rna6202, rna6202 (mRNA) Nannochloropsis gaditana

Overview
Namerna6202
Unique Namerna6202
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length561
Alignment locationCM002467.1:828013..828813 +

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Properties
Property NameValue
Productgamma complex associated protein 4
Orig transcript idgnl|cribi|Naga_101272g1.7597.mrna
Orig protein idgnl|cribi|Naga_101272g1.7597
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:828013..828813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101272g1gene5991Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6202rna6202-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24487.1cds6187Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6202 ID=rna6202|Name=rna6202|organism=Nannochloropsis gaditana|type=mRNA|length=561bp
GAACGGCTCGGGACAAGGGAAAAAAATATGTATTTAGAACATTTGCAGGC
TGGATAATTGGGAGAGAGGGGATAGATGGCGTCTAGCATTAGACTGCTTC
CCTCAGCTCTTAAAGCGAGGCATGCTGCCCTCTTTGCTCTCGGCATCGGG
GGAGCTGCAGGCGCGATCAGATACCAAACAGACGAAGGCACAAGGCGCTC
CGTCTATTTTTGGTCTAGGGCATTTCCCATCTACCTGCACTATCGCTACG
TGAAGAGTCAGGTGCAGCATTTACCGGAAGCAGAACAAGAGGAGGCCTAC
GCGCCTCTCCACCAGAAATATGCCCCGGAGGCGGTGGATATCATCTTGCA
TCTGAAGGGCTTCTACATCAAGATCGCACAAGTGGGCAGCACTCGGAGCG
ATTTCCTCCCCCAGGAGTACCTTTCGCGCCTCGAAATATTCCAAGGAGAC
ATTCCGTGCACGGAACCCTTCACGGCGATTCAAGACACAGTGGAGCGCTC
TCTGGGAAAGCCCCTGCCCGAGGTCTTCGCCGAGTTCGACCACATCCCCG
TGGGTGCAGCC
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protein sequence of rna6202

>rna6202-protein ID=rna6202-protein|Name=rna6202|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAE
KEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQG
PQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGR
EGDFHVLLPAVVGMVEKLGRRQCR
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mRNA from alignment at CM002467.1:828013..828813+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6202 ID=rna6202|Name=rna6202|organism=Nannochloropsis gaditana|type=mRNA|length=801bp|location=Sequence derived from alignment at CM002467.1:828013..828813+ (Nannochloropsis gaditana)
ATGCAGCATGAGGTCCTTTTGGCCGCCTTGGGCATCCCTGGGGACGTCAT
AATTCCCGTGCGACTTCCCggttcctccacctcctcctcttcctgctcct
ctctcaCGTATCAGGTGGCTCCGGACATCACTTTTTTAAGCGCCGGTAAG
TCTGTGAAAACAAAGTTGTTGGGACGACCGGACAATTTCATAAATTGGCA
GGGCTTGTGCTGGTCGGAACGCGCAGGAACTAACCTGGTTCGAGCCGAAA
GGTCACAAACCTGAGAATTGCTTTCTGTCCGTTTTCGCTCCCCCCCACGA
TATTGTCACGTGCAcagcggagaaggaaataATCAACCGCATCGTGTGCC
TGGGTGCCTATTATCATCGACTGGACGCCTTTGTTGCCGCACACCGATtc
ggagggggggacaaCGCGGACGTCCTCATAGGCAGACAGGGCACAGAGAC
TTCCCAAGAGGGGGACCAGGGGCCCCAAGGAAGCTTATATCTGCAGGCTT
TGGCGGTCGGAATTGAAGAGGGGCTTTTGCGACGGTACGTAGATGCCAGC
ACTACCGCGTGTCCACCGCGCGactcattcctcctccctcctccctccgc
ctaTGGCTTCGTtggcgcccctccctccgacacTTCAGGTATGCAGGTAC
CATCGCCGGATTGGAGCGAGCGATGGCGGCCGACCCTCGCCTGCCTCTGT
CTCACGCGCATCACACgttgggaagggaaggtgacTTCCACGTGCTCCTG
CCCGCCGTCgtggggatggtggagaagctgggaaggaggcagtgccggtg
a
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Coding sequence (CDS) from alignment at CM002467.1:828013..828813+

>rna6202 ID=rna6202|Name=rna6202|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at CM002467.1:828013..828813+ (Nannochloropsis gaditana)
ATGCAGCATGAGGTCCTTTTGGCCGCCTTGGGCATCCCTGGGGACGTCAT
AATTCCCGTGCGACTTCCCggttcctccacctcctcctcttcctgctcct
ctctcaCGTATCAGGTGGCTCCGGACATCACTTTTTTAAGCGCCGcggag
aaggaaataATCAACCGCATCGTGTGCCTGGGTGCCTATTATCATCGACT
GGACGCCTTTGTTGCCGCACACCGATtcggagggggggacaaCGCGGACG
TCCTCATAGGCAGACAGGGCACAGAGACTTCCCAAGAGGGGGACCAGGGG
CCCCAAGGAAGCTTATATCTGCAGGCTTTGGCGGTCGGAATTGAAGAGGG
GCTTTTGCGACGGTATGCAGGTACCATCGCCGGATTGGAGCGAGCGATGG
CGGCCGACCCTCGCCTGCCTCTGTCTCACGCGCATCACACgttgggaagg
gaaggtgacTTCCACGTGCTCCTGCCCGCCGTCgtggggatggtggagaa
gctgggaaggaggcagtgccggtgaATGCAGCATGAGGTCCTTTTGGCCG
CCTTGGGCATCCCTGGGGACGTCATAATTCCCGTGCGACTTCCCggttcc
tccacctcctcctcttcctgctcctctctcaCGTATCAGGTGGCTCCGGA
CATCACTTTTTTAAGCGCCGcggagaaggaaataATCAACCGCATCGTGT
GCCTGGGTGCCTATTATCATCGACTGGACGCCTTTGTTGCCGCACACCGA
TtcggagggggggacaaCGCGGACGTCCTCATAGGCAGACAGGGCACAGA
GACTTCCCAAGAGGGGGACCAGGGGCCCCAAGGAAGCTTATATCTGCAGG
CTTTGGCGGTCGGAATTGAAGAGGGGCTTTTGCGACGGTATGCAGGTACC
ATCGCCGGATTGGAGCGAGCGATGGCGGCCGACCCTCGCCTGCCTCTGTC
TCACGCGCATCACACgttgggaagggaaggtgacTTCCACGTGCTCCTGC
CCGCCGTCgtggggatggtggagaagctgggaaggaggcagtgccggtga
ATGCAGCATGAGGTCCTTTTGGCCGCCTTGGGCATCCCTGGGGACGTCAT
AATTCCCGTGCGACTTCCCggttcctccacctcctcctcttcctgctcct
ctctcaCGTATCAGGTGGCTCCGGACATCACTTTTTTAAGCGCCGcggag
aaggaaataATCAACCGCATCGTGTGCCTGGGTGCCTATTATCATCGACT
GGACGCCTTTGTTGCCGCACACCGATtcggagggggggacaaCGCGGACG
TCCTCATAGGCAGACAGGGCACAGAGACTTCCCAAGAGGGGGACCAGGGG
CCCCAAGGAAGCTTATATCTGCAGGCTTTGGCGGTCGGAATTGAAGAGGG
GCTTTTGCGACGGTATGCAGGTACCATCGCCGGATTGGAGCGAGCGATGG
CGGCCGACCCTCGCCTGCCTCTGTCTCACGCGCATCACACgttgggaagg
gaaggtgacTTCCACGTGCTCCTGCCCGCCGTCgtggggatggtggagaa
gctgggaaggaggcagtgccggtga
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Synonyms
Publications