rna6193, rna6193 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6193
Unique Name	rna6193
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1888
Alignment location	CM002467.1:812205..813343 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100883g1.3081.mrna
Orig protein id	gnl\|cribi\|Naga_100883g1.3081
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:812205..813343 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100883g1	gene5983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6193	rna6193-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24495.1	cds6178	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:812205..813343-
coding sequence from alignment at CM002467.1:812205..813343-

mRNA sequence

>rna6193 ID=rna6193|Name=rna6193|organism=Nannochloropsis gaditana|type=mRNA|length=1888bp
AAGCCCGCAAGCTTCCCGCCCCGGCCTACCAGTGGCAGTCGCCTTAACAA
CACGGTATCTTCCCCCGCTCGTCCTCCAAGCTCCCCCCCCTCGTGCCGCC
TCCACGCCCCTCGCCGCGGACGGAAAACCGACGAAGCCCTTCCTATGCCC
CTCCCTCGTCCCCTTCCTCCCCTCCTCCCTTCTCCTCCACCTCGACCTCC
CCCCCACCTTCCCGAGAGCGTCGCTACGGGAAACGCCCTTCCTCCCTCGA
TCCCTCCCTCCTCCCCTCCTGTCATTCGCTTTCCCCACCCCAACCTCAGC
TGGCTCGACCACACCACCAGCCACCACCACCACCATCACCACAACCACAG
ACACAACACATGCGAAGGAAAAATTCCCTCACCCATCGCCTAGCCCCCCT
GTTCCTTAGAGACCCTTCTCCCCCCGGCAGGGAAGGAGGGAAGGAGGGAG
GGGCGGAGGGCGGGAGGGAGGGAGGGCCGGGCGTGGGTGGCCACGGTCAG
TCGGCCGCACCGGTGCGGGAAATGTCCTTGACGCGCCCATCTAGACTCGG
GTTGTGAGACGGGGCGGAAGGGGTGGGGGGATGGCAGGAAGGAGGGCGGG
ACAGGGTAAAGAGGACTGCCAAAAGGAGTGGAACACTACAGCCGCCGAGA
AGGTTCATGGACAGGAGGAATCGAACATAAAATTGAAGATGGGATGAAAT
GTATGAAATGTAAAATGATGCGACGGATGTCATATACTGCATGTGAATCG
ACCAGGGACAGGCCAGAGTCAGGAGCTGGGAGATAGCCCTAATTCGAACC
CTAATTCGAACCCTAACCCTATCCCTAGCCCTAACCCGAACCCAAAGAGA
CGTGAGAGGCGTCCGACGGGAGGGCTGTGCATTGAAACCAAAATGACTGA
AATGAAAAAATGGGATCTGCGTATTTTGAGAATGTGTGGGGGGGGCGTGG
AGGCGGAAAAACTTTTGACCACGTCCTTTATGGCGAGGAAGAGGCAGAGC
CGATGCCGAAGGCGAAGGGGAACGACAGGCGCAGGAAGGGGAATAGCACA
GCCGAGAGAGGAGCGTAAACCGGAGTGGTTAAGAGCACAACGATAAAGGA
TAGGGATCGGTAAGCGATTTCAAAAAAAAGAAACTTTCCACGCTGTCGTG
ATTACTTGGGAGGAAAATCATGCCCCGGTTACCTCTCTGAGTCTCTGTCG
TATTGCAAGCAACCCCCCTCGTCTTGACCCTTGGGGGTGCGTCGACACAC
TGGCCGAAAGCTACGATGGAAGGATCGTTGTGTATTGTGTGTGGAACGAG
AGGGATCGGTTTGTACGTCGATGGCGTCGGCTTGATTGCCGCTCCTGGCA
GGCAGAGCAGAGGGTCGCGGGGCCGAAGGAGCGACCATTGGGAGCGCAAC
GCGTGCAGATCCGTGCAAGCAACCTAGGATTCTAATCAGTGTGGAGAGCG
ATCGAAGCTTTGCGTCCAACTTGCCATGATGAACCAGAAAAGAAAGCCGA
TGTCAGGAGAAAAACGTCTGTGCTCGTCCCAAAAGCCGACACACGATGAC
AGGAAGGTCTGGGTAGGAAGACATTGACAGAAGGAAAAAAGGAATCTGCG
GAAAAGAAGACGGGAAGGAGGAGGGAGACAGCGAAGCTAACATGAGAGCA
TTCTGAACGGACCTTCTAGTCTACTTGTTGGGGTGAGAAATCCGGATCGC
TTTATTTTCCCTCTCGGGCTGCATGAACGTGCCAACGCGCGTCGATGTCT
TCAGCTTTCCTTTCGGGAGGAATCCTGATTCACAAGGGGGGGGGAGGGAT
AGCTCCCTGCCGAGGAGAGGATGTGCTCGACACCGAAGCCGGCGGGAATT
CCCCAATCACCGAATACAAAATCCTTCGCGCTTGCTCC

