rna6179, rna6179 (mRNA) Nannochloropsis gaditana

Overview
Namerna6179
Unique Namerna6179
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationCM002467.1:782834..783786 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100954g1.10133.mrna
Orig protein idgnl|cribi|Naga_100954g1.10133
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:782834..783786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100954g1gene5969Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6179rna6179-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24508.1cds6164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6179 ID=rna6179|Name=rna6179|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
ATGTGGCGCCGGCTACGCTACGACGATTCTACCGCCGCGCTCGCCCTCCT
GTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAGCCACGCTGGGCA
AGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAGGGAGGGGCGGAG
GGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAAGTACCGACCTCG
GAAGCCACGGTACTTCAACCGGGTCAAGACAGGCTGGGACTGGAACATGT
ACAACCGGACCCACTACGACCACGACAACCCCCCGCCCAAGACCGTCCAA
GGTTACAAATTTAACGTCTTTTATCCTGACCTGATCGACAAGACGAAGGC
CCCGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATAATTC
GCTTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCTGAAT
AAGGAGTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAACG
GGGAATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCGTT
AA
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protein sequence of rna6179

>rna6179-protein ID=rna6179-protein|Name=rna6179|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MGKSSEKYKKRSRSDAEVEEGSGTSGDDTSSSRHSDERKRRKHKHKTSSR
THKSSSGSRRKHKKRRERSPSPDASVASSHRDRKKASKQKKDGSRKKEDA
GGQNGGANWSRLAESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLH
QQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRR
EEREKEQEEMERLRA
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mRNA from alignment at CM002467.1:782834..783786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6179 ID=rna6179|Name=rna6179|organism=Nannochloropsis gaditana|type=mRNA|length=953bp|location=Sequence derived from alignment at CM002467.1:782834..783786- (Nannochloropsis gaditana)
TCTCAATCATCCCCCACCTTGTCAAGACAGAGAGCCATGGGTAAAAGTAG
CGAGAAATATAAGAAACGGTCGCGGTCGGACGCCGAGGTGGAAGAGGGTA
GCGGGACCTCTGGGGACGATACTTCTAGTAGCCGCCACAGCGACGAAAGG
AAGCGGCGGAAACACAAGCACAAGACATCGAGTAGAACCCATAAGAGCAG
CAGCGGCAGCAGGAGAAAGCATAAAAAGCGCAGGGAAAGGTCTCCTAGCC
CCGACGCCTCGGTTGCCTCCAGGTAAGATGGACGACAGAAGGGAAGAGCA
GAGGGTAAGGTGAAGCGGAAGCAGTAAGGAATGGCACATCCACATGCGTT
TACACAGCCACAGGGACAGAAAGAAGGCGTCCAAGCAGAAGAAGGACGGA
AGCAGGAAAAAGGAGGACGCGGGTGGCCAAