EWM24502.1, cds6172 (CDS) Nannochloropsis gaditana

Overview
NameEWM24502.1
Unique Namecds6172
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:800672..800884 -
Alignment locationCM002467.1:800394..800528 -
Alignment locationCM002467.1:800033..800083 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24502.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101196g3.4672.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:800672..800884 -
CM002467.1supercontigCM002467.1:800394..800528 -
CM002467.1supercontigCM002467.1:800033..800083 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24502.1 vs. NCBI_GenBank
Match: gi|585105996|gb|EWM24502.1| (hypothetical protein Naga_101196g3 [Nannochloropsis gaditana])

HSP 1 Score: 267.7 bits (683), Expect = 8.044e-91
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    1 MPVARSPISSPVTFSSLPPSLPPSLPTPLHPPSFSYESFTHVRGVLWRWDHWLGDVPVSVRYAPYTPAKHKAFRFLTDAVAGIEFKTTIVTVSNAKRLLQALLMVLGVIYLVQLSKECASADLMGMLPYQRA 132
            MPVARSPISSPVTFSSLPPSLPPSLPTPLHPPSFSYESFTHVRGVLWRWDHWLGDVPVSVRYAPYTPAKHKAFRFLTDAVAGIEFKTTIVTVSNAKRLLQALLMVLGVIYLVQLSKECASADLMGMLPYQRA
Sbjct:    1 MPVARSPISSPVTFSSLPPSLPPSLPTPLHPPSFSYESFTHVRGVLWRWDHWLGDVPVSVRYAPYTPAKHKAFRFLTDAVAGIEFKTTIVTVSNAKRLLQALLMVLGVIYLVQLSKECASADLMGMLPYQRA 132
The following BLAST results are available for this feature:
BLAST of EWM24502.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105996|gb|EWM24502.1|8.044e-91100.00hypothetical protein Naga_101196g3 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6187rna6187Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications