rna6187, rna6187 (mRNA) Nannochloropsis gaditana

Overview
Namerna6187
Unique Namerna6187
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1122
Alignment locationCM002467.1:799637..800906 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101196g3.4672.mrna
Orig protein idgnl|cribi|Naga_101196g3.4672
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:799637..800906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101196g3gene5977Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6187rna6187-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24502.1cds6172Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6187 ID=rna6187|Name=rna6187|organism=Nannochloropsis gaditana|type=mRNA|length=1122bp
ATGGAGGGTACGGGCTCAGCTCCCTGCAATACAACAGACATTGCTTCTAC
AGCAAAGTCCGCAATTAAGGGCGCGAGGATAGCTGGCGTCAAAACTATAC
GGGATGCTGATACTCCACCAGAAAACAAAGCGCCTGCTGCTTTTGAGGCG
ACGATTCTTCGCATAACCTCCGACTTAGCCTTGATTGGCAAAAATTCCCG
TAAAGGCAGCACATCAAACGAGACAGATGGCGCTGACTTCGACCAGGGAG
AAAATTCGGAAAACGAAGACTCTGGAGCAGCGGAGGGAGTGGAGGACGCC
GTCGGCACGGAGTTGCAGAAGATTGTCCCGACCGGGAAGGAGAGTCCGCC
CTCTCTCCTCTCTATCATCGACGACTTGCACAGTTGCTTGGGAATCCACT
ATCCTCCACGTCCTTCCTCCTCCTCCTCCTCCCCTCCTCAATCCACGCCT
GTCCTCAAAAAGTTTCAGGTCTCGCCCGGGGCCTATGCAATATACACCTC
CCTCACGCAGGTCGCCCTCCTCGCCGCTGATGGCCACGCTGGCGCCTTTC
CTCCTCCCTCCAAGCGCGTTCAACCATGCCCGTCTGACCCGTCCTCCTGC
CTGCGCCACGCGGCCCGTCTGCTTCACCGAGCTGTCCGTGCCGATCTTTC
CAGCTTTCTCTCCTTTTTAAAGGGCAAGCAGGCGGAAGCCCTGAGGAAGC
AGGCCCAACGCCTTGCCGACCTCCACGCCTGGTACCTGAAGGGCCCCACC
CTTCCCCCCGCCCTCCCTCCCACCCTCACGCCGTCCCACTCGACGCTCCT
GGAGGCCACCTGCGTGGAGTGCTTCGACAGGCTCTGCCCCCCCCCGGACC
TGGCGGAGGAGGTGGAGGCCGTGCGGGACAGGCTGGAGGGGGTCCTGCGA
GAGCATCCAGCATTCCGATCCGCTCGTGTCCTGGTCTTCGGCTCAGCCCC
TTGTGGCCTGGGCTCCTCGGGCAGTGACATCGACCTGTCAAGAGGAACAC
TTTCGCAAAAGGTGGCAGCGGCAAGTCGAGCTGCGGGGCCGGGGGCTCTC
CCGATGGACGATGGCGAACAAGCTCTGCAAGAGCCTGGAACAACAGTTGA
ACGCCCTCGAGAAAAAGCGTGA
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protein sequence of rna6187

>rna6187-protein ID=rna6187-protein|Name=rna6187|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MPVARSPISSPVTFSSLPPSLPPSLPTPLHPPSFSYESFTHVRGVLWRWD
HWLGDVPVSVRYAPYTPAKHKAFRFLTDAVAGIEFKTTIVTVSNAKRLLQ
ALLMVLGVIYLVQLSKECASADLMGMLPYQRA
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mRNA from alignment at CM002467.1:799637..800906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6187 ID=rna6187|Name=rna6187|organism=Nannochloropsis gaditana|type=mRNA|length=1270bp|location=Sequence derived from alignment at CM002467.1:799637..800906- (Nannochloropsis gaditana)
CCACCCCTTACCCTCTCATTTCATGCCAGTGGCTCGAAGCCCCATTTCGA
GCCCTGTAACCTTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
ACCCCCCTCCATCCACCCAGCTTTTCCTACGAAAGCTTCACGCACGTCCG
GGGGGTCTTGTGGCGCTGGGACCATTGGCTGGGGGATGTGCCAGTCTCAG
TGAGGTATGCGCCGTACACGCCTGCCAAGCACAAGGTAGGAAGGGAAAGA
GGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGACAATGCCGTGGCCC
CCATCCTCGTCCTCGTCGTGCCCACGTGTTCTCCCTCTCCCTGCGCCCCT
CCCTCGCCCTTGTTCGTGACACACACAGGCCTTCCGGTTCCTCACGGACG
CGGTGGCCGGCATCGAATTCAAGACCACCATCGTCACAGTGTCGAACGCC
AAGCGCCTGCTGCAGGCGCTCTTGATGGTCCTGGGAGTCATTTACTTGGT
GCAGCTAAGCAAGGTAAAAAGGCGCGATTCAGGCCTTTGAGGGAGAAAGG
GTAGTGTGATGGATGAATTGGGTATGTGGAAACGGGGATATGCGGGCTTT
GGACCTCGCGTGAGCCCTATTGGACCCTGCAAATGTCTCGGAGGAGACGA
AGCGGGTCTTTGTCCGGTCCTTTTGGATTGATTTACCAACACATGCACTA
CCGTGGACAGATCGGGCGTGCCCGCTTGTCCTCTCATTGCATACGCGTAC
ATTCATTACACGGGAGAAGGACGTCTTCCATACTCTGGGCATAACAAATC
GAATTTTAACCCTATCTGTACAGGAATGTGCTAGCGCGGACTTGATGGGG
ATGTTACCTTACCAACGAGCATGATGTGGTCCTGGATACCTTTGATCTGG
GTGGTGTGGGAATCAGATACAATGTGACACCAGAAGCGACTAGATAATGA
GAAACAGTGCCGATGACGAACTTGTGGCAGATATGTAGGAAAAGATTACT
CGCGACTGAGGGTGAGGGCATGAGGCAAACAATGCGAATAGAAACAAAGC
CGAACATATATAAATGGGAGGTGCGTTTTGGATTAAAAATACCAAGTCTG
GTTATTTCTCTGCAAGAATTCTTTCGAGCCAGGTTTCCTTGCCAGGTCAT
CAGTGAGCTTGTTTTTTGCCTCAAGCCTCTCATCATATATAGCGCGAATT
TGTGACGCATTGGCATGAGTCCACCACTTAGAGCCTTGCTAAATCATCAA
TTTTATGAAAGTACTTCAGT
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Coding sequence (CDS) from alignment at CM002467.1:799637..800906-

>rna6187 ID=rna6187|Name=rna6187|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002467.1:799637..800906- (Nannochloropsis gaditana)
GAATGTGCTAGCGCGGACTTGATGGGGATGTTACCTTACCAACGAGCATG
AGCCTTCCGGTTCCTCACGGACGCGGTGGCCGGCATCGAATTCAAGACCA
CCATCGTCACAGTGTCGAACGCCAAGCGCCTGCTGCAGGCGCTCTTGATG
GTCCTGGGAGTCATTTACTTGGTGCAGCTAAGCAAGATGCCAGTGGCTCG
AAGCCCCATTTCGAGCCCTGTAACCTTTTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTACCCCCCTCCATCCACCCAGCTTTTCCTACGAAAGC
TTCACGCACGTCCGGGGGGTCTTGTGGCGCTGGGACCATTGGCTGGGGGA
TGTGCCAGTCTCAGTGAGGTATGCGCCGTACACGCCTGCCAAGCACAAGG
AATGTGCTAGCGCGGACTTGATGGGGATGTTACCTTACCAACGAGCATGA
GCCTTCCGGTTCCTCACGGACGCGGTGGCCGGCATCGAATTCAAGACCAC
CATCGTCACAGTGTCGAACGCCAAGCGCCTGCTGCAGGCGCTCTTGATGG
TCCTGGGAGTCATTTACTTGGTGCAGCTAAGCAAGATGCCAGTGGCTCGA
AGCCCCATTTCGAGCCCTGTAACCTTTTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTACCCCCCTCCATCCACCCAGCTTTTCCTACGAAAGCT
TCACGCACGTCCGGGGGGTCTTGTGGCGCTGGGACCATTGGCTGGGGGAT
GTGCCAGTCTCAGTGAGGTATGCGCCGTACACGCCTGCCAAGCACAAGGA
ATGTGCTAGCGCGGACTTGATGGGGATGTTACCTTACCAACGAGCATGAG
CCTTCCGGTTCCTCACGGACGCGGTGGCCGGCATCGAATTCAAGACCACC
ATCGTCACAGTGTCGAACGCCAAGCGCCTGCTGCAGGCGCTCTTGATGGT
CCTGGGAGTCATTTACTTGGTGCAGCTAAGCAAGATGCCAGTGGCTCGAA
GCCCCATTTCGAGCCCTGTAACCTTTTCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTACCCCCCTCCATCCACCCAGCTTTTCCTACGAAAGCTT
CACGCACGTCCGGGGGGTCTTGTGGCGCTGGGACCATTGGCTGGGGGATG
TGCCAGTCTCAGTGAGGTATGCGCCGTACACGCCTGCCAAGCACAAG
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Synonyms
Publications