protein sequence of rna6193

>rna6193-protein ID=rna6193-protein|Name=rna6193|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MSETRMLVHRHPFFTNSSRQPHRRGACTLSTLSVALVSHGGRGGVWEGWY
MCMWVLAETLPARPRCAWLRVSGPADEIRRAGRGQTGASQQTGRPRDGRR
CGARNRPYTVPLPRAHRPLLGNPPMRELLEHLFGILPSWIATAHASKRR

mRNA from alignment at CM002467.1:812205..813343-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6193 ID=rna6193|Name=rna6193|organism=Nannochloropsis gaditana|type=mRNA|length=1139bp|location=Sequence derived from alignment at CM002467.1:812205..813343- (Nannochloropsis gaditana)
CCCCAGGCGTGATGGACATCACATGTTCTTACTGTCTTGCTGCTTGCTGA
GAAAGTGAAGTTTCGCGCGAGCTCTCAATGTCCGAGACCAGAATGCTTGT
TCATCGGCATCCATTTTTCACGAATTCTTCACGTCAACCTCACAGGAGAG
GTGCCTGCACACTGTCCACACTCTCTGTCGCCCTTGTCAGCCATGGTGGG
CGTGGAGGAGTGTGGGAAGGATGGTACATGTGCATGTGGGTTTTGGCGGA
AACTCTCCCTGCTCGGCCGAGGTAAGTAAAGCGGACGAACAGAAACCTCG
AAGCATGTGAAAGCGCCTGACCGAAGTAAATGCCATCATCCTGGCCTGTA
TGCTCTGTCTAGGTGCGCATGGCTCCGTGTATCTGGGCCGGCTGACGAAA
TCAGGAGAGCTGGTCGCGGTCAAACAGGTAGGACATAAATGAACATAAGA
AAATTCACTCTACCCCCCGGCAGTCTTTGCTTCGCTTCTGAGACGGAAAT
CGCCCCGCTTATTGCGCTCCTCTATGTCTCTTTGCCCCCCCCATCCTTTG
CTATCATGCAGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGT
AGGGCCCTTATTTTCCCTGCTGTCCGCGGACAGCCGGCGATGTCGGAGTG
TTCCCCGCCGCCCTTCCTTCGCGCCTCTTCATTCCTCCCTCCCTCTCCTT
CTCCTCCCTTACCGAATCCACAGGCGCTGTGGTGCAAGAAATCGGCCTTA
CACGGTCCCTCTCCCACGTGCACATCGTCCGCTACTTGGGAACCCACCAA
TGCGGGAGCTGCTTGAACATCTTTTTGGGTGAGTATGCGGACGAGGAAGT
CCGAGAAGAGGGCGAAGGACGCCAGTAATTGAGAGGAAGGGGGCACTTCA
TTACGATACATACATGAAGGAGGAAGCGGTGGAGGGCAGGGAGGGGGGGA
GGGGAGGGGAAGGGAGCGAAAGAAGGGCCCCTCCCACAAAATCCTGGCAT
CCTCACGCCCTCCCATCTCATCACAGAATACTGCCCTCGTGGATCGCTAC
GGCACATGCTTCAAAGCGAAGGTAGGTGCCTTCACCCTGTCCTTCGTCGG
CGGCGCGTCCTCCTATTCACTACCTCCCTCCCTCCTCCC

Coding sequence (CDS) from alignment at CM002467.1:812205..813343-

>rna6193 ID=rna6193|Name=rna6193|organism=Nannochloropsis gaditana|type=CDS|length=2250bp|location=Sequence derived from alignment at CM002467.1:812205..813343- (Nannochloropsis gaditana)
AATACTGCCCTCGTGGATCGCTACGGCACATGCTTCAAAGCGAAGGTAGG
CGCTGTGGTGCAAGAAATCGGCCTTACACGGTCCCTCTCCCACGTGCACA
TCGTCCGCTACTTGGGAACCCACCAATGCGGGAGCTGCTTGAACATCTTT
TTGGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGTGCGCATG
GCTCCGTGTATCTGGGCCGGCTGACGAAATCAGGAGAGCTGGTCGCGGTC
AAACAGATGTCCGAGACCAGAATGCTTGTTCATCGGCATCCATTTTTCAC
GAATTCTTCACGTCAACCTCACAGGAGAGGTGCCTGCACACTGTCCACAC
TCTCTGTCGCCCTTGTCAGCCATGGTGGGCGTGGAGGAGTGTGGGAAGGA
TGGTACATGTGCATGTGGGTTTTGGCGGAAACTCTCCCTGCTCGGCCGAG
AATACTGCCCTCGTGGATCGCTACGGCACATGCTTCAAAGCGAAGGTAGG
CGCTGTGGTGCAAGAAATCGGCCTTACACGGTCCCTCTCCCACGTGCACA
TCGTCCGCTACTTGGGAACCCACCAATGCGGGAGCTGCTTGAACATCTTT
TTGGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGTGCGCATG
GCTCCGTGTATCTGGGCCGGCTGACGAAATCAGGAGAGCTGGTCGCGGTC
AAACAGATGTCCGAGACCAGAATGCTTGTTCATCGGCATCCATTTTTCAC
GAATTCTTCACGTCAACCTCACAGGAGAGGTGCCTGCACACTGTCCACAC
TCTCTGTCGCCCTTGTCAGCCATGGTGGGCGTGGAGGAGTGTGGGAAGGA
TGGTACATGTGCATGTGGGTTTTGGCGGAAACTCTCCCTGCTCGGCCGAG
AATACTGCCCTCGTGGATCGCTACGGCACATGCTTCAAAGCGAAGGTAGG
CGCTGTGGTGCAAGAAATCGGCCTTACACGGTCCCTCTCCCACGTGCACA
TCGTCCGCTACTTGGGAACCCACCAATGCGGGAGCTGCTTGAACATCTTT
TTGGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGTGCGCATG
GCTCCGTGTATCTGGGCCGGCTGACGAAATCAGGAGAGCTGGTCGCGGTC
AAACAGATGTCCGAGACCAGAATGCTTGTTCATCGGCATCCATTTTTCAC
GAATTCTTCACGTCAACCTCACAGGAGAGGTGCCTGCACACTGTCCACAC
TCTCTGTCGCCCTTGTCAGCCATGGTGGGCGTGGAGGAGTGTGGGAAGGA
TGGTACATGTGCATGTGGGTTTTGGCGGAAACTCTCCCTGCTCGGCCGAG
AATACTGCCCTCGTGGATCGCTACGGCACATGCTTCAAAGCGAAGGTAGG
CGCTGTGGTGCAAGAAATCGGCCTTACACGGTCCCTCTCCCACGTGCACA
TCGTCCGCTACTTGGGAACCCACCAATGCGGGAGCTGCTTGAACATCTTT
TTGGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGTGCGCATG
GCTCCGTGTATCTGGGCCGGCTGACGAAATCAGGAGAGCTGGTCGCGGTC
AAACAGATGTCCGAGACCAGAATGCTTGTTCATCGGCATCCATTTTTCAC
GAATTCTTCACGTCAACCTCACAGGAGAGGTGCCTGCACACTGTCCACAC
TCTCTGTCGCCCTTGTCAGCCATGGTGGGCGTGGAGGAGTGTGGGAAGGA
TGGTACATGTGCATGTGGGTTTTGGCGGAAACTCTCCCTGCTCGGCCGAG
AATACTGCCCTCGTGGATCGCTACGGCACATGCTTCAAAGCGAAGGTAGG
CGCTGTGGTGCAAGAAATCGGCCTTACACGGTCCCTCTCCCACGTGCACA
TCGTCCGCTACTTGGGAACCCACCAATGCGGGAGCTGCTTGAACATCTTT
TTGGGTGCTAGTCAACAAACGGGTAGACCGAGAGATGGCAGGTGCGCATG
GCTCCGTGTATCTGGGCCGGCTGACGAAATCAGGAGAGCTGGTCGCGGTC
AAACAGATGTCCGAGACCAGAATGCTTGTTCATCGGCATCCATTTTTCAC
GAATTCTTCACGTCAACCTCACAGGAGAGGTGCCTGCACACTGTCCACAC
TCTCTGTCGCCCTTGTCAGCCATGGTGGGCGTGGAGGAGTGTGGGAAGGA
TGGTACATGTGCATGTGGGTTTTGGCGGAAACTCTCCCTGCTCGGCCGAG

Synonyms

Publications