rna6183, rna6183 (mRNA) Nannochloropsis gaditana

Overview
Namerna6183
Unique Namerna6183
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length333
Alignment locationCM002467.1:791961..793146 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100796g4.8938.mrna
Orig protein idgnl|cribi|Naga_100796g4.8938
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:791961..793146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100796g4gene5973Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6183rna6183-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24505.1cds6168Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6183 ID=rna6183|Name=rna6183|organism=Nannochloropsis gaditana|type=mRNA|length=333bp
ATGCTTCTGATCCTGATTTTCGCGGAGGCGGCTCTACGGCCTGATCGTCT
CCCTGATCTTGTCCCAGCAGAACGTGTACTGCCAGGCATGAGCTCCCGGG
GCTTTTTGTTTGTTTCTTCCTTCTTTGCCTCCTGCATTCGAGCTGGCACG
TGCGAGGAAGGGAAAGAAAATGAAAAAATTGAAACGGGGAGGAAGCAAAA
CACGCGACAGAAAGAAAAAGAAAGCAGCAAAGATGGCAAAGGGATAGACG
AGAACAAGCGGAGTAGGGGAACGGGCGTGGTTGTGGAGGTCTTTAAGGAA
ATCATAGCACCTTTGCTTGCGGACAGGATTTAA
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protein sequence of rna6183

>rna6183-protein ID=rna6183-protein|Name=rna6183|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MCTIFRKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHL
PPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALK
AEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLP
YEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQAL
RESVTAVRGKEGFPDLADPCLAFSQRVVCFLLYVILPGWYVFTFVFFFQN
KEALFGSRPTSTGDRGRGLQPLSVPPLEIRTTPRARQGGERLYRFSGR
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mRNA from alignment at CM002467.1:791961..793146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6183 ID=rna6183|Name=rna6183|organism=Nannochloropsis gaditana|type=mRNA|length=1186bp|location=Sequence derived from alignment at CM002467.1:791961..793146- (Nannochloropsis gaditana)
CTCAAACGCTTGCGAAGCGTTCTTACCTGACCATTAATGTGCACTATTTT
TAGGAAAGACGTGGACAAACAAATAATTCACCAGGTACAAGGAGGCTCAA
GACTTTCGACGTTTTGTTCCGGGCACTTCCACCACCTCCCATCTCCTGAC
TACACAGTAGGCATGAATGGAATGCAATATCACCTTCCTCCCGGCTCTTA
CGCCCCCGTGCAAAGCTATTCGAGGGATCAGGAGCAGCAATCGAAGAGCT
TCGACGGGGCTGCGACAAGCAGAGCCATTCCTCAGCGGCTAATGAAGCGC
TACCGGATAGTGCAGACACTATGTGAAGCATTGAAGGCAGAGCCAGCTTG
TGTGAGTCTAACGCACGTGTTTCATTTGCTAAAGCACGCGAAATATCCAC
GATCACGCTCTCTGACCAATGCTATACTGATCACGGCCTGGGGGGACCTC
AACGATTTACTGTACGCATTCGGGGTAAGCACCAGGGGGATAGAAGGGGG
ATTACGTAATCATGCAGGGAGGAAGCCTCGCGCATGAGGAGGACATGCGT
GCAAGGTGAACATCGGGTGTGCTTATGGGACAAGAAACGGGCAGAAGATG
ATATGGGCAGCATATAGTACAAGGAGGAAAGAAGCTCTCAGGTGTTCATA
TCTCTTTTCTCCCATGTAGGGCTTACTTCCCTACGAAATCTACGACAAAG
TCTTGGAAATGTACGGCGAGGATGCGGCTTTGCTGATGATCAATTGCGAC
AATTCCTGGCTGAGCGGATCCGCTTCCTACTTCCAAAATCCCGGCCGTCG
CGTCCCTCTCTTGGACAGCCTCCAGGCCTTGCGGGAAAGCGTAACGGCGG
TGCGTGGCAAGGAGGGCTTTCCCGACCTCGCTGACCCTTGCCTCGCCTTT
TCCCAACGTGTGGTCTGCTTTTTGCTCTATGTTATCCTTCCGGGCTGGTA
TGTCTTTACATTTGTTTTTTTTTTTCAAAATAAAGAGGCCCTTTTTGGTT
CTCGTCCCACGTCCACAGGAGACAGAGGGCGAGGCCTACAGCCTCTGTCA
GTTCCTCCTCTGGAAATCAGGACAACTCCCCGGGCGCGCCAAGGGGGAGA
ACGGCTTTACAGATTTTCAGGACGTTGAGGTGTTAGGCCAATGGATGAGG
ATCTGCGTGAACGCGAGCCAGTCCACGGAGGGGGGG
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Coding sequence (CDS) from alignment at CM002467.1:791961..793146-

>rna6183 ID=rna6183|Name=rna6183|organism=Nannochloropsis gaditana|type=CDS|length=1794bp|location=Sequence derived from alignment at CM002467.1:791961..793146- (Nannochloropsis gaditana)
GGCTTACTTCCCTACGAAATCTACGACAAAGTCTTGGAAATGTACGGCGA
GGATGCGGCTTTGCTGATGATCAATTGCGACAATTCCTGGCTGAGCGGAT
CCGCTTCCTACTTCCAAAATCCCGGCCGTCGCGTCCCTCTCTTGGACAGC
CTCCAGGCCTTGCGGGAAAGCGTAACGGCGGTGCGTGGCAAGGAGGGCTT
TCCCGACCTCGCTGACCCTTGCCTCGCCTTTTCCCAACGTGTGGTCTGCT
TTTTGCTCTATGTTATCCTTCCGGGCTGGTATGTCTTTACATTTGTTTTT
TTTTTTCAAAATAAAGAGGCCCTTTTTGGTTCTCGTCCCACGTCCACAGG
AGACAGAGGGCGAGGCCTACAGCCTCTGTCAGTTCCTCCTCTGGAAATCA
GGACAACTCCCCGGGCGCGCCAAGGGGGAGAACGGCTTTACAGATTTTCA
GGACGTTGAATGTGCACTATTTTTAGGAAAGACGTGGACAAACAAATAAT
TCACCAGGTACAAGGAGGCTCAAGACTTTCGACGTTTTGTTCCGGGCACT
TCCACCACCTCCCATCTCCTGACTACACAGTAGGCATGAATGGAATGCAA
TATCACCTTCCTCCCGGCTCTTACGCCCCCGTGCAAAGCTATTCGAGGGA
TCAGGAGCAGCAATCGAAGAGCTTCGACGGGGCTGCGACAAGCAGAGCCA
TTCCTCAGCGGCTAATGAAGCGCTACCGGATAGTGCAGACACTATGTGAA
GCATTGAAGGCAGAGCCAGCTTGTGTGAGTCTAACGCACGTGTTTCATTT
GCTAAAGCACGCGAAATATCCACGATCACGCTCTCTGACCAATGCTATAC
TGATCACGGCCTGGGGGGACCTCAACGATTTACTGTACGCATTCGGGGGC
TTACTTCCCTACGAAATCTACGACAAAGTCTTGGAAATGTACGGCGAGGA
TGCGGCTTTGCTGATGATCAATTGCGACAATTCCTGGCTGAGCGGATCCG
CTTCCTACTTCCAAAATCCCGGCCGTCGCGTCCCTCTCTTGGACAGCCTC
CAGGCCTTGCGGGAAAGCGTAACGGCGGTGCGTGGCAAGGAGGGCTTTCC
CGACCTCGCTGACCCTTGCCTCGCCTTTTCCCAACGTGTGGTCTGCTTTT
TGCTCTATGTTATCCTTCCGGGCTGGTATGTCTTTACATTTGTTTTTTTT
TTTCAAAATAAAGAGGCCCTTTTTGGTTCTCGTCCCACGTCCACAGGAGA
CAGAGGGCGAGGCCTACAGCCTCTGTCAGTTCCTCCTCTGGAAATCAGGA
CAACTCCCCGGGCGCGCCAAGGGGGAGAACGGCTTTACAGATTTTCAGGA
CGTTGAATGTGCACTATTTTTAGGAAAGACGTGGACAAACAAATAATTCA
CCAGGTACAAGGAGGCTCAAGACTTTCGACGTTTTGTTCCGGGCACTTCC
ACCACCTCCCATCTCCTGACTACACAGTAGGCATGAATGGAATGCAATAT
CACCTTCCTCCCGGCTCTTACGCCCCCGTGCAAAGCTATTCGAGGGATCA
GGAGCAGCAATCGAAGAGCTTCGACGGGGCTGCGACAAGCAGAGCCATTC
CTCAGCGGCTAATGAAGCGCTACCGGATAGTGCAGACACTATGTGAAGCA
TTGAAGGCAGAGCCAGCTTGTGTGAGTCTAACGCACGTGTTTCATTTGCT
AAAGCACGCGAAATATCCACGATCACGCTCTCTGACCAATGCTATACTGA
TCACGGCCTGGGGGGACCTCAACGATTTACTGTACGCATTCGGG
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Synonyms
Publications