rna6207, rna6207 (mRNA) Nannochloropsis gaditana

Overview
Namerna6207
Unique Namerna6207
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length441
Alignment locationCM002467.1:841947..842940 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100633g2.3606.mrna
Orig protein idgnl|cribi|Naga_100633g2.3606
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:841947..842940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100633g2gene5996Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6207rna6207-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24480.1cds6192Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6207 ID=rna6207|Name=rna6207|organism=Nannochloropsis gaditana|type=mRNA|length=441bp
TCAGCCTGTATTACGCTTGTAGTAACACGCAGCGCTTATTTAACAGATAT
GCCCGCCATGAAGAGCTCAACCGCTGGCAAAAAAATGAAAGGAGTCGGTA
AAGCCGCCGCAAACGGGGCTGGTCCTGCTTCCAAAGTAACCCCCAAGGTG
GAGGATATGGACAGGAAAGCTTTACAGACACTTGCCAAATCCCTGGGCTT
GAAAGCGAACGTTAAGACGGTGGAATTGATCGCGGCTATCCAGGAGCATT
ACCAGCATGGTGCCTTCACCGCCCCGCCCGCCTCGGTGGCCTTGTCTTCT
CCCTCTGCCGACGCTCTTCCCACAACTGCGGAGAGCAAGACATCGGGCCG
TGCGAGGAGCAGTCAGGAAAAGAGCGTGAAGGTGAAACAATCCGGGGGTG
AAGGGAAGGGTGGCATGGTTCTGGAGGCGTTATCGCGGTAA
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protein sequence of rna6207

>rna6207-protein ID=rna6207-protein|Name=rna6207|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MFPGDDGDWNCARIQSKQRHVPFVFISCFFSRLRGTIVGGDRRIRSHGVV
KVLGKPIDAWPGRVVVRHELQNKSCIYHPRPVDYFPNTLLLRDQDVPSQD
IAWHLPTSALPLLGNFKMAVATHQHFHVRLKLPRLLHDVVILRRSLKFGP
NCPK
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mRNA from alignment at CM002467.1:841947..842940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6207 ID=rna6207|Name=rna6207|organism=Nannochloropsis gaditana|type=mRNA|length=994bp|location=Sequence derived from alignment at CM002467.1:841947..842940+ (Nannochloropsis gaditana)
GACTGGTGAGAGATCATGGGATCCATAGAATGCGATCAAGGACGGGTTCC
ATGAGGATCGGACACATGAAAATCACGAATCAACCATTTTGAGGGATTGC
GTGATCAATTACCGCGCCGGTTAACAAAGAAAGATCACCCACAGAAGAGG
TAGGGATCATGTGATCGATTCAGTTCCAATCCAGATCCACATTTATCTAT
CTGATAAAGCGGACAACATTACTTCTTGCGGGTGCAATCTTTCTTATGAC
ATGTTCCCGGGGGATGATGGTGATTGGAATTGTGCGCGTATACAAAGCAA
GCAGCGCCATGTCCCCTTTGTATTTATCTCTTGTTTCTTTTCAAGATTAC
GTGGAACCATAGTTGGTGGGGACCGCCGGATACGTTCCCATGGCGTAGTG
AAGGTCCTTGGCAAGCCAATAGATGCGTGGCCGGGACGCGTCGTCGTTCG
CCACGAACTGCAAAACAAAAGCTGTATCTACCACCCCCGCCCAGTCGATT
ACTTCCCAaataccctcctcctccgcgatcAAGATGTGCCAAGTCAGGAC
ATCGCGTGGCACCTGCCAACCTCggccctcccgctcctgggGAACTTTAA
GATGGCTGTAGCGACGCATCAACACTTTCATGTGCGGCTCAAGTTGCCCA
GGCTCCTGCATGATGTCGTTATACTTCGCCGGAGCCTTAAATTTGGCCCA
AATTGCCCTAAATGAATCGGACGGATCTCCTCTTCACGACCACCTTTGAC
AAGCGCTAAAAGCAAACGAAATAGTTCAATTTGATGGGACGCATTTTGTT
GTATGGTGTGCAGATTTTTCAAAAACTGAAATGGTAAGCGTAAGCGAAAA
GAaaattttcctcccttcgcgaCACTATCGTGGAAATTGCACGTGGCACA
CTTAGAAACCAGCACACTTCATTCAGACTTAAATATTTTTTGTGTATAAC
GACCGAATTTCTTCAGCGCTAGCTAAGGAAAACTGACTAAATCT
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Coding sequence (CDS) from alignment at CM002467.1:841947..842940+

>rna6207 ID=rna6207|Name=rna6207|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at CM002467.1:841947..842940+ (Nannochloropsis gaditana)
ATGTTCCCGGGGGATGATGGTGATTGGAATTGTGCGCGTATACAAAGCAA
GCAGCGCCATGTCCCCTTTGTATTTATCTCTTGTTTCTTTTCAAGATTAC
GTGGAACCATAGTTGGTGGGGACCGCCGGATACGTTCCCATGGCGTAGTG
AAGGTCCTTGGCAAGCCAATAGATGCGTGGCCGGGACGCGTCGTCGTTCG
CCACGAACTGCAAAACAAAAGCTGTATCTACCACCCCCGCCCAGTCGATT
ACTTCCCAaataccctcctcctccgcgatcAAGATGTGCCAAGTCAGGAC
ATCGCGTGGCACCTGCCAACCTCggccctcccgctcctgggGAACTTTAA
GATGGCTGTAGCGACGCATCAACACTTTCATGTGCGGCTCAAGTTGCCCA
GGCTCCTGCATGATGTCGTTATACTTCGCCGGAGCCTTAAATTTGGCCCA
AATTGCCCTAAATGA
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Synonyms
Publications