EWM30053.1, cds620 (CDS) Nannochloropsis gaditana

Overview
NameEWM30053.1
Unique Namecds620
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:9972..10721 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30053.1
Productexosome complex exonuclease rrp41
Orig transcript idgnl|cribi|Naga_100225g3.3531.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:9972..10721 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR027408PNPase/RNase_PH_dom
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
Homology
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|553187149|ref|XP_005854552.1| (exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >gi|585112683|gb|EWM30053.1| exosome complex exonuclease rrp41 [Nannochloropsis gaditana])

HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249
            MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR
Sbjct:    1 MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|298709840|emb|CBJ26180.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 237.654 bits (605), Expect = 2.660e-75
Identity = 121/240 (50.42%), Postives = 169/240 (70.42%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLA 246
            +++SLAGLR DGRR  E+RRV    G +  ADGSA L+ GQT+++AIV GP EVTRR + ++D  I+ CE+   PFSG +RKKRRPT+R  +E +LA+K+ FE A+M +LYPRTQ+DI ++V+Q DG +LP  INA SLALVDAGVAM ++V ACS   LD  PV+D+ Y EQ+ GG Y+P+A  P   +++L + E+RL  E  EE++  A +  +QV ++ +  VKE+    AGA L+
Sbjct:    6 DFISLAGLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEH----AGALLS 241          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1133464432|ref|XP_019852927.1| (PREDICTED: exosome complex component RRP41-like [Amphimedon queenslandica])

HSP 1 Score: 219.55 bits (558), Expect = 3.441e-68
Identity = 101/233 (43.35%), Postives = 155/233 (66.52%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRR 239
            E++S  GLR+DGRRP ELR + C +     ADGSA L+QG T V+A V+GPH+V+RRSE QHDK  I C+F    FS  +RKKR   D++ LE SLALK+TFE A++ + YP +++DI V +LQ DGS    +INA+++AL+DAG+ MK+ V A SV L++  P++D+ Y E+   G  + +   P  G+I+ +Q  +RL  + +E+++   M G+++V  +  T +K++  +
Sbjct:    5 EYLSPEGLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDVSRRSEAQHDKAFINCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIFVQILQSDGSDKAVSINAITMALIDAGIPMKDYVCATSVTLINDTPIVDLNYFEERGPGPELIVGTLPKSGKIVFLQVNSRLHIDNMEKVLKEGMNGNQRVHTILDTLIKKHLEK 237          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1176108737|ref|XP_020625302.1| (exosome complex component RRP41-like [Orbicella faveolata])

HSP 1 Score: 221.476 bits (563), Expect = 5.950e-68
Identity = 100/232 (43.10%), Postives = 157/232 (67.67%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
            E +S  GLR DGRRP+ELR++ C +G +  ADGSA ++ G T+ LA V+GPHEVT ++++ HD+ ++ C+F    FS  +RKKR   DR S E S+ +++TFE A++  LYPR+Q+DI V +LQ DGS     INA +LAL+DAG+ MK+ V+AC+V  ++ +P++D+ Y E+S GG  + LA  P  G+I++ Q ++RL  + LE+++  A +G   +  L +  V +Y++
Sbjct:   81 EILSPEGLRLDGRRPHELRKIVCRMGVFKQADGSAYIEMGNTKALATVYGPHEVTNKAKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVGFINDKPLMDINYLEESFGGPQLGLAVLPKSGKIVMFQMDSRLHVDNLEKVLDLAKKGCTDIHILLRQTVHDYSQ 312          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1005428911|ref|XP_015752184.1| (PREDICTED: exosome complex component RRP41-like [Acropora digitifera])

HSP 1 Score: 216.468 bits (550), Expect = 5.403e-67
Identity = 100/232 (43.10%), Postives = 154/232 (66.38%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
            + +S  GLR DGRRP+ELR++   +G +  ADGSA ++ G T+ LA V+GPHEVT +S++ HD+ ++ C+F    FS  +RKKR   DR S E SL +++TFE A++  LYPR+Q+DI V +LQ DGS     INA +LAL+DAG+ MK+ V+AC+V+ ++ +P++D+ Y E+S GG  + LA  P  G I++ Q  +RL  + LE+++  A +G   +  L +  V E+ +
Sbjct:    5 DILSPEGLRLDGRRPHELRKIVFRMGVFKQADGSAYIEMGNTKALATVYGPHEVTTKSKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSLLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVSFVNDKPLMDINYLEESFGGPQLSLAVLPKSGNIVMFQMNSRLHVDNLEKVLDLAKKGCTDIHALQRQTVHEFLK 236          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|241119397|ref|XP_002402568.1| (exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] >gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis])

HSP 1 Score: 214.157 bits (544), Expect = 4.200e-66
Identity = 101/238 (42.44%), Postives = 157/238 (65.97%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGA 243
            E +S  G R DGR+PNE R++ C LG +S ADGSA ++QG  +VLA V+GPHE    RS   HD+ ++ C+F    FS F+RK+R   D+ S E +L ++QTFE  ++  LYPR+Q+DI V VLQ DG  L   +NA +LAL+DAG+A+K+ V ACSV  +D  P++D++  E+S+ G  + +A  P   +I+L++  +R+  + LE+M+  AM+G   +  +F ++VKE+T ++  +
Sbjct:    5 ELLSDEGYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDLHAIFDSRVKEHTAQVGSS 242          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|470322561|ref|XP_004349273.1| (exosome component 4 [Capsaspora owczarzaki ATCC 30864] >gi|765550765|gb|KJE91386.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 213.001 bits (541), Expect = 1.848e-65
Identity = 100/232 (43.10%), Postives = 155/232 (66.81%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
            E+VS  GLR DGRRPNELRR+   +G +  ADGSA ++QG T++LA V+GPHEV+R+++  HD+ II CE+    F+  +RKK   TD+ +L+ + A++  FE AVM  LYPR+Q+DI + VLQ DG      INA +LAL+DAG+AMK+ V ACSV  +D  P+LD+ Y E S+GG  + +A      + +L++ ++RL  +R ++++  A++G + +  +  + + E T+
Sbjct:    7 EFVSPEGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAMVERTK 238          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|899144998|ref|NP_001297907.1| (exosome complex component RRP41 [Esox lucius] >gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius])

HSP 1 Score: 211.846 bits (538), Expect = 3.286e-65
Identity = 102/236 (43.22%), Postives = 152/236 (64.41%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLA 241
            E +S  G R DGR+  ELR+V   +G ++ ADGSA ++QG T+ LA+V+GPHEV   RS+  HD+ +I C++    FS  +RK+R   DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG      +NA +LA++DAG+ M++ V AC+   +D+ P+ D+ + E+S GG  + LA  P  G I L+Q +ARL  + LE +M  AM   + VS++    V+++ + ++
Sbjct:    5 ELLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQVVRQHLQEVS 240          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1158941307|ref|XP_020319059.1| (exosome complex component RRP41 [Oncorhynchus kisutch] >gi|1211330545|ref|XP_021444945.1| exosome complex component RRP41 [Oncorhynchus mykiss] >gi|642129538|emb|CDQ58665.1| unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 211.46 bits (537), Expect = 5.478e-65
Identity = 103/236 (43.64%), Postives = 152/236 (64.41%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLA 241
            E +S  G R DGR+  ELR+V   +G ++ ADGSA ++QG T+ LA+V+GPHEV   RS+  HD+ +I C++    FS  +RK+R   DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG      +NA +LA+VDAG+ M++ V AC+   +D+ P+ D+ + E+S GG  + LA  P  G I L+Q +ARL  + LE +M  AM   + VS++    V+++ + ++
Sbjct:    5 ELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQEVS 240          
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|213514504|ref|NP_001134304.1| (Exosome complex exonuclease RRP41 [Salmo salar] >gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar])

HSP 1 Score: 211.075 bits (536), Expect = 6.959e-65
Identity = 103/231 (44.59%), Postives = 149/231 (64.50%), Query Frame = 0
Query:    7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEY 236
            E +S  G R DGR+  ELR+V   +G ++ ADGSA ++QG T+ LA+V+GPHEV   RS+  HD+ +I C++    FS  +RK+R   DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG      +NA +LA+VDAG+ M++ V AC+   +D+ P+ D+ + E+S GG  + LA  P  G I L+Q +ARL  + LE +M  AM   + VS++    V+++
Sbjct:    5 ELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQH 235          
The following BLAST results are available for this feature:
BLAST of EWM30053.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187149|ref|XP_005854552.1|0.000e+0100.00exosome complex component RRP41 [Nannochloropsis g... [more]
gi|298709840|emb|CBJ26180.1|2.660e-7550.42conserved unknown protein [Ectocarpus siliculosus][more]
gi|1133464432|ref|XP_019852927.1|3.441e-6843.35PREDICTED: exosome complex component RRP41-like [A... [more]
gi|1176108737|ref|XP_020625302.1|5.950e-6843.10exosome complex component RRP41-like [Orbicella fa... [more]
gi|1005428911|ref|XP_015752184.1|5.403e-6743.10PREDICTED: exosome complex component RRP41-like [A... [more]
gi|241119397|ref|XP_002402568.1|4.200e-6642.44exosomal 3'-5' exoribonuclease complex, subunit Rr... [more]
gi|470322561|ref|XP_004349273.1|1.848e-6543.10exosome component 4 [Capsaspora owczarzaki ATCC 30... [more]
gi|899144998|ref|NP_001297907.1|3.286e-6543.22exosome complex component RRP41 [Esox lucius] >gi|... [more]
gi|1158941307|ref|XP_020319059.1|5.478e-6543.64exosome complex component RRP41 [Oncorhynchus kisu... [more]
gi|213514504|ref|NP_001134304.1|6.959e-6544.59Exosome complex exonuclease RRP41 [Salmo salar] >g... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna620rna620Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications