EWM24509.1, cds6165 (CDS) Nannochloropsis gaditana

Overview
NameEWM24509.1
Unique Namecds6165
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:785883..786293 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24509.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100954g2.10134.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:785883..786293 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24509.1 vs. NCBI_GenBank
Match: gi|585106008|gb|EWM24509.1| (hypothetical protein Naga_100954g2 [Nannochloropsis gaditana])

HSP 1 Score: 276.174 bits (705), Expect = 5.517e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 
Query:    1 MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPEVSSARGENREAETSWPI 136
            MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPEVSSARGENREAETSWPI
Sbjct:    1 MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPEVSSARGENREAETSWPI 136
[Close]
BLAST of EWM24509.1 vs. NCBI_GenBank
Match: gi|553191683|ref|XP_005855432.1| (hypothetical protein NGA_0125800 [Nannochloropsis gaditana CCMP526] >gi|422293625|gb|EKU20925.1| hypothetical protein NGA_0125800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.662 bits (618), Expect = 7.588e-81
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 
Query:    1 MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPE 119
            MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPE
Sbjct:    1 MPSYPVLCSRRPFFLLPVLRTFLATAYPTSSANVQSRVGPQVSSSFFSSSSSDSMSGILSRLSHGKITPFEAETELLRLQPHIWKGAAGENTEKAKGYDSVESFAKVDISRAARTGLPE 119
The following BLAST results are available for this feature:
BLAST of EWM24509.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106008|gb|EWM24509.1|5.517e-94100.00hypothetical protein Naga_100954g2 [Nannochloropsi... [more]
gi|553191683|ref|XP_005855432.1|7.588e-81100.00hypothetical protein NGA_0125800 [Nannochloropsis ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6180rna6180Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications