EWM24495.1, cds6178 (CDS) Nannochloropsis gaditana

Overview
NameEWM24495.1
Unique Namecds6178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:813073..813266 -
Alignment locationCM002467.1:812917..812981 -
Alignment locationCM002467.1:812746..812782 -
Alignment locationCM002467.1:812516..812620 -
Alignment locationCM002467.1:812269..812317 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24495.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100883g1.3081.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:813073..813266 -
CM002467.1supercontigCM002467.1:812917..812981 -
CM002467.1supercontigCM002467.1:812746..812782 -
CM002467.1supercontigCM002467.1:812516..812620 -
CM002467.1supercontigCM002467.1:812269..812317 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24495.1 vs. NCBI_GenBank
Match: gi|585105978|gb|EWM24495.1| (hypothetical protein Naga_100883g1 [Nannochloropsis gaditana])

HSP 1 Score: 301.212 bits (770), Expect = 1.600e-103
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MSETRMLVHRHPFFTNSSRQPHRRGACTLSTLSVALVSHGGRGGVWEGWYMCMWVLAETLPARPRCAWLRVSGPADEIRRAGRGQTGASQQTGRPRDGRRCGARNRPYTVPLPRAHRPLLGNPPMRELLEHLFGILPSWIATAHASKRR 149
            MSETRMLVHRHPFFTNSSRQPHRRGACTLSTLSVALVSHGGRGGVWEGWYMCMWVLAETLPARPRCAWLRVSGPADEIRRAGRGQTGASQQTGRPRDGRRCGARNRPYTVPLPRAHRPLLGNPPMRELLEHLFGILPSWIATAHASKRR
Sbjct:    1 MSETRMLVHRHPFFTNSSRQPHRRGACTLSTLSVALVSHGGRGGVWEGWYMCMWVLAETLPARPRCAWLRVSGPADEIRRAGRGQTGASQQTGRPRDGRRCGARNRPYTVPLPRAHRPLLGNPPMRELLEHLFGILPSWIATAHASKRR 149
The following BLAST results are available for this feature:
BLAST of EWM24495.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105978|gb|EWM24495.1|1.600e-103100.00hypothetical protein Naga_100883g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6193rna6193Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications