EWM24481.1, cds6193 (CDS) Nannochloropsis gaditana

Overview
NameEWM24481.1
Unique Namecds6193
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:844339..844391 -
Alignment locationCM002467.1:843970..844024 -
Alignment locationCM002467.1:843646..843709 -
Alignment locationCM002467.1:843470..843534 -
Alignment locationCM002467.1:843295..843384 -
Alignment locationCM002467.1:843003..843116 -

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Properties
Property NameValue
Protein idEWM24481.1
ProductProtein of unknown function DUF1997
Orig transcript idgnl|cribi|Naga_100633g1.3607.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:844339..844391 -
CM002467.1supercontigCM002467.1:843970..844024 -
CM002467.1supercontigCM002467.1:843646..843709 -
CM002467.1supercontigCM002467.1:843470..843534 -
CM002467.1supercontigCM002467.1:843295..843384 -
CM002467.1supercontigCM002467.1:843003..843116 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018971DUF1997
Homology
BLAST of EWM24481.1 vs. NCBI_GenBank
Match: gi|585105954|gb|EWM24481.1| (Protein of unknown function DUF1997 [Nannochloropsis gaditana])

HSP 1 Score: 301.212 bits (770), Expect = 1.521e-103
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
Query:    1 MAPIQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQEAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKPGWMLVPSSMMNRVGSMVLHRILKKTLPEFLDRIKNGYTGWEGEMVV 146
            MAPIQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQEAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKPGWMLVPSSMMNRVGSMVLHRILKKTLPEFLDRIKNGYTGWEGEMVV
Sbjct:    1 MAPIQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQEAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKPGWMLVPSSMMNRVGSMVLHRILKKTLPEFLDRIKNGYTGWEGEMVV 146          
BLAST of EWM24481.1 vs. NCBI_GenBank
Match: gi|552815598|ref|XP_005844487.1| (hypothetical protein CHLNCDRAFT_138831 [Chlorella variabilis] >gi|307104130|gb|EFN52385.1| hypothetical protein CHLNCDRAFT_138831 [Chlorella variabilis])

HSP 1 Score: 61.2326 bits (147), Expect = 1.473e-8
Identity = 36/137 (26.28%), Postives = 63/137 (45.99%), Query Frame = 0
Query:    4 IQFFTASIVPVVDVRLTVDAVAGTAVIRAISGQVKHSTKPLDLKEAQEAGYVHTGPGRFDELSFQMDTTNIVSWQKVDDRTVALTSRIEMEISMEKPGWMLVPSSMMNRVGSMVLHRILKKTLPEFLDRIKNGYTGW 140
            ++ F+  + PV+ V +TV     T  +R +S ++K S              V     RFD        TN+V WQ+       L S   +++ ++ P W ++P+S + R G  V+ R+L+  +P FL ++   Y  W
Sbjct:   81 LKLFSLEVEPVITVSVTVQERGPT--VRLLSTKLKGSKA------------VEAANERFD-----ATMTNVVRWQEAPGGGKQLASDTFIQVQLQVPAWFVLPTSTIERTGGAVMARVLESAVPRFLQQLSADYAAW 198          
The following BLAST results are available for this feature:
BLAST of EWM24481.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105954|gb|EWM24481.1|1.521e-103100.00Protein of unknown function DUF1997 [Nannochlorops... [more]
gi|552815598|ref|XP_005844487.1|1.473e-826.28hypothetical protein CHLNCDRAFT_138831 [Chlorella ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6208rna6208Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications