EWM24487.1, cds6187 (CDS) Nannochloropsis gaditana

Overview
NameEWM24487.1
Unique Namecds6187
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:828013..828157 +
Alignment locationCM002467.1:828330..828546 +
Alignment locationCM002467.1:828651..828813 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24487.1
Productgamma complex associated protein 4
Orig transcript idgnl|cribi|Naga_101272g1.7597.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:828013..828157 +
CM002467.1supercontigCM002467.1:828330..828546 +
CM002467.1supercontigCM002467.1:828651..828813 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0000226microtubule cytoskeleton organization
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0000922spindle pole
GO:0005815microtubule organizing center
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR007259TUBGCP
Homology
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|585105964|gb|EWM24487.1| (gamma complex associated protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 351.673 bits (901), Expect = 1.360e-122
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR
Sbjct:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|553192902|ref|XP_005855666.1| (gamma-tubulin complex component 4 [Nannochloropsis gaditana CCMP526] >gi|422293384|gb|EKU20684.1| gamma-tubulin complex component 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 352.829 bits (904), Expect = 1.694e-122
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR
Sbjct:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1179526076|ref|XP_020684188.1| (gamma-tubulin complex component 4 [Dendrobium catenatum])

HSP 1 Score: 82.4185 bits (202), Expect = 3.845e-15
Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVR------LPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HE+LLA +G  GD++I  R         S   S      T+++APD++F+  +E+++I R++ LG YY  LD F A HR       A      Q TE  +E     + S+Y +A+A GI E +L  Y   +  +E+ + +DP   L+   H L +   F V+LP +  ++ ++ R   R
Sbjct:    1 MLHELLLALVGYTGDLVIDERDERETLFDSSDPISDFPVEPTFKLAPDLSFIQPSERDVIERLLPLGFYYRELDHFAAKHRHLSSFQLAKHYPHAQATEVQKESSG--KASVYRRAIANGIIE-ILSVYRSAVLQVEQNLLSDPLPILATVTHGLNK---FDVVLPPIYELIAEIEREDIR 175          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1175840033|ref|XP_020573543.1| (gamma-tubulin complex component 4 isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 78.1814 bits (191), Expect = 9.548e-14
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HE+ LA LG  GD+II  R       S   +  T+++APD++ +  +E++II R++ LG YY  LD F A HR       A      Q +E  ++     +GS+Y +A+A GI E +L  Y  ++  +E+ + +DP +P+  A  TLG    + VL+P +  ++ ++ R   R
Sbjct:    1 MLHELQLALLGYTGDLIIDERDGRFDAISDFPNEPTFKLAPDLSSIQPSERDIIERLLPLGFYYRALDHFAAKHRHLSSSQFAQYFPHTQASELQKKSPG--KGSVYRRAIANGIVE-ILSVYRSSVLQVEQNLLSDP-MPIL-ATVTLGLN-KYAVLMPPIYELIAEIEREDIR 169          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1175840035|ref|XP_020573544.1| (gamma-tubulin complex component 4 isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 78.1814 bits (191), Expect = 1.027e-13
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HE+ LA LG  GD+II  R       S   +  T+++APD++ +  +E++II R++ LG YY  LD F A HR       A      Q +E  ++     +GS+Y +A+A GI E +L  Y  ++  +E+ + +DP +P+  A  TLG    + VL+P +  ++ ++ R   R
Sbjct:    1 MLHELQLALLGYTGDLIIDERDGRFDAISDFPNEPTFKLAPDLSSIQPSERDIIERLLPLGFYYRALDHFAAKHRHLSSSQFAQYFPHTQASELQKKSPG--KGSVYRRAIANGIVE-ILSVYRSSVLQVEQNLLSDP-MPIL-ATVTLGLN-KYAVLMPPIYELIAEIEREDIR 169          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|116788323|gb|ABK24836.1| (unknown [Picea sitchensis])

HSP 1 Score: 77.7962 bits (190), Expect = 1.365e-13
Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSS------CSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HE+LLA +G  GD +I  R    +  +         +  T+++APD+TFL  +E+EII R++ LG YY  LD F    R      +     +     + +G +    S+Y +ALA GI E +L  Y   +  +E+ + ADP   L+     L +   F VL+P +  +V ++ R   R
Sbjct:    1 MLHELLLALVGCTGDFVIDEREEDENADADPEREDAIAAECTFKLAPDLTFLKNSEREIIERLLHLGFYYRELDRFAVKSRNLSWITSTYPDFQIQNPMALKGRKTFPASVYRRALANGISE-VLSIYRSAVLQVEQNLLADPVPVLASVTQGLNK---FEVLMPPLHALVLEVEREDVR 176          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|340370172|ref|XP_003383620.1| (PREDICTED: gamma-tubulin complex component 4-like [Amphimedon queenslandica])

HSP 1 Score: 77.411 bits (189), Expect = 1.859e-13
Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGR 170
            M HE+LL   G PGDV +  R  G            Y++ PDI ++  +E  +IN +V LG+YY  L  FV+            ++       S+E   G    LYL+AL  GI   +L  Y   +  +E+   ADP LPLSH  H   R   F  +LP++   V  + R
Sbjct:    1 MHHEILLTLSGCPGDVFMTSRETGH-----------YEIIPDIPYIHPSEVSLINGLVSLGSYYKFLIDFVSKQ-------TSAIVNLATPPDSEENQSG----LYLRALGFGINN-VLEPYRMRLVEVEQECIADPHLPLSHIKH---RFEQFQFILPSLDTTVRHIIR 144          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1133494186|ref|XP_019863534.1| (PREDICTED: gamma-tubulin complex component 4-like, partial [Amphimedon queenslandica])

HSP 1 Score: 72.4034 bits (176), Expect = 3.071e-13
Identity = 49/146 (33.56%), Postives = 68/146 (46.58%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHH 146
            M HE+LL   G PGDV +  R  G            Y++ PDI ++  +E  +IN +V LG+YY  L  FV+            ++       S+E   G    LYL+AL  GI   +L  Y   +  +E+   ADP LPLSH  H
Sbjct:    1 MHHEILLTLSGCPGDVFMTSRETGH-----------YEIIPDIPYIHPSEVSLINGLVSLGSYYKFLIDFVSK-------QTSAIVNLATPPDSEENQLG----LYLRALGFGI-NNVLEPYRMRLVEVEQECIADPHLPLSHIKH 123          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1137190562|gb|OMO63867.1| (Spc97/Spc98 [Corchorus capsularis])

HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13
Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSS------TSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HE+LLA +G  GD+II  R    S        +      ++++APDI+F+  AE+++I R++ LG YY  LD F A  R      +ADV    + +E S+   Q P  S+Y +A+A G+ E +L  Y   +  +E+ + ++    L+     L +   F VLLP +  ++ ++ R   R
Sbjct:    1 MLHELLLALVGYTGDLIIDEREHQKSLGVNLSPDAPISDQRSFKLAPDISFIDPAERDLIERLITLGFYYRELDRFAAKSRNLSWIRSADVSPSDRASELSKPKAQKP--SVYRRAIANGLVE-ILSLYRSAVLQIEQKLLSETMPILATVTQGLNK---FFVLLPPLYDLILEIERDDIR 175          
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|703068591|ref|XP_010088277.1| (Gamma-tubulin complex component 4-like protein [Morus notabilis] >gi|587842926|gb|EXB33502.1| Gamma-tubulin complex component 4-like protein [Morus notabilis])

HSP 1 Score: 75.8702 bits (185), Expect = 5.962e-13
Identity = 62/183 (33.88%), Postives = 94/183 (51.37%), Query Frame = 0
Query:    1 MQHEVLLAALGIPGDVIIPVRLPGSS------TSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR---FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
            M HEVLLA LG  GD+II  R   +S        +      T+++APDI+FL  +E+++I RIV LG YY  LD F    R   +   +NA  L     +E S+ G  G + S+Y +A+A GI E +L  Y   +  +E+ + ++    L+     L +   F VLLP +  +V ++ R   R
Sbjct:    1 MLHEVLLALLGYTGDLIIDERDHRNSLGIALSPDAPIADEPTFKLAPDISFLQPSERDLIERIVTLGFYYRELDRFATKSRNLSWIRSENASPLA--TISELSK-GKTGKKQSVYRRAIANGIVE-ILSVYRSAVLHIEQKLLSETVPILATVTQGLNK---FFVLLPPLYELVLEIERNDIR 176          
The following BLAST results are available for this feature:
BLAST of EWM24487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105964|gb|EWM24487.1|1.360e-122100.00gamma complex associated protein 4 [Nannochloropsi... [more]
gi|553192902|ref|XP_005855666.1|1.694e-122100.00gamma-tubulin complex component 4 [Nannochloropsis... [more]
gi|1179526076|ref|XP_020684188.1|3.845e-1531.49gamma-tubulin complex component 4 [Dendrobium cate... [more]
gi|1175840033|ref|XP_020573543.1|9.548e-1432.57gamma-tubulin complex component 4 isoform X1 [Phal... [more]
gi|1175840035|ref|XP_020573544.1|1.027e-1332.57gamma-tubulin complex component 4 isoform X2 [Phal... [more]
gi|116788323|gb|ABK24836.1|1.365e-1330.56unknown [Picea sitchensis][more]
gi|340370172|ref|XP_003383620.1|1.859e-1332.35PREDICTED: gamma-tubulin complex component 4-like ... [more]
gi|1133494186|ref|XP_019863534.1|3.071e-1333.56PREDICTED: gamma-tubulin complex component 4-like,... [more]
gi|1137190562|gb|OMO63867.1|3.401e-1330.94Spc97/Spc98 [Corchorus capsularis][more]
gi|703068591|ref|XP_010088277.1|5.962e-1333.88Gamma-tubulin complex component 4-like protein [Mo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6202rna6202Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications