rna6185, rna6185 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6185
Unique Name	rna6185
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2623
Alignment location	CM002467.1:795947..797602 -

Link to JBrowse

Properties


Property Name	Value
Product	PAP/25A-associated
Orig transcript id	gnl\|cribi\|Naga_100796g1.8936.mrna
Orig protein id	gnl\|cribi\|Naga_100796g1.8936
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:795947..797602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100796g1	gene5975	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6185	rna6185-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24503.1	cds6170	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:795947..797602-
coding sequence from alignment at CM002467.1:795947..797602-

mRNA sequence

>rna6185 ID=rna6185|Name=rna6185|organism=Nannochloropsis gaditana|type=mRNA|length=2623bp
CGTGTTTTCAGGGAATTTTTTTAATCATCTCTGTGATGAATTTTTTCCCA
TGATTATGATTTGAGACAACGATGCATGCGAAAATATTTGCATTACTTTC
TTTTTTCATACGTGTCTTTCCTTAGGTTGTTATCGAGAATTCTGAGCTAA
GCACGAGCTCACGTTCTCAAGCGTCTTGACATGTTTTATGCCTCTCCCTC
TGACCTTTCTGCGTGCAGGGAATAGTGTCATTGGATTTCAAACATAAAAT
CGAGGCAATTTAATGTTTTACAAGGCTGCTTGAGGAGCTGACATAGTGGA
CAGTACATTGCTGCGGTGATAGCTTTTCCTCAGCTTTTCTCGTGTTCTCG
ATCTCTGCCGGATCTCCGCTCATTTTTTCTTAAGCCCTTTATTGGAGAGC
ATCATCAAACTGTTGGATGCCGGGAAAAGGTCAATGCAACATGCTTCAAA
GGCCGACTTCCCAGCAAACAGTGAAAAGATTCAGTGGAATGAACGACGGC
GCCTGGCTGCCGCCCGGAGGTTAGCAGCTTCCTACTCGTCTTCCTCCTTG
CGGCCTGTGTCCCCCAAGGATAATAATGCAACAACACTCACAGCAGCCTG
GCTCCGAAAACATTACAAGTGTGCCTCTGTCCCCATGTGGACGGAGGACA
CTGACGAGCATGAGGATACCCTTCGAAATGTAACACACTTAAGCCTTACC
AGAAGCACAGACACCCCAGACATTACGAATCTTGAAACCCTTGGCGAGCT
TCTACCGTCTTTGGAATCCTTTTCTCTTACACACAGTTGCCTTTCCTCTC
TTCGTGACTTGGGCTCCCGCCTTGGTCATCTTCGTGTCCTTGATCTGACT
GCTTGCAATCTACAATGCCTGGATGGCATGGCGGCTTTTCCTCTCCTGGA
GGAAGTCTATCTCTCACACAACCTTCTGCGCGACTTAACCCCACTGTTTC
TCCACGACCATCTCACAATTCTTGATATCAGTCATAATTTGTACCTTCGT
CTCCCTTCGTCTATGGCCCCACTGCATGTCTTGGCTTCTTGTAAGAATAT
GCATACGTTATCGATGAAAGAGACTCCTGTGGAAAGGGCGTTGCAAAATC
TTGCGATAGGAAGTAAGATAGATAGCTCTTACCGAAAAATTGTCGGGTCA
CTTATTCCGCAATTACATGTCTTGGATGGAAAAAAGCTGCCAAAGAGCGA
GAAAGATGGAGAAGAACAAGATATTGATGAGGCAGCTTGGCGCAATGTTG
TGTTGCTCTTACAGAAAATGGAAGACGAGGAGAGGGATGAAGAGAAGACA
GAAAGATGGGAAAATAGAAAAGCTGATAGAGTTTCAAAACGCATTACTGA
CTGATGACAGATGACCGGGAAGGAAAGCAACAAAACGAGAGGAAAGTGCA
TATTGACACGTAGGAAAGCGGAGGTCTCAGATGCGGAAGCTAGAAGCAAT
AGGGTACTTCGAAAATACAGAGCGATCCGCCTACTTATGTTGAGACATTA
ATTTTTCGGTCTGCGTAAGCGTACATCAACATTTCTTGATTTGTCATCTT
TTAAGCTCCTCATTGTTCTTAATTGTGAAAGCCTTCCTTTCTACATATTT
CCGAGGCATGATGGTATCTGAAGCTGTACGCGTATGTAAAGCAAGCAGCT
CAAGGTTACGCTCTTTTATTTATTTCATTCATGTTTCACTTGAAGAAGTA
CAAGTACCTTTCCAGATTGCGTGAGTGCGGGGTAAGCTCCCGTACTGCAG
TAAAGGTTTTTGGCAAGCCAATAGACTATATCGCATCGTATTTGTCGCCT
CAGCTGCTGCCTGGTAACGGCCAAGATTTAAATTTTGTCCTTGTCCACCA
CTGACCTCAAGCACACTTGTTTGGGATGTTAAAATGCGCATTATCATTCA
CACTTTCTTCTGGTCAATTTGAAGCATACCCTTTCCTTTTCGCTGTCACG
GGATTAGCCCATTAGTCTCATAGGGGAGGTTGCAAGAAGCACACAATAAC
TGATTCTCTGCTCTTCAACACTTCAGATGCGGTATGTATAAAGCGTGTCT
TTGCTCATGAAGGCACTATGGCGGACGCAGATGCTGTCGATTCGGCCACT
TTCAGCGGCTGGGAGGCGGTCAAGACTAGAGTGGTCGCCACTTTCCTTCT
CGATATCCTCTACAGCCTCAGCCGAGGGGGACGGTAAAGAAAGTATTTGC
CCCGAATGCGGAGCTTCCTTCAAGTGTGGCTGCACTAAGGGGGACTGTAC
AGCATGTTGGTGCGCGTCCTTGCCCTTGGCACTTCCTCTCCCTCCAGTCC
GTTCTCCTAACTCATCCCACGCCCCGGCAGACGAGCCTGTGTCTGGTTGT
TTGTGTCCATGTTGTCTACGCGCTAAAATTGCGGACAGGAATGCGTGTAA
TTTGAAAAAGGCGGATCCTTAAGGGCAAATAAGGTGGATTGTGGAATTTG
ATAGCATGTCTTTCGGCATGCTCCCACACTTTGCCTCCATGACAACGATT
AGCCCGGGCCCGCAAAAACAAATGGAAAGTGAAAGCCACAGAATGCTCGG
AAGCGCACTTGCAATCTCCGCCATTCATCTCGCCCTGCATCATTTCTTGT
ATCTCGGAGAAAGAATGCTTTCA

protein sequence of rna6185

>rna6185-protein ID=rna6185-protein|Name=rna6185|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQ
GKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEM
DNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDL
CINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSS
YALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAA
NAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVP
AEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMML
DGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD

mRNA from alignment at CM002467.1:795947..797602-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6185 ID=rna6185|Name=rna6185|organism=Nannochloropsis gaditana|type=mRNA|length=1656bp|location=Sequence derived from alignment at CM002467.1:795947..797602- (Nannochloropsis gaditana)
TACCCGCTCCCCCTCCCTGCCCCCTGACCTCGAGATGCAGCGAATGGATG
CGGAAAGGGCGCTGCGTAGGGCCAGAACCAATGCAGAAATTTTAGAAAAG
GAATTCAAGCTGTTGAAAAGCCGGGCAGAAACGGCTCGCCCGGCGTTTCA
AGCAACGGTCGGACGGCTTGAAGCACTGCGACAGGGAAAGGATGCCAAGA
GAGTGCGGGAAGTCGAGCAAGTCGTGGCCGCCGTCCGCGCCGCCGACAAA
GCCCTGGAAGAATCGAAGCGCCTCGTCTTCCGTGTCCGACGTTGCCTGGA
GAAGACCGGCGGAGGGCACAGAGGGCAGGAAATGGACAACGGAAAAGAGA
GAGCGCGGTACCAGATACTCCGAACGCTGCACACTGTGCGGGTCCCGATC
GTCACATTCAAGGACATGGGCGACAAACGGAAGCAGGCAGGGAAGGCGGG
AAAGGAAGGAGGGGGCGCGTGGCAATGCGACTTGTGCATCAACAACATCG
GCGCGGTTTACAATACAGGTGAATGGGGGGAAGGAAGGGACTGGGGGAGG
GAAAGAGGGAGAGAGGGCAGGCCCAAGGGAGGGATACAAATTTCTGATGC
GTGTGTATGGACGTCGTGACAGGAGGGAAGGGCGGAAGCAAACAGAGAGA
AGGGAGGGAGATAGGATCATGCCCAAGACCCTGCCTGCGAGTCCCTCCCT
CCCACCCACCCCTTCCCCTCCCTCCCCCCCGCCCTCCTCCCAGCCCTCCT
CTACTCCTATCTCCAGTGCGATGACCGTGTGCGGCCCCTGATCCTTCTCG
TCAAGGCATGGACCCGCGTCCACCAATGCAATGGGGCCGCTCAAGGCTTC
TTCTCCTCCTATGCCCTCTCCCTCCTCTGTATCCACTATTTGCAGCAGCT
CCGCCTCCTCCCTGTCCTTCAACACCCCTCCCTCCTTCCACCCCACCCAC
GCGACCGCGAGTACTGCTTCGGTTGCGACGTGTCCTACTGTGCGGATATA
ACCGCTGCCAACGCTGCTTTCTCCCCCGTCCTTCCTTCCTCTTTCCCTCT
GAGCACCCTCGTGCGGGGCTTTTTTCATTATTACGGGTACCAGTTCAACC
CGGTCCGCACCGTCGTTTCGATCCGCCAAAGGATGCTCATGGACAAGGGA
GATGTGCCGGCGGAGGGAGGGCCGTCGGGGGGGGGAAGAAGGAAGACGTT
TAAGGTATTGTGGCGGATGGCGGTGGAGGACCCCTTTGAATGCTGTGGGA
GCGCGAAAGAACACGATTTGGGGGATGTTTTGAAGGTGGACAAGCAAAAG
ATGATGCTGGATGGATTTAGAAAAGCGTACAAAGAGCTCTCCCGGGTAGG
GACAGGGGAAAGAATGGAGGACAAGAAGAGATGGAAAGCCTTGTTTTTAG
GGAAAAAAGAGGCTGGGGCAGCGAAAGGAATGAGGGATTAGGACGCAAAG
GAAGAGGTGCGATGGGAAGGGAACAAGGTGAGGAGGAGGGAAGTAAAGGG
CGAGATATGAGGGAGGAAGGCGAGTAAGAATGAGAGCGGGCTGATGGGCA
GTGACTGAATAACAGGTATGTTGATAGCATGTGCCAGAGGGCGCCGGTAT
GAAGACATGAAAGCATTCTTTCTCCGAGATACAAGAAATGATGCAGGGCG
AGATGA

