rna6180, rna6180 (mRNA) Nannochloropsis gaditana

Overview
Namerna6180
Unique Namerna6180
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length681
Alignment locationCM002467.1:784826..786360 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100954g2.10134.mrna
Orig protein idgnl|cribi|Naga_100954g2.10134
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:784826..786360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100954g2gene5970Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6180rna6180-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24509.1cds6165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6180 ID=rna6180|Name=rna6180|organism=Nannochloropsis gaditana|type=mRNA|length=681bp
TCTCAATCATCCCCCACCTTGTCAAGACAGAGAGCCATGGGTAAAAGTAG
CGAGAAATATAAGAAACGGTCGCGGTCGGACGCCGAGGTGGAAGAGGGTA
GCGGGACCTCTGGGGACGATACTTCTAGTAGCCGCCACAGCGACGAAAGG
AAGCGGCGGAAACACAAGCACAAGACATCGAGTAGAACCCATAAGAGCAG
CAGCGGCAGCAGGAGAAAGCATAAAAAGCGCAGGGAAAGGTCTCCTAGCC
CCGACGCCTCGGTTGCCTCCAGCCACAGGGACAGAAAGAAGGCGTCCAAG
CAGAAGAAGGACGGAAGCAGGAAAAAGGAGGACGCGGGTGGCCAAAATGG
GGGCGCGAATTGGTCCCGCTTGGCTGAAAGTGCCGAAGAGCGGGCGGCTC
GAAAAGCAGCCAAAGAAGCGAAGAAGATTGCCAGCATGTTTGGATACACA
TCGCACAGCAATCCGTTTGGCGACGCGAATCTGCACCAACAGTTTGTGTG
GAAAGCGAAAGAACAACAGCAGGCGTCGAAGAAGGGAGGGCGGGAGGGAG
GGCAGGAGGTAGGGGAAAAGAAAGTCAGCGAGGCGGAACGACGGCTGGAG
CTGATCCGGGAGATTGAGAAAGTGCGGAAACGAAGGGAAGAGAGGGAGAA
GGAGCAGGAGGAGATGGAACGGCTCCGGGCT
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protein sequence of rna6180

>rna6180-protein ID=rna6180-protein|Name=rna6180|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSS
SSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDS
VESFAKVDISRAARTGLPEVSSARGENREAETSWPI
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mRNA from alignment at CM002467.1:784826..786360+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6180 ID=rna6180|Name=rna6180|organism=Nannochloropsis gaditana|type=mRNA|length=1535bp|location=Sequence derived from alignment at CM002467.1:784826..786360+ (Nannochloropsis gaditana)
CAGGTACTTCGTAATTTCGCAAGGACAGAGCCACAGAAGGCAAATTATCG
ACGGTAAGAAAGCCACGCGTTGTGAAACTCGATCCCTTTTCAGCAAAAGG
GACTTCTGTCTGAAGAGAAATCGCCTATACGTTGGGCAAAAAGATGGGCC
TTCCTAGCCTCTCAACGTACCATAAATTGTCCCCACACGTTTATGCCGAC
GAGAAAGTATCTTCCGTCTTGCTCCATACTCGACAGAACGTATTTACTAC
ATTTTCACACCTTTTGCTTTTCCAAAATTAACACCAACCATAACCTCGCT
TATTCCTGTATTGTGTGCAGCGGCTACTGCGGGGGGCACGAGAACAAAAT
CAAGGCCATCGCGGGTCTTACAGCGTTCTCCAAAGAGGACAAGTCCGGTC
TCGCAGCCATTGTGATTTACTACTGTGGTCGCACAGCTACTGGAAAAACT
AACATCTTTCTGGGCTGATAAAAAGCATCGCTTTTTTCCACACCGTGACA
GTTGTGGCGATTCCTACAGTAAGTGTGAGCGTGTGTAGGCAGGCGCCTTG
TGTGCTCTTTTTTGTTGAAAAGCACTATCACAGAAGGCTTTGTCCCCGTC
TCGTTCATACGTGGGTAAACTGATTTGACTCGAAGCGTTTCTGGTCTTTA
AAATGGACGCAGTTTTCTCGGCATGTGATGGCCAGCAGGTGGTTTTGACG
TTATAGAGGTACTATCGATCAccttgcttccctccaaACGCAACAAGAGA
TATACGCCTGTAACACAACACGTCCAGTCAATCCAACTCAGATGGCTACA
CTGAAAAAAGAGCTTGCACACTTGTGTACAAGCACATGGTTGGCAAAggc
tccctcttttcctcacATTGcattaacctcccccccaacgcCAAAAGCAA
ACCTCCTGCAAACGTAATTTACGAGATGAGTTCATCACGTATTTGGGAGG
TTACTATTTTCTCAGTCTTAGCTTTTTTCCCTCGAACTAAACGTCAGGTC
ACAGTGGCAGAAGGAGGGTTGCGGTAGATGTGGGGGTGAGGCGTCTTTAT
TTCTCACATGCCGTCTTACCCAGTTCTCTGCAGCCGCCGcccatttttcc
ttcttcctgtccttcgTACCTTTCTTGCAACCGCCTATCCGACATCTTCC
GCCAATGTCCAGTCACGTGTCGGTCCGcaagtctcctcctccttcttttc
ctcctcttcctccgattCCATGTCAGGGATCTTGTCTCGGCTCTCCCACG
GTAAAATCACGCCATTCGAGGCCGAAACCGAGCTGCTTCGACTTCAACCA
CACATATggaaaggagcagcaggagaaAACACGGAGAAAGCAAAGGGATA
CGACTCGGTAGAAAGCTTTGCCAAGGTCGACATATCTAGGGCGGCACGCA
CCGGATTGCCGGAGGTGAGTTcagcaaggggggagaatCGGGAGGCGGAA
ACATCGTGGCCAATATAGGAGGAAAAcatcaggaggaggaagaattaGCT
CCAGCGTATCTCCTTCTTTGGTCGTTCCAGCCTCC
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Coding sequence (CDS) from alignment at CM002467.1:784826..786360+

>rna6180 ID=rna6180|Name=rna6180|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002467.1:784826..786360+ (Nannochloropsis gaditana)
ATGCCGTCTTACCCAGTTCTCTGCAGCCGCCGcccatttttccttcttcc
tgtccttcgTACCTTTCTTGCAACCGCCTATCCGACATCTTCCGCCAATG
TCCAGTCACGTGTCGGTCCGcaagtctcctcctccttcttttcctcctct
tcctccgattCCATGTCAGGGATCTTGTCTCGGCTCTCCCACGGTAAAAT
CACGCCATTCGAGGCCGAAACCGAGCTGCTTCGACTTCAACCACACATAT
ggaaaggagcagcaggagaaAACACGGAGAAAGCAAAGGGATACGACTCG
GTAGAAAGCTTTGCCAAGGTCGACATATCTAGGGCGGCACGCACCGGATT
GCCGGAGGTGAGTTcagcaaggggggagaatCGGGAGGCGGAAACATCGT
GGCCAATATAG
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Synonyms
Publications