rna620, rna620 (mRNA) Nannochloropsis gaditana

Overview
Namerna620
Unique Namerna620
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1179
Alignment locationCM002456.1:9748..10995 -

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Properties
Property NameValue
Productexosome complex exonuclease rrp41
Orig transcript idgnl|cribi|Naga_100225g3.3531.mrna
Orig protein idgnl|cribi|Naga_100225g3.3531
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:9748..10995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100225g3gene596Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30053.1cds620Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna620rna620-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna620 ID=rna620|Name=rna620|organism=Nannochloropsis gaditana|type=mRNA|length=1179bp
ATCATAGAATCACGCACTCAATCATTCAGCGTGGCAAAAAGCACCGACCG
TCTGTACTCGAATGTATGCGGCGTCGTTCGTAGGGAGGAGGTTAAGCCAA
GACCCTCGTACTACATGGTTTGAGACTTGCTGCCGCTGGGGCGCATTTCA
AGCCTGCAGGCATGGCAGTTGACTTCAAGAGACTTTTTGCTCTATCGACC
CCTGTCCTCCAGCTGTTTTTTAACATCTTCTGCCTTCCAGTCGCATTTGC
GCATCATGCACGTCATGGCGTGTCTTCCACACCTGCCTTCCAACCGTCAG
GCTCAGGGGCTTTACAAATCTCGCGCAAGGCTTCCTTGGCAGTGACTCCT
GTTGCCCTCCTAGGCCTTATGCCTCCTGTCAGCGTTGCCTCCTCAACCAC
CCGAACGGCTCCACCTTCTCTACCAAGAGAGGTAGAGGGTCGACCGACGC
TACGCGAGAAAGGCCGTCCTCCACTCCTCGAGGCCTTAGTGTATCTGCCC
AAAGGTGTTAATTATTGGGGCCAACTTCTGCCTGAGAGCAAGAACTCAGC
TCCGGACAGTATAGCAATCGCAGGCACGGGCACTGAAGCCTTGTTTCTTA
CTGCTTCTTTTCAGAATAAGCTTATTTTGGGCGCGCGCGTGCCCATGCAG
GGTATCATGTTCCCTTTCTTGGCACAGTTTTACGAGGATAACATTTTGGG
CGGCAAAAACATATGGGAAGGTGTCAAGTCCAAGGACCTCGTGGTTCGGG
CCCGTGTGTGTCCAACTGGTAGCTATCCTCCATGCAACGTCCCCCTCTTG
AAAGCTGCGTCACTTTCCAAGTTCTTTCCGGAGGTGCGTGACCCGAACAC
GCCCGAGAGTGCCGAGGTCATCGCCCGTAACGTCCGCATCGGCGCGAGCT
TGATGCTGCAGCCGGTCACCGAATCCACGACGTTAGAGCGAATGCGGGTT
ATGGATGGAGGCTTAGACAGAATAAGGAGAGAGTTTTGTGAATTGAAAGG
GTAGCATGAGTAAAATAATGCAACGAGGGGTAGACAAGAAAAATGGGCCA
TGCCGATGACACGCGATGTTGGAGCTCTTTCTTTTGCGGATAATCTATTT
ACACAACTCTCGGACGCCAGGATGTAAGAGCAGGTGGGGACGTATTTCTT
TAAACAACGGCTTGAGGTCAAGGGCCCCG
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protein sequence of rna620

