAAGACAAAGTGCTTTAAAAATGAGGAGA
CGTCTTTTAATGCACGGCTCAGTGTTTCTTCCATCAATTTGTCACGACCA
CCTGACACAGTTTCTTCTCCTATGCTTTTCTTCCTCCTTTCCTCCTCTCG
CCCTCTCCCGTATCAGATGAACCGTGTGGGCTCCATGGTCCTGCATCGAA
TTTTGAAGAAAACTCTGCCTGAATTCCTTGACCGCATCAAAAATGGGTAC
ACGGGCTGGGAAGGGGAGATGGTGGTGTAA

Coding sequence (CDS) from alignment at CM002467.1:843003..844732-

>rna6208 ID=rna6208|Name=rna6208|organism=Nannochloropsis gaditana|type=CDS|length=2646bp|location=Sequence derived from alignment at CM002467.1:843003..844732- (Nannochloropsis gaditana)
ATGAACCGTGTGGGCTCCATGGTCCTGCATCGAATTTTGAAGAAAACTCT
GCCTGAATTCCTTGACCGCATCAAAAATGGGTACACGGGCTGGGAAGGGG
AGATGGTGGTGTAAGTGGATGATCGCACCGTTGCCCTCACGTCTCGCATT
GAGATGGAGATCAGCATGGAGAAGCCGGGCTGGATGCTCGTGCCCTCCTC
GATGGCCCGGGGCGCTTCGACGAACTCTCTTTCCAGATGGACACCACCAA
CATCGTCTCTTGGCAAAAGGTCAAGCACAGCACGAAGCCACTCGATCTTA
AGGAAGCGCAGGAGGCAGGATACGTTCACACAGACTCACCGTGGACGCTG
TAGCAGGGACGGCTGTGATTCGCGCAATTTCTGGGCAGATGGCTCCCATC
CAATTTTTTACTGCCTCCATTGTTCCCGTCGTCGATGTCCGATGAACCGT
GTGGGCTCCATGGTCCTGCATCGAATTTTGAAGAAAACTCTGCCTGAATT
CCTTGACCGCATCAAAAATGGGTACACGGGCTGGGAAGGGGAGATGGTGG
TGTAAGTGGATGATCGCACCGTTGCCCTCACGTCTCGCATTGAGATGGAG
ATCAGCATGGAGAAGCCGGGCTGGATGCTCGTGCCCTCCTCGATGGCCCG
GGGCGCTTCGACGAACTCTCTTTCCAGATGGACACCACCAACATCGTCTC
TTGGCAAAAGGTCAAGCACAGCACGAAGCCACTCGATCTTAAGGAAGCGC
AGGAGGCAGGATACGTTCACACAGACTCACCGTGGACGCTGTAGCAGGGA
CGGCTGTGATTCGCGCAATTTCTGGGCAGATGGCTCCCATCCAATTTTTT
ACTGCCTCCATTGTTCCCGTCGTCGATGTCCGATGAACCGTGTGGGCTCC
ATGGTCCTGCATCGAATTTTGAAGAAAACTCTGCCTGAATTCCTTGACCG
CATCAAAAATGGGTACACGGGCTGGGAAGGGGAGATGGTGGTGTAAGTGG
ATGATCGCACCGTTGCCCTCACGTCTCGCATTGAGATGGAGATCAGCATG
GAGAAGCCGGGCTGGATGCTCGTGCCCTCCTCGATGGCCCGGGGCGCTTC
GACGAACTCTCTTTCCAGATGGACACCACCAACATCGTCTCTTGGCAAAA
GGTCAAGCACAGCACGAAGCCACTCGATCTTAAGGAAGCGCAGGAGGCAG
GATACGTTCACACAGACTCACCGTGGACGCTGTAGCAGGGACGGCTGTGA
TTCGCGCAATTTCTGGGCAGATGGCTCCCATCCAATTTTTTACTGCCTCC
ATTGTTCCCGTCGTCGATGTCCGATGAACCGTGTGGGCTCCATGGTCCTG
CATCGAATTTTGAAGAAAACTCTGCCTGAATTCCTTGACCGCATCAAAAA
TGGGTACACGGGCTGGGAAGGGGAGATGGTGGTGTAAGTGGATGATCGCA
CCGTTGCCCTCACGTCTCGCATTGAGATGGAGATCAGCATGGAGAAGCCG
GGCTGGATGCTCGTGCCCTCCTCGATGGCCCGGGGCGCTTCGACGAACTC
TCTTTCCAGATGGACACCACCAACATCGTCTCTTGGCAAAAGGTCAAGCA
CAGCACGAAGCCACTCGATCTTAAGGAAGCGCAGGAGGCAGGATACGTTC
ACACAGACTCACCGTGGACGCTGTAGCAGGGACGGCTGTGATTCGCGCAA
TTTCTGGGCAGATGGCTCCCATCCAATTTTTTACTGCCTCCATTGTTCCC
GTCGTCGATGTCCGATGAACCGTGTGGGCTCCATGGTCCTGCATCGAATT
TTGAAGAAAACTCTGCCTGAATTCCTTGACCGCATCAAAAATGGGTACAC
GGGCTGGGAAGGGGAGATGGTGGTGTAAGTGGATGATCGCACCGTTGCCC
TCACGTCTCGCATTGAGATGGAGATCAGCATGGAGAAGCCGGGCTGGATG
CTCGTGCCCTCCTCGATGGCCCGGGGCGCTTCGACGAACTCTCTTTCCAG
ATGGACACCACCAACATCGTCTCTTGGCAAAAGGTCAAGCACAGCACGAA
GCCACTCGATCTTAAGGAAGCGCAGGAGGCAGGATACGTTCACACAGACT
CACCGTGGACGCTGTAGCAGGGACGGCTGTGATTCGCGCAATTTCTGGGC
AGATGGCTCCCATCCAATTTTTTACTGCCTCCATTGTTCCCGTCGTCGAT
GTCCGATGAACCGTGTGGGCTCCATGGTCCTGCATCGAATTTTGAAGAAA
ACTCTGCCTGAATTCCTTGACCGCATCAAAAATGGGTACACGGGCTGGGA
AGGGGAGATGGTGGTGTAAGTGGATGATCGCACCGTTGCCCTCACGTCTC
GCATTGAGATGGAGATCAGCATGGAGAAGCCGGGCTGGATGCTCGTGCCC
TCCTCGATGGCCCGGGGCGCTTCGACGAACTCTCTTTCCAGATGGACACC
ACCAACATCGTCTCTTGGCAAAAGGTCAAGCACAGCACGAAGCCACTCGA
TCTTAAGGAAGCGCAGGAGGCAGGATACGTTCACACAGACTCACCGTGGA
CGCTGTAGCAGGGACGGCTGTGATTCGCGCAATTTCTGGGCAGATGGCTC
CCATCCAATTTTTTACTGCCTCCATTGTTCCCGTCGTCGATGTCCG

Synonyms

Publications