EWM24503.1, cds6170 (CDS) Nannochloropsis gaditana

Overview
NameEWM24503.1
Unique Namecds6170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:797085..797568 -
Alignment locationCM002467.1:796162..796859 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24503.1
ProductPAP/25A-associated
Orig transcript idgnl|cribi|Naga_100796g1.8936.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:797085..797568 -
CM002467.1supercontigCM002467.1:796162..796859 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002058PAP_assoc
IPR0189522-5-oligoAdlate_synth_1_dom2/C
Homology
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|585105998|gb|EWM24503.1| (PAP/25A-associated [Nannochloropsis gaditana])

HSP 1 Score: 812.372 bits (2097), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD 393
            MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD
Sbjct:    1 MQRMDAERALRRARTNAEILEKEFKLLKSRAETARPAFQATVGRLEALRQGKDAKRVREVEQVVAAVRAADKALEESKRLVFRVRRCLEKTGGGHRGQEMDNGKERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDKKRWKALFLGKKEAGAAKGMRD 393          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|301114445|ref|XP_002998992.1| (Poly(A) polymerase, putative [Phytophthora infestans T30-4] >gi|262111086|gb|EEY69138.1| Poly(A) polymerase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 140.584 bits (353), Expect = 1.141e-32
Identity = 91/270 (33.70%), Postives = 135/270 (50.00%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPA-EGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMEDK 372
            A+ ++   +   RVPI+ F                 G  ++CDLC +N+ A +NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I+YLQ +R+LP LQ P LL       ++    ++++C D   A A     L    S   L+TL+ GFF YY  QF+    VV++R        + PA + G  G  + KT    WRM+++DP E        DLG VL+   Q+ ++   R+A++ L+R   GE   D+
Sbjct:  515 AKCEVRHVIAGARVPIIRF------------LHTRSGRDYECDLCFDNVLATWNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIYYLQVVRVLPNLQAPGLLQSAQIQPQFYNDINIAFCEDRAVAQAFLERSLEGNSSDMSLATLLVGFFAYYATQFDFAERVVTVR------SPETPALKLGQWGSRKAKT----WRMSIQDPLETG-----RDLGCVLQFKGQERIIHELRRAHELLAR---GESFSDE 754          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|695464394|ref|XP_009538938.1| (hypothetical protein PHYSODRAFT_533748 [Phytophthora sojae] >gi|348665578|gb|EGZ05407.1| hypothetical protein PHYSODRAFT_533748 [Phytophthora sojae])

HSP 1 Score: 138.658 bits (348), Expect = 5.133e-32
Identity = 89/268 (33.21%), Postives = 134/268 (50.00%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSP---VLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSRVGTGERMED 371
            A+ ++   +   RVPI+ F           ++G+E    ++CDLC  N+ A  NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I+YLQ + +LP LQ P LL       +Y    ++++C D   A A   P   V  S   L+TL+ GFF +Y  QF+  + V+++R        + PA      G R+      WRM+++DP E        DLG VL+   Q+ ++   R+A++ L+R   GE   D
Sbjct:  542 AKCEVRHVIAGARVPIIRFLHT--------RSGRE----YECDLCFENVLATRNTPLLRAYASFDDRARALGLAVKHWAKQRSISDASMGFLSSYSFVLLSIYYLQVVHVLPNLQDPRLLETAQIRPDYYNDINIAFCEDRGIARAFHQPTSGVDASGLSLTTLLAGFFEFYATQFDFAKRVITVR------SPEKPALKVAQWGTRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQEKIIRELRRAHEMLAR---GESFSD 780          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|698825289|ref|XP_009845673.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574099226|gb|ETV64855.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 135.191 bits (339), Expect = 7.803e-31
Identity = 94/257 (36.58%), Postives = 128/257 (49.81%), Query Frame = 0
Query:  105 ERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELS 361
            ++A  ++   +   RVPI+ F  +                  +CD+C+ N  A  NT LL +Y   D RV PL+L VK W ++   N A+Q   SSY+ ++L IH+LQ LR+LP LQHPSLL   P  R+   G DV++C D  A  A F PV      +  L+  FF Y    F  +  VVSIR    M K +         GG  KT    WRM++EDPFE        DLG VL+   Q  +L  FR+A + L+
Sbjct:  403 QKAGCKVNNVIAHARVPIIKFLHVDSN--------------LECDICMENTLATKNTLLLRTYALFDSRVSPLVLAVKRWAKMRGVNDASQNTLSSYSYAILVIHFLQILRILPNLQHPSLLLNSP--RQTLNGHDVTFCTDFIACRAFF-PVANVDLSVGDLIVRFFDYVA-TFPWLTKVVSIRIND-MTKSE-------RWGGAAKT----WRMSIEDPFEST-----RDLGIVLQPLGQDKVLAEFRRAKQVLA 624          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|953503548|emb|CEG35558.1| (S-M checkpoint control protein CID1 and related nucleotidyltransferases [Plasmopara halstedii])

