EWM30053.1, cds620 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|553187149|ref|XP_005854552.1| (exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >gi|585112683|gb|EWM30053.1| exosome complex exonuclease rrp41 [Nannochloropsis gaditana]) HSP 1 Score: 514.612 bits (1324), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 1 MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249
MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR
Sbjct: 1 MRRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|298709840|emb|CBJ26180.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 237.654 bits (605), Expect = 2.660e-75 Identity = 121/240 (50.42%), Postives = 169/240 (70.42%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLA 246
+++SLAGLR DGRR E+RRV G + ADGSA L+ GQT+++AIV GP EVTRR + ++D I+ CE+ PFSG +RKKRRPT+R +E +LA+K+ FE A+M +LYPRTQ+DI ++V+Q DG +LP INA SLALVDAGVAM ++V ACS LD PV+D+ Y EQ+ GG Y+P+A P +++L + E+RL E EE++ A + +QV ++ + VKE+ AGA L+
Sbjct: 6 DFISLAGLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEH----AGALLS 241
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1133464432|ref|XP_019852927.1| (PREDICTED: exosome complex component RRP41-like [Amphimedon queenslandica]) HSP 1 Score: 219.55 bits (558), Expect = 3.441e-68 Identity = 101/233 (43.35%), Postives = 155/233 (66.52%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRR 239
E++S GLR+DGRRP ELR + C + ADGSA L+QG T V+A V+GPH+V+RRSE QHDK I C+F FS +RKKR D++ LE SLALK+TFE A++ + YP +++DI V +LQ DGS +INA+++AL+DAG+ MK+ V A SV L++ P++D+ Y E+ G + + P G+I+ +Q +RL + +E+++ M G+++V + T +K++ +
Sbjct: 5 EYLSPEGLRSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGPHDVSRRSEAQHDKAFINCQFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIFVQILQSDGSDKAVSINAITMALIDAGIPMKDYVCATSVTLINDTPIVDLNYFEERGPGPELIVGTLPKSGKIVFLQVNSRLHIDNMEKVLKEGMNGNQRVHTILDTLIKKHLEK 237
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1176108737|ref|XP_020625302.1| (exosome complex component RRP41-like [Orbicella faveolata]) HSP 1 Score: 221.476 bits (563), Expect = 5.950e-68 Identity = 100/232 (43.10%), Postives = 157/232 (67.67%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
E +S GLR DGRRP+ELR++ C +G + ADGSA ++ G T+ LA V+GPHEVT ++++ HD+ ++ C+F FS +RKKR DR S E S+ +++TFE A++ LYPR+Q+DI V +LQ DGS INA +LAL+DAG+ MK+ V+AC+V ++ +P++D+ Y E+S GG + LA P G+I++ Q ++RL + LE+++ A +G + L + V +Y++
Sbjct: 81 EILSPEGLRLDGRRPHELRKIVCRMGVFKQADGSAYIEMGNTKALATVYGPHEVTNKAKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVGFINDKPLMDINYLEESFGGPQLGLAVLPKSGKIVMFQMDSRLHVDNLEKVLDLAKKGCTDIHILLRQTVHDYSQ 312
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1005428911|ref|XP_015752184.1| (PREDICTED: exosome complex component RRP41-like [Acropora digitifera]) HSP 1 Score: 216.468 bits (550), Expect = 5.403e-67 Identity = 100/232 (43.10%), Postives = 154/232 (66.38%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
+ +S GLR DGRRP+ELR++ +G + ADGSA ++ G T+ LA V+GPHEVT +S++ HD+ ++ C+F FS +RKKR DR S E SL +++TFE A++ LYPR+Q+DI V +LQ DGS INA +LAL+DAG+ MK+ V+AC+V+ ++ +P++D+ Y E+S GG + LA P G I++ Q +RL + LE+++ A +G + L + V E+ +
Sbjct: 5 DILSPEGLRLDGRRPHELRKIVFRMGVFKQADGSAYIEMGNTKALATVYGPHEVTTKSKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSLLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVSFVNDKPLMDINYLEESFGGPQLSLAVLPKSGNIVMFQMNSRLHVDNLEKVLDLAKKGCTDIHALQRQTVHEFLK 236
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|241119397|ref|XP_002402568.1| (exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis] >gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative [Ixodes scapularis]) HSP 1 Score: 214.157 bits (544), Expect = 4.200e-66 Identity = 101/238 (42.44%), Postives = 157/238 (65.97%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGA 243
E +S G R DGR+PNE R++ C LG +S ADGSA ++QG +VLA V+GPHE RS HD+ ++ C+F FS F+RK+R D+ S E +L ++QTFE ++ LYPR+Q+DI V VLQ DG L +NA +LAL+DAG+A+K+ V ACSV +D P++D++ E+S+ G + +A P +I+L++ +R+ + LE+M+ AM+G + +F ++VKE+T ++ +
Sbjct: 5 ELLSDEGYRLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLVNCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDGGTLSVCVNAATLALIDAGIALKDYVCACSVGFIDGVPLVDISSIEESNRGPELTVAVLPKSQQIVLLEMSSRVHVDNLEKMLDAAMKGCTDLHAIFDSRVKEHTAQVGSS 242
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|470322561|ref|XP_004349273.1| (exosome component 4 [Capsaspora owczarzaki ATCC 30864] >gi|765550765|gb|KJE91386.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 213.001 bits (541), Expect = 1.848e-65 Identity = 100/232 (43.10%), Postives = 155/232 (66.81%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTR 238
E+VS GLR DGRRPNELRR+ +G + ADGSA ++QG T++LA V+GPHEV+R+++ HD+ II CE+ F+ +RKK TD+ +L+ + A++ FE AVM LYPR+Q+DI + VLQ DG INA +LAL+DAG+AMK+ V ACSV +D P+LD+ Y E S+GG + +A + +L++ ++RL +R ++++ A++G + + + + + E T+
Sbjct: 7 EFVSPEGLRIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIINCEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGGNRAVCINAATLALMDAGIAMKDFVCACSVGCIDDTPLLDINYIEDSAGGPDLTVAVLARSRKTVLVEMDSRLHIDRFDDVLRLAIDGCQAIHSILDSAMVERTK 238
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|899144998|ref|NP_001297907.1| (exosome complex component RRP41 [Esox lucius] >gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]) HSP 1 Score: 211.846 bits (538), Expect = 3.286e-65 Identity = 102/236 (43.22%), Postives = 152/236 (64.41%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLA 241
E +S G R DGR+ ELR+V +G ++ ADGSA ++QG T+ LA+V+GPHEV RS+ HD+ +I C++ FS +RK+R DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG +NA +LA++DAG+ M++ V AC+ +D+ P+ D+ + E+S GG + LA P G I L+Q +ARL + LE +M AM + VS++ V+++ + ++
Sbjct: 5 ELLSDQGYRLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVIDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDQVVRQHLQEVS 240
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|1158941307|ref|XP_020319059.1| (exosome complex component RRP41 [Oncorhynchus kisutch] >gi|1211330545|ref|XP_021444945.1| exosome complex component RRP41 [Oncorhynchus mykiss] >gi|642129538|emb|CDQ58665.1| unnamed protein product [Oncorhynchus mykiss]) HSP 1 Score: 211.46 bits (537), Expect = 5.478e-65 Identity = 103/236 (43.64%), Postives = 152/236 (64.41%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLA 241
E +S G R DGR+ ELR+V +G ++ ADGSA ++QG T+ LA+V+GPHEV RS+ HD+ +I C++ FS +RK+R DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG +NA +LA+VDAG+ M++ V AC+ +D+ P+ D+ + E+S GG + LA P G I L+Q +ARL + LE +M AM + VS++ V+++ + ++
Sbjct: 5 ELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQEVS 240
BLAST of EWM30053.1 vs. NCBI_GenBank
Match: gi|213514504|ref|NP_001134304.1| (Exosome complex exonuclease RRP41 [Salmo salar] >gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]) HSP 1 Score: 211.075 bits (536), Expect = 6.959e-65 Identity = 103/231 (44.59%), Postives = 149/231 (64.50%), Query Frame = 0
Query: 7 EWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEV-TRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEY 236
E +S G R DGR+ ELR+V +G ++ ADGSA ++QG T+ LA+V+GPHEV RS+ HD+ +I C++ FS +RK+R DR S E SL LKQTFE AV+ NLYPR+Q+DI V +LQ DG +NA +LA+VDAG+ M++ V AC+ +D+ P+ D+ + E+S GG + LA P G I L+Q +ARL + LE +M AM + VS++ V+++
Sbjct: 5 ELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESGGGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQH 235 The following BLAST results are available for this feature:
BLAST of EWM30053.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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