EWM24503.1, cds6170 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|585105998|gb|EWM24503.1| (PAP/25A-associated [Nannochloropsis gaditana]) HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0 Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query: 1 MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD 393
MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD
Sbjct: 1 MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD 393
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|301114445|ref|XP_002998992.1| (Poly(A) polymerase, putative [Phytophthora infestans T30-4] >gi|262111086|gb|EEY69138.1| Poly(A) polymerase, putative [Phytophthora infestans T30-4]) HSP 1 Score: 140.584 bits (353), Expect = 1.141e-32 Identity = 91/270 (33.70%), Postives = 135/270 (50.00%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPA-EGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDK 372
A+ ++ + RVPI+ F G ++CDLC +N+ A +NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I+YLQ +R+LP LQ P LL ++ ++++C D A A L S L+TL+ GFF YY QF+ VV++R + PA + G G + KT WRM+++DP E DLG VL+ Q+ ++ R+A++ L+R GE D+
Sbjct: 515 AKCEVRHVIAGARVPIIRF------------LHTRSGRDYECDLCFDNVLATWNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIYYLQVVRVLPNLQAPGLLQSAQIQPQFYNDINIAFCEDRAVAQAFLERSLEGNSSDMSLATLLVGFFAYYATQFDFAERVVTVR------SPETPALKLGQWGSRKAKT----WRMSIQDPLETG-----RDLGCVLQFKGQERIIHELRRAHELLAR---GESFSDE 754
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|695464394|ref|XP_009538938.1| (hypothetical protein PHYSODRAFT_533748 [Phytophthora sojae] >gi|348665578|gb|EGZ05407.1| hypothetical protein PHYSODRAFT_533748 [Phytophthora sojae]) HSP 1 Score: 138.658 bits (348), Expect = 5.133e-32 Identity = 89/268 (33.21%), Postives = 134/268 (50.00%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSP---VLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMED 371
A+ ++ + RVPI+ F ++G+E ++CDLC N+ A NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I+YLQ + +LP LQ P LL +Y ++++C D A A P V S L+TL+ GFF +Y QF+ + V+++R + PA G R+ WRM+++DP E DLG VL+ Q+ ++ R+A++ L+R GE D
Sbjct: 542 AKCEVRHVIAGARVPIIRFLHT--------RSGRE----YECDLCFENVLATRNTPLLRAYASFDDRARALGLAVKHWAKQRSISDASMGFLSSYSFVLLSIYYLQVVHVLPNLQDPRLLETAQIRPDYYNDINIAFCEDRGIARAFHQPTSGVDASGLSLTTLLAGFFEFYATQFDFAKRVITVR------SPEKPALKVAQWGTRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQEKIIRELRRAHEMLAR---GESFSD 780
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|698825289|ref|XP_009845673.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574099226|gb|ETV64855.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 135.191 bits (339), Expect = 7.803e-31 Identity = 94/257 (36.58%), Postives = 128/257 (49.81%), Query Frame = 0
Query: 105 ERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELS 361
++A ++ + RVPI+ F + +CD+C+ N A NT LL +Y D RV PL+L VK W ++ N A+Q SSY+ ++L IH+LQ LR+LP LQHPSLL P R+ G DV++C D A A F PV + L+ FF Y F + VVSIR M K + GG KT WRM++EDPFE DLG VL+ Q +L FR+A + L+
Sbjct: 403 QKAGCKVNNVIAHARVPIIKFLHVDSN--------------LECDICMENTLATKNTLLLRTYALFDSRVSPLVLAVKRWAKMRGVNDASQNTLSSYSYAILVIHFLQILRILPNLQHPSLLLNSP--RQTLNGHDVTFCTDFIACRAFF-PVANVDLSVGDLIVRFFDYVA-TFPWLTKVVSIRIND-MTKSE-------RWGGAAKT----WRMSIEDPFEST-----RDLGIVLQPLGQDKVLAEFRRAKQVLA 624
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|953503548|emb|CEG35558.1| (S-M checkpoint control protein CID1 and related nucleotidyltransferases [Plasmopara halstedii]) HSP 1 Score: 135.191 bits (339), Expect = 7.869e-31 Identity = 86/259 (33.20%), Postives = 131/259 (50.58%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
A+ ++ + RVPI+ F + +R G + CDLC N+ A NT LL +Y D+R R L L+VK W + + A+ GF SSY+ LLCI+YLQ + +LP LQ P LL E ++++C D + A L +S L+TL+ GFF +Y +F+ R VV+IR ++ + G + KT WRM+++DP E DLG VL+ Q+ ++ FR+A++ L R
Sbjct: 523 AKCKVRHVITGARVPIIRF--LHTRR----------GQEYDCDLCFENVLATRNTPLLRAYAAFDERARNLGLVVKHWAKQRGISDASSGFLSSYSYVLLCIYYLQIVHVLPNLQDPQLLKSANIPPELYNDVNIAFCEDRSVAQTFHKRTLETNSTSMALTTLLAGFFEFYATRFDFARRVVTIRSPEIL-----ALKLAQWGSRKSKT----WRMSIQDPLETG-----RDLGCVLQFKGQEKIIREFRRAHEMLER 755
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|698825291|ref|XP_009845674.1| (hypothetical protein H257_18334 [Aphanomyces astaci] >gi|574099225|gb|ETV64854.1| hypothetical protein H257_18334 [Aphanomyces astaci]) HSP 1 Score: 134.806 bits (338), Expect = 8.858e-31 Identity = 94/257 (36.58%), Postives = 128/257 (49.81%), Query Frame = 0
Query: 105 ERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELS 361
++A ++ + RVPI+ F + +CD+C+ N A NT LL +Y D RV PL+L VK W ++ N A+Q SSY+ ++L IH+LQ LR+LP LQHPSLL P R+ G DV++C D A A F PV + L+ FF Y F + VVSIR M K + GG KT WRM++EDPFE DLG VL+ Q +L FR+A + L+
Sbjct: 407 QKAGCKVNNVIAHARVPIIKFLHVDSN--------------LECDICMENTLATKNTLLLRTYALFDSRVSPLVLAVKRWAKMRGVNDASQNTLSSYSYAILVIHFLQILRILPNLQHPSLLLNSP--RQTLNGHDVTFCTDFIACRAFF-PVANVDLSVGDLIVRFFDYVA-TFPWLTKVVSIRIND-MTKSE-------RWGGAAKT----WRMSIEDPFEST-----RDLGIVLQPLGQDKVLAEFRRAKQVLA 628
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|970648993|gb|KUF88385.1| (hypothetical protein AM588_10004802 [Phytophthora nicotianae]) HSP 1 Score: 132.109 bits (331), Expect = 7.593e-30 Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
A+ ++ + RVPI+ F G ++CDLC N+ A NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I YLQ +R+LP LQ P LL +Y ++++C D A A +L S L+ L+ GFF +Y QF+ VV++R + PA G R+ WRM+++DP E DLG VL+ Q+ ++ +A+ L+R
Sbjct: 533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|970648376|gb|KUF87935.1| (Terminal uridylyltransferase 4 [Phytophthora nicotianae]) HSP 1 Score: 132.109 bits (331), Expect = 7.664e-30 Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
A+ ++ + RVPI+ F G ++CDLC N+ A NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I YLQ +R+LP LQ P LL +Y ++++C D A A +L S L+ L+ GFF +Y QF+ VV++R + PA G R+ WRM+++DP E DLG VL+ Q+ ++ +A+ L+R
Sbjct: 533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|1214684578|gb|OWZ01992.1| (Poly(A) polymerase [Phytophthora megakarya]) HSP 1 Score: 132.109 bits (331), Expect = 7.718e-30 Identity = 84/259 (32.43%), Postives = 129/259 (49.81%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
A+ ++ + RVPI+ F ++G+E ++CDLC N+ A NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I+YLQ + +LP LQ P LL +Y +++YC D A A + L+TL+ GFF +Y QF+ + VV++R + PA G R+ WR++++DP E DLG VL+ Q+ ++ R+AY+ L++
Sbjct: 534 AKCEVRHVIAGARVPIIRFLHT--------RSGRE----YECDLCFENVLATRNTPLLRAYASFDDRARALGLAVKHWAKQRSISDASMGFLSSYSFVLLSIYYLQVVGVLPNLQAPQLLESARIGPDYYNDINIAYCEDRDTAQAFHKRISGGGSLHMSLTTLLLGFFEFYATQFDFAKRVVTVR------SPETPAVKLVQWGSRKTK---TWRISIQDPLETG-----RDLGCVLQFKGQEKIISELRRAYEMLAQ 766
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|567952382|gb|ETK78059.1| (hypothetical protein L915_15852 [Phytophthora parasitica]) HSP 1 Score: 132.109 bits (331), Expect = 7.883e-30 Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query: 107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
A+ ++ + RVPI+ F G ++CDLC N+ A NT LL +Y DDR R L L VK W + + A+ GF SSY+ LL I YLQ +R+LP LQ P LL +Y ++++C D A A +L S L+ L+ GFF +Y QF+ VV++R + PA G R+ WRM+++DP E DLG VL+ Q+ ++ +A+ L+R
Sbjct: 533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765 The following BLAST results are available for this feature:
BLAST of EWM24503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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