EWM24505.1, cds6168 (CDS) Nannochloropsis gaditana

Overview
NameEWM24505.1
Unique Namecds6168
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:792673..793110 -
Alignment locationCM002467.1:792019..792477 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24505.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100796g4.8938.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:792673..793110 -
CM002467.1supercontigCM002467.1:792019..792477 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24505.1 vs. NCBI_GenBank
Match: gi|585106000|gb|EWM24505.1| (hypothetical protein Naga_100796g4 [Nannochloropsis gaditana])

HSP 1 Score: 620.542 bits (1599), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 
Query:    1 MCTIFRKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAVRGKEGFPDLADPCLAFSQRVVCFLLYVILPGWYVFTFVFFFQNKEALFGSRPTSTGDRGRGLQPLSVPPLEIRTTPRARQGGERLYRFSGR 298
            MCTIFRKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAVRGKEGFPDLADPCLAFSQRVVCFLLYVILPGWYVFTFVFFFQNKEALFGSRPTSTGDRGRGLQPLSVPPLEIRTTPRARQGGERLYRFSGR
Sbjct:    1 MCTIFRKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAVRGKEGFPDLADPCLAFSQRVVCFLLYVILPGWYVFTFVFFFQNKEALFGSRPTSTGDRGRGLQPLSVPPLEIRTTPRARQGGERLYRFSGR 298
[Close]
BLAST of EWM24505.1 vs. NCBI_GenBank
Match: gi|553191695|ref|XP_005855435.1| (hypothetical protein NGA_0126100, partial [Nannochloropsis gaditana CCMP526] >gi|422293628|gb|EKU20928.1| hypothetical protein NGA_0126100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 420.239 bits (1079), Expect = 1.670e-146
Identity = 202/208 (97.12%), Postives = 203/208 (97.60%), Query Frame = 0 
Query:    6 RKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAVRGKEGF 213
            RKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTA    E +
Sbjct:    1 RKDVDKQIIHQVQGGSRLSTFCSGHFHHLPSPDYTVGMNGMQYHLPPGSYAPVQSYSRDQEQQSKSFDGAATSRAIPQRLMKRYRIVQTLCEALKAEPACVSLTHVFHLLKHAKYPRSRSLTNAILITAWGDLNDLLYAFGGLLPYEIYDKVLEMYGEDAALLMINCDNSWLSGSASYFQNPGRRVPLLDSLQALRESVTAETEGEAY 208
The following BLAST results are available for this feature:
BLAST of EWM24505.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106000|gb|EWM24505.1|0.000e+0100.00hypothetical protein Naga_100796g4 [Nannochloropsi... [more]
gi|553191695|ref|XP_005855435.1|1.670e-14697.12hypothetical protein NGA_0126100, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6183rna6183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications