rna6190, rna6190 (mRNA) Nannochloropsis gaditana

Overview
Namerna6190
Unique Namerna6190
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length228
Alignment locationCM002467.1:805093..805840 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102571g1.5679.mrna
Orig protein idgnl|cribi|Naga_102571g1.5679
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:805093..805840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102571g1gene5980Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24498.1cds6175Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6190rna6190-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6190 ID=rna6190|Name=rna6190|organism=Nannochloropsis gaditana|type=mRNA|length=228bp
ATGATGCGGAGCTTCCTGAAGTCATGCTCGCGGTTGCTCGCTTTAACTAC
ATCGATGTTACCAGGGCCTATGATTTATCGTTTTCTTTGGGAAAGATTTC
GCCGGACGCGTGCGAGAAGAGGAGCCGTTGGGGACTCGGTGCCCCCTGCC
CGGGACGACGGATCACGATGCATGAGGCTTGGCCGAGGACTATCAGACAC
GATACACCATCAACTTTGGAGTAGTTGA
back to top

protein sequence of rna6190

>rna6190-protein ID=rna6190-protein|Name=rna6190|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MLRPHPPHSFSYVSLPPPCHLPFPLFPPSLPPSLPPSLPPSLPTQAAQSL
RDLPSAPPAVKLLEEYFRIAPNNPEFRGRFKAMAQVCHCPPLLPLMFSLA
SSFPCLGSVCLKGSDQR
back to top

mRNA from alignment at CM002467.1:805093..805840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6190 ID=rna6190|Name=rna6190|organism=Nannochloropsis gaditana|type=mRNA|length=748bp|location=Sequence derived from alignment at CM002467.1:805093..805840- (Nannochloropsis gaditana)
CCCTCCCCCGGCCTCCTCGTCGGTCCCTGCCATCTTCATTGTCAATTGCC
AACTCCCCTCCGAGGCCCCCGTCCTTTTGGGCGCTAGCGACGACGGGCCC
GGCTATAACGTCATCTTTTACTTCGTCTGCACGGAGGAGGTAGGGCGGGA
GGGCGGGAGGAAGGGAAGGAGGGAGGGAGGCCTTCTGTCGCATCGACGGC
GATGAGCGCCAAGAGAGACAGACTCAATTCCCCCCCGCATTCCGCCACCT
CCCCTTTTTGCATTCTACCTCCCTTCATTGCCCACATCACATCCTTGCAA
CATGCTTCGTCCCCACCCTCCTCATAGCTTTTCCTATGTTTCCCTCCCAC
CACCGTGTCATTTGCCCTTCCCTCTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCGACACAGGCCGCCCAGAGCCT
CCGCGACCTTCCGTCGGCACCTCCGGCCGTTAAGCTCCTGGAGGAGTATT
TCCGAATTGCCCCGAATAACCCCGAGTTCCGAGGAAGGTTCAAGGCCATG
GCGCAGGTGTGCCACTGCCCCCCCCTACTCCCTCTCATGTTTTCTCTTGC
TTCTTCCTTTCCCTGCCTAGGAAGTGTTTGTTTGAAAGGGAGTGATCAGA
GGTGACCTTCACGAACCCTGTGCGCTCCAAAGCAGTATACGACATGCTTG
AACTATACGGGCAACCTCCTCTCTCCTCTTGCGCGTCGATCTCCTGCT
back to top

Coding sequence (CDS) from alignment at CM002467.1:805093..805840-

>rna6190 ID=rna6190|Name=rna6190|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at CM002467.1:805093..805840- (Nannochloropsis gaditana)
ATGCTTCGTCCCCACCCTCCTCATAGCTTTTCCTATGTTTCCCTCCCACC
ACCGTGTCATTTGCCCTTCCCTCTCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCGACACAGGCCGCCCAGAGCCTC
CGCGACCTTCCGTCGGCACCTCCGGCCGTTAAGCTCCTGGAGGAGTATTT
CCGAATTGCCCCGAATAACCCCGAGTTCCGAGGAAGGTTCAAGGCCATGG
CGCAGGTGTGCCACTGCCCCCCCCTACTCCCTCTCATGTTTTCTCTTGCT
TCTTCCTTTCCCTGCCTAGGAAGTGTTTGTTTGAAAGGGAGTGATCAGAG
GTGA
back to top
Synonyms
Publications