>rna620-protein ID=rna620-protein|Name=rna620|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEV
LAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEA
SLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDA
GVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILI
QCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR
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mRNA from alignment at CM002456.1:9748..10995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna620 ID=rna620|Name=rna620|organism=Nannochloropsis gaditana|type=mRNA|length=1248bp|location=Sequence derived from alignment at CM002456.1:9748..10995- (Nannochloropsis gaditana)
GTGGTTGTCCGTGGAATGGAACAAGTCACGAGGATACTGCCTCGCCTCGC
CGACCCCAACCAGCGGTCCCCAGGTGCCTGCCAGCATCCTGCTCGACTTC
ACAGACCCATTCCATTTTACAAATACAGTGGTATAGGTCACACGTCTCCT
GAGGTCGAATTGCAACGTTCTGAGCCCCGTGCTCCTTTCCTGCGGACATT
TCTTAGATTCCTGTTACTGCCTCCCCTCTCGCTTCTGCCTTCGTCGGGTC
ACGCGGCTGCTGCCATTAAGCGTCATGCGCCGAGGCGCTGGGGAATGGGT
GTCCCTTGCAGGCTTACGAACCGATGGACGGCGGCCAAATGAGCTTCGAC
GCGTGCATTGTACATTAGGCACCTACTCCAATGCGGATGGCTCGGCGTCC
TTGAAACAAGGACAGACGGAGGTGCTGGCCATCGTTCACGGTCCCCACGA
AGTAACAAGACGTAGTGAGGTACAGCACGACAAATGCATTATTGAGTGCG
AATTCTACAGGACTCCCTTTTCCGGGTTTGACCGTAAAAAACGCAGGCCA
ACGGATCGGGCAAGTTTAGAAGCTTCGTTGGCTCTTAAACAGACTTTCGA
GACCGCGGTCATGCGGAATCTATACCCACGAACACAGGTAGACATCCAAG
TGTACGTGTTACAAGGCGACGGCTCTATTTTGCCCACGGCCATCAACGCC
GTGTCCCTAGCGCTGGTGGATGCGGGCGTTGCTATGAAAGAAATGGTAAC
CGCTTGCTCTGTCGCTCTCTTGGACAAGCAGCCCGTGCTCGACGTTACTT
ACAAAGAGCAAAGCTCTGGTGGGGCGTACATGCCACTGGCCGCCTTTCCT
ATTCACGGGGAGATTATTTTGATACAGTGTGAGGCCCGTTTGGAGGGCGA
GCGCCTTGAGGAAATGATGCTTACGGCGATGGAGGGCAGCCGTCAGGTCT
CTCAGCTATTTCAGACGCAAGTCAAAGAGTACACAAGACGTTTGGCAGGT
GCGCGACTAGCCCTTCCCAGGTAGCTGTAGTTTCTAGGATGGTTGAGTAA
AAGCGGCATGCTCGTTCAGAGAGGGTCAGGGTGCTTTCAGTCAAAGGGGA
TGACAAGATGCCATAGCGGGGCCCTTGACCTCAAGCCGTTGTTTAAAGAA
ATACGTCCCCACCTGCTCTTACATCCTGGCGTCCGAGAGTTGTGTAAATA
GATTATCCGCAAAAGAAAGAGCTCCAACATCGCGTGTCATCGGCATGG
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Coding sequence (CDS) from alignment at CM002456.1:9748..10995-

>rna620 ID=rna620|Name=rna620|organism=Nannochloropsis gaditana|type=CDS|length=750bp|location=Sequence derived from alignment at CM002456.1:9748..10995- (Nannochloropsis gaditana)
ATGCGCCGAGGCGCTGGGGAATGGGTGTCCCTTGCAGGCTTACGAACCGA
TGGACGGCGGCCAAATGAGCTTCGACGCGTGCATTGTACATTAGGCACCT
ACTCCAATGCGGATGGCTCGGCGTCCTTGAAACAAGGACAGACGGAGGTG
CTGGCCATCGTTCACGGTCCCCACGAAGTAACAAGACGTAGTGAGGTACA
GCACGACAAATGCATTATTGAGTGCGAATTCTACAGGACTCCCTTTTCCG
GGTTTGACCGTAAAAAACGCAGGCCAACGGATCGGGCAAGTTTAGAAGCT
TCGTTGGCTCTTAAACAGACTTTCGAGACCGCGGTCATGCGGAATCTATA
CCCACGAACACAGGTAGACATCCAAGTGTACGTGTTACAAGGCGACGGCT
CTATTTTGCCCACGGCCATCAACGCCGTGTCCCTAGCGCTGGTGGATGCG
GGCGTTGCTATGAAAGAAATGGTAACCGCTTGCTCTGTCGCTCTCTTGGA
CAAGCAGCCCGTGCTCGACGTTACTTACAAAGAGCAAAGCTCTGGTGGGG
CGTACATGCCACTGGCCGCCTTTCCTATTCACGGGGAGATTATTTTGATA
CAGTGTGAGGCCCGTTTGGAGGGCGAGCGCCTTGAGGAAATGATGCTTAC
GGCGATGGAGGGCAGCCGTCAGGTCTCTCAGCTATTTCAGACGCAAGTCA
AAGAGTACACAAGACGTTTGGCAGGTGCGCGACTAGCCCTTCCCAGGTAG
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Synonyms
Publications