HSP 1 Score: 135.191 bits (339), Expect = 7.869e-31
Identity = 86/259 (33.20%), Postives = 131/259 (50.58%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
            A+ ++   +   RVPI+ F  +  +R          G  + CDLC  N+ A  NT LL +Y   D+R R L L+VK W +    + A+ GF SSY+  LLCI+YLQ + +LP LQ P LL       E     ++++C D + A       L    +S  L+TL+ GFF +Y  +F+  R VV+IR   ++       +    G  + KT    WRM+++DP E        DLG VL+   Q+ ++  FR+A++ L R
Sbjct:  523 AKCKVRHVITGARVPIIRF--LHTRR----------GQEYDCDLCFENVLATRNTPLLRAYAAFDERARNLGLVVKHWAKQRGISDASSGFLSSYSYVLLCIYYLQIVHVLPNLQDPQLLKSANIPPELYNDVNIAFCEDRSVAQTFHKRTLETNSTSMALTTLLAGFFEFYATRFDFARRVVTIRSPEIL-----ALKLAQWGSRKSKT----WRMSIQDPLETG-----RDLGCVLQFKGQEKIIREFRRAHEMLER 755          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|698825291|ref|XP_009845674.1| (hypothetical protein H257_18334 [Aphanomyces astaci] >gi|574099225|gb|ETV64854.1| hypothetical protein H257_18334 [Aphanomyces astaci])

HSP 1 Score: 134.806 bits (338), Expect = 8.858e-31
Identity = 94/257 (36.58%), Postives = 128/257 (49.81%), Query Frame = 0
Query:  105 ERARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVLPSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELS 361
            ++A  ++   +   RVPI+ F  +                  +CD+C+ N  A  NT LL +Y   D RV PL+L VK W ++   N A+Q   SSY+ ++L IH+LQ LR+LP LQHPSLL   P  R+   G DV++C D  A  A F PV      +  L+  FF Y    F  +  VVSIR    M K +         GG  KT    WRM++EDPFE        DLG VL+   Q  +L  FR+A + L+
Sbjct:  407 QKAGCKVNNVIAHARVPIIKFLHVDSN--------------LECDICMENTLATKNTLLLRTYALFDSRVSPLVLAVKRWAKMRGVNDASQNTLSSYSYAILVIHFLQILRILPNLQHPSLLLNSP--RQTLNGHDVTFCTDFIACRAFF-PVANVDLSVGDLIVRFFDYVA-TFPWLTKVVSIRIND-MTKSE-------RWGGAAKT----WRMSIEDPFEST-----RDLGIVLQPLGQDKVLAEFRRAKQVLA 628          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|970648993|gb|KUF88385.1| (hypothetical protein AM588_10004802 [Phytophthora nicotianae])

HSP 1 Score: 132.109 bits (331), Expect = 7.593e-30
Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
            A+ ++   +   RVPI+ F                 G  ++CDLC  N+ A  NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I YLQ +R+LP LQ P LL       +Y    ++++C D   A A    +L    S   L+ L+ GFF +Y  QF+    VV++R        + PA      G R+      WRM+++DP E        DLG VL+   Q+ ++    +A+  L+R
Sbjct:  533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|970648376|gb|KUF87935.1| (Terminal uridylyltransferase 4 [Phytophthora nicotianae])

HSP 1 Score: 132.109 bits (331), Expect = 7.664e-30
Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
            A+ ++   +   RVPI+ F                 G  ++CDLC  N+ A  NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I YLQ +R+LP LQ P LL       +Y    ++++C D   A A    +L    S   L+ L+ GFF +Y  QF+    VV++R        + PA      G R+      WRM+++DP E        DLG VL+   Q+ ++    +A+  L+R
Sbjct:  533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|1214684578|gb|OWZ01992.1| (Poly(A) polymerase [Phytophthora megakarya])

HSP 1 Score: 132.109 bits (331), Expect = 7.718e-30
Identity = 84/259 (32.43%), Postives = 129/259 (49.81%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
            A+ ++   +   RVPI+ F           ++G+E    ++CDLC  N+ A  NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I+YLQ + +LP LQ P LL       +Y    +++YC D   A A    +         L+TL+ GFF +Y  QF+  + VV++R        + PA      G R+      WR++++DP E        DLG VL+   Q+ ++   R+AY+ L++
Sbjct:  534 AKCEVRHVIAGARVPIIRFLHT--------RSGRE----YECDLCFENVLATRNTPLLRAYASFDDRARALGLAVKHWAKQRSISDASMGFLSSYSFVLLSIYYLQVVGVLPNLQAPQLLESARIGPDYYNDINIAYCEDRDTAQAFHKRISGGGSLHMSLTTLLLGFFEFYATQFDFAKRVVTVR------SPETPAVKLVQWGSRKTK---TWRISIQDPLETG-----RDLGCVLQFKGQEKIISELRRAYEMLAQ 766          
BLAST of EWM24503.1 vs. NCBI_GenBank
Match: gi|567952382|gb|ETK78059.1| (hypothetical protein L915_15852 [Phytophthora parasitica])

HSP 1 Score: 132.109 bits (331), Expect = 7.883e-30
Identity = 84/259 (32.43%), Postives = 123/259 (47.49%), Query Frame = 0
Query:  107 ARYQILRTLHTVRVPIVTFKDMGDKRKQAGKAGKEGGGAWQCDLCINNIGAVYNTALLYSYLQCDDRVRPLILLVKAWTRVHQCNGAAQGFFSSYALSLLCIHYLQQLRLLPVLQHPSLLPPHPRDREYCFGCDVSYCADITAANAAFSPVL---PSSFPLSTLVRGFFHYYGYQFNPVRTVVSIRQRMLMDKGDVPAEGGPSGGGRRKTFKVLWRMAVEDPFECCGSAKEHDLGDVLKVDKQKMMLDGFRKAYKELSR 362
            A+ ++   +   RVPI+ F                 G  ++CDLC  N+ A  NT LL +Y   DDR R L L VK W +    + A+ GF SSY+  LL I YLQ +R+LP LQ P LL       +Y    ++++C D   A A    +L    S   L+ L+ GFF +Y  QF+    VV++R        + PA      G R+      WRM+++DP E        DLG VL+   Q+ ++    +A+  L+R
Sbjct:  533 AKCEVRHVIAGARVPIIRFMHT------------RSGRDYECDLCFENVLATRNTPLLRAYASFDDRARTLGLAVKHWAKQRGISDASMGFLSSYSFVLLSIFYLQVVRVLPNLQDPRLLESAQIQPQYYNDINIAFCEDQDVAQAFHKRLLNGNASDMSLTALLVGFFEFYATQFDFAERVVTVR------SPETPALKLAQWGSRKAK---TWRMSIQDPLETG-----RDLGCVLQFKGQERIIRELHRAHDMLAR 765          
The following BLAST results are available for this feature:
BLAST of EWM24503.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105998|gb|EWM24503.1|0.000e+0100.00PAP/25A-associated [Nannochloropsis gaditana][more]
gi|301114445|ref|XP_002998992.1|1.141e-3233.70Poly(A) polymerase, putative [Phytophthora infesta... [more]
gi|695464394|ref|XP_009538938.1|5.133e-3233.21hypothetical protein PHYSODRAFT_533748 [Phytophtho... [more]
gi|698825289|ref|XP_009845673.1|7.803e-3136.58hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|953503548|emb|CEG35558.1|7.869e-3133.20S-M checkpoint control protein CID1 and related nu... [more]
gi|698825291|ref|XP_009845674.1|8.858e-3136.58hypothetical protein H257_18334 [Aphanomyces astac... [more]
gi|970648993|gb|KUF88385.1|7.593e-3032.43hypothetical protein AM588_10004802 [Phytophthora ... [more]
gi|970648376|gb|KUF87935.1|7.664e-3032.43Terminal uridylyltransferase 4 [Phytophthora nicot... [more]
gi|1214684578|gb|OWZ01992.1|7.718e-3032.43Poly(A) polymerase [Phytophthora megakarya][more]
gi|567952382|gb|ETK78059.1|7.883e-3032.43hypothetical protein L915_15852 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6185rna6185Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications