EWM24487.1, cds6187 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|585105964|gb|EWM24487.1| (gamma complex associated protein 4 [Nannochloropsis gaditana]) HSP 1 Score: 351.673 bits (901), Expect = 1.360e-122 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR Sbjct: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|553192902|ref|XP_005855666.1| (gamma-tubulin complex component 4 [Nannochloropsis gaditana CCMP526] >gi|422293384|gb|EKU20684.1| gamma-tubulin complex component 4 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 352.829 bits (904), Expect = 1.694e-122 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR Sbjct: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1179526076|ref|XP_020684188.1| (gamma-tubulin complex component 4 [Dendrobium catenatum]) HSP 1 Score: 82.4185 bits (202), Expect = 3.845e-15 Identity = 57/181 (31.49%), Postives = 92/181 (50.83%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVR------LPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HE+LLA +G GD++I R S S T+++APD++F+ +E+++I R++ LG YY LD F A HR A Q TE +E + S+Y +A+A GI E +L Y + +E+ + +DP L+ H L + F V+LP + ++ ++ R R Sbjct: 1 MLHELLLALVGYTGDLVIDERDERETLFDSSDPISDFPVEPTFKLAPDLSFIQPSERDVIERLLPLGFYYRELDHFAAKHRHLSSFQLAKHYPHAQATEVQKESSG--KASVYRRAIANGIIE-ILSVYRSAVLQVEQNLLSDPLPILATVTHGLNK---FDVVLPPIYELIAEIEREDIR 175
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1175840033|ref|XP_020573543.1| (gamma-tubulin complex component 4 isoform X1 [Phalaenopsis equestris]) HSP 1 Score: 78.1814 bits (191), Expect = 9.548e-14 Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HE+ LA LG GD+II R S + T+++APD++ + +E++II R++ LG YY LD F A HR A Q +E ++ +GS+Y +A+A GI E +L Y ++ +E+ + +DP +P+ A TLG + VL+P + ++ ++ R R Sbjct: 1 MLHELQLALLGYTGDLIIDERDGRFDAISDFPNEPTFKLAPDLSSIQPSERDIIERLLPLGFYYRALDHFAAKHRHLSSSQFAQYFPHTQASELQKKSPG--KGSVYRRAIANGIVE-ILSVYRSSVLQVEQNLLSDP-MPIL-ATVTLGLN-KYAVLMPPIYELIAEIEREDIR 169
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1175840035|ref|XP_020573544.1| (gamma-tubulin complex component 4 isoform X2 [Phalaenopsis equestris]) HSP 1 Score: 78.1814 bits (191), Expect = 1.027e-13 Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HE+ LA LG GD+II R S + T+++APD++ + +E++II R++ LG YY LD F A HR A Q +E ++ +GS+Y +A+A GI E +L Y ++ +E+ + +DP +P+ A TLG + VL+P + ++ ++ R R Sbjct: 1 MLHELQLALLGYTGDLIIDERDGRFDAISDFPNEPTFKLAPDLSSIQPSERDIIERLLPLGFYYRALDHFAAKHRHLSSSQFAQYFPHTQASELQKKSPG--KGSVYRRAIANGIVE-ILSVYRSSVLQVEQNLLSDP-MPIL-ATVTLGLN-KYAVLMPPIYELIAEIEREDIR 169
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|116788323|gb|ABK24836.1| (unknown [Picea sitchensis]) HSP 1 Score: 77.7962 bits (190), Expect = 1.365e-13 Identity = 55/180 (30.56%), Postives = 88/180 (48.89%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSS------CSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HE+LLA +G GD +I R + + + T+++APD+TFL +E+EII R++ LG YY LD F R + + + +G + S+Y +ALA GI E +L Y + +E+ + ADP L+ L + F VL+P + +V ++ R R Sbjct: 1 MLHELLLALVGCTGDFVIDEREEDENADADPEREDAIAAECTFKLAPDLTFLKNSEREIIERLLHLGFYYRELDRFAVKSRNLSWITSTYPDFQIQNPMALKGRKTFPASVYRRALANGISE-VLSIYRSAVLQVEQNLLADPVPVLASVTQGLNK---FEVLMPPLHALVLEVEREDVR 176
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|340370172|ref|XP_003383620.1| (PREDICTED: gamma-tubulin complex component 4-like [Amphimedon queenslandica]) HSP 1 Score: 77.411 bits (189), Expect = 1.859e-13 Identity = 55/170 (32.35%), Postives = 78/170 (45.88%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGR 170 M HE+LL G PGDV + R G Y++ PDI ++ +E +IN +V LG+YY L FV+ ++ S+E G LYL+AL GI +L Y + +E+ ADP LPLSH H R F +LP++ V + R Sbjct: 1 MHHEILLTLSGCPGDVFMTSRETGH-----------YEIIPDIPYIHPSEVSLINGLVSLGSYYKFLIDFVSKQ-------TSAIVNLATPPDSEENQSG----LYLRALGFGINN-VLEPYRMRLVEVEQECIADPHLPLSHIKH---RFEQFQFILPSLDTTVRHIIR 144
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1133494186|ref|XP_019863534.1| (PREDICTED: gamma-tubulin complex component 4-like, partial [Amphimedon queenslandica]) HSP 1 Score: 72.4034 bits (176), Expect = 3.071e-13 Identity = 49/146 (33.56%), Postives = 68/146 (46.58%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSSTSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHRFGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHH 146 M HE+LL G PGDV + R G Y++ PDI ++ +E +IN +V LG+YY L FV+ ++ S+E G LYL+AL GI +L Y + +E+ ADP LPLSH H Sbjct: 1 MHHEILLTLSGCPGDVFMTSRETGH-----------YEIIPDIPYIHPSEVSLINGLVSLGSYYKFLIDFVSK-------QTSAIVNLATPPDSEENQLG----LYLRALGFGI-NNVLEPYRMRLVEVEQECIADPHLPLSHIKH 123
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|1137190562|gb|OMO63867.1| (Spc97/Spc98 [Corchorus capsularis]) HSP 1 Score: 76.6406 bits (187), Expect = 3.401e-13 Identity = 56/181 (30.94%), Postives = 93/181 (51.38%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSS------TSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR-FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HE+LLA +G GD+II R S + ++++APDI+F+ AE+++I R++ LG YY LD F A R +ADV + +E S+ Q P S+Y +A+A G+ E +L Y + +E+ + ++ L+ L + F VLLP + ++ ++ R R Sbjct: 1 MLHELLLALVGYTGDLIIDEREHQKSLGVNLSPDAPISDQRSFKLAPDISFIDPAERDLIERLITLGFYYRELDRFAAKSRNLSWIRSADVSPSDRASELSKPKAQKP--SVYRRAIANGLVE-ILSLYRSAVLQIEQKLLSETMPILATVTQGLNK---FFVLLPPLYDLILEIERDDIR 175
BLAST of EWM24487.1 vs. NCBI_GenBank
Match: gi|703068591|ref|XP_010088277.1| (Gamma-tubulin complex component 4-like protein [Morus notabilis] >gi|587842926|gb|EXB33502.1| Gamma-tubulin complex component 4-like protein [Morus notabilis]) HSP 1 Score: 75.8702 bits (185), Expect = 5.962e-13 Identity = 62/183 (33.88%), Postives = 94/183 (51.37%), Query Frame = 0 Query: 1 MQHEVLLAALGIPGDVIIPVRLPGSS------TSSSSCSSLTYQVAPDITFLSAAEKEIINRIVCLGAYYHRLDAFVAAHR---FGGGDNADVLIGRQGTETSQEGDQGPQGSLYLQALAVGIEEGLLRRYAGTIAGLERAMAADPRLPLSHAHHTLGREGDFHVLLPAVVGMVEKLGRRQCR 174 M HEVLLA LG GD+II R +S + T+++APDI+FL +E+++I RIV LG YY LD F R + +NA L +E S+ G G + S+Y +A+A GI E +L Y + +E+ + ++ L+ L + F VLLP + +V ++ R R Sbjct: 1 MLHEVLLALLGYTGDLIIDERDHRNSLGIALSPDAPIADEPTFKLAPDISFLQPSERDLIERIVTLGFYYRELDRFATKSRNLSWIRSENASPLA--TISELSK-GKTGKKQSVYRRAIANGIVE-ILSVYRSAVLHIEQKLLSETVPILATVTQGLNK---FFVLLPPLYELVLEIERNDIR 176 The following BLAST results are available for this feature:
BLAST of EWM24487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|