Coding sequence (CDS) from alignment at CM002467.1:795947..797602-

>rna6185 ID=rna6185|Name=rna6185|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at CM002467.1:795947..797602- (Nannochloropsis gaditana)
CCCTCCTCTACTCCTATCTCCAGTGCGATGACCGTGTGCGGCCCCTGATC
CTTCTCGTCAAGGCATGGACCCGCGTCCACCAATGCAATGGGGCCGCTCA
AGGCTTCTTCTCCTCCTATGCCCTCTCCCTCCTCTGTATCCACTATTTGC
AGCAGCTCCGCCTCCTCCCTGTCCTTCAACACCCCTCCCTCCTTCCACCC
CACCCACGCGACCGCGAGTACTGCTTCGGTTGCGACGTGTCCTACTGTGC
GGATATAACCGCTGCCAACGCTGCTTTCTCCCCCGTCCTTCCTTCCTCTT
TCCCTCTGAGCACCCTCGTGCGGGGCTTTTTTCATTATTACGGGTACCAG
TTCAACCCGGTCCGCACCGTCGTTTCGATCCGCCAAAGGATGCTCATGGA
CAAGGGAGATGTGCCGGCGGAGGGAGGGCCGTCGGGGGGGGGAAGAAGGA
AGACGTTTAAGGTATTGTGGCGGATGGCGGTGGAGGACCCCTTTGAATGC
TGTGGGAGCGCGAAAGAACACGATTTGGGGGATGTTTTGAAGGTGGACAA
GCAAAAGATGATGCTGGATGGATTTAGAAAAGCGTACAAAGAGCTCTCCC
GGGTAGGGACAGGGGAAAGAATGGAGGACAAGAAGAGATGGAAAGCCTTG
TTTTTAGGGAAAAAAGAGGCTGGGGCAGCGAAAGGAATGAGGGATTAGAT
GCAGCGAATGGATGCGGAAAGGGCGCTGCGTAGGGCCAGAACCAATGCAG
AAATTTTAGAAAAGGAATTCAAGCTGTTGAAAAGCCGGGCAGAAACGGCT
CGCCCGGCGTTTCAAGCAACGGTCGGACGGCTTGAAGCACTGCGACAGGG
AAAGGATGCCAAGAGAGTGCGGGAAGTCGAGCAAGTCGTGGCCGCCGTCC
GCGCCGCCGACAAAGCCCTGGAAGAATCGAAGCGCCTCGTCTTCCGTGTC
CGACGTTGCCTGGAGAAGACCGGCGGAGGGCACAGAGGGCAGGAAATGGA
CAACGGAAAAGAGAGAGCGCGGTACCAGATACTCCGAACGCTGCACACTG
TGCGGGTCCCGATCGTCACATTCAAGGACATGGGCGACAAACGGAAGCAG
GCAGGGAAGGCGGGAAAGGAAGGAGGGGGCGCGTGGCAATGCGACTTGTG
CATCAACAACATCGGCGCGGTTTACAATACAGCCCTCCTCTACTCCTATC
TCCAGTGCGATGACCGTGTGCGGCCCCTGATCCTTCTCGTCAAGGCATGG
ACCCGCGTCCACCAATGCAATGGGGCCGCTCAAGGCTTCTTCTCCTCCTA
TGCCCTCTCCCTCCTCTGTATCCACTATTTGCAGCAGCTCCGCCTCCTCC
CTGTCCTTCAACACCCCTCCCTCCTTCCACCCCACCCACGCGACCGCGAG
TACTGCTTCGGTTGCGACGTGTCCTACTGTGCGGATATAACCGCTGCCAA
CGCTGCTTTCTCCCCCGTCCTTCCTTCCTCTTTCCCTCTGAGCACCCTCG
TGCGGGGCTTTTTTCATTATTACGGGTACCAGTTCAACCCGGTCCGCACC
GTCGTTTCGATCCGCCAAAGGATGCTCATGGACAAGGGAGATGTGCCGGC
GGAGGGAGGGCCGTCGGGGGGGGGAAGAAGGAAGACGTTTAAGGTATTGT
GGCGGATGGCGGTGGAGGACCCCTTTGAATGCTGTGGGAGCGCGAAAGAA
CACGATTTGGGGGATGTTTTGAAGGTGGACAAGCAAAAGATGATGCTGGA
TGGATTTAGAAAAGCGTACAAAGAGCTCTCCCGGGTAGGGACAGGGGAAA
GAATGGAGGACAAGAAGAGATGGAAAGCCTTGTTTTTAGGGAAAAAAGAG
GCTGGGGCAGCGAAAGGAATGAGGGATTAGATGCAGCGAATGGATGCGGA
AAGGGCGCTGCGTAGGGCCAGAACCAATGCAGAAATTTTAGAAAAGGAAT
TCAAGCTGTTGAAAAGCCGGGCAGAAACGGCTCGCCCGGCGTTTCAAGCA
ACGGTCGGACGGCTTGAAGCACTGCGACAGGGAAAGGATGCCAAGAGAGT
GCGGGAAGTCGAGCAAGTCGTGGCCGCCGTCCGCGCCGCCGACAAAGCCC
TGGAAGAATCGAAGCGCCTCGTCTTCCGTGTCCGACGTTGCCTGGAGAAG
ACCGGCGGAGGGCACAGAGGGCAGGAAATGGACAACGGAAAAGAGAGAGC
GCGGTACCAGATACTCCGAACGCTGCACACTGTGCGGGTCCCGATCGTCA
CATTCAAGGACATGGGCGACAAACGGAAGCAGGCAGGGAAGGCGGGAAAG
GAAGGAGGGGGCGCGTGGCAATGCGACTTGTGCATCAACAACATCGGCGC
GGTTTACAATACAG

Synonyms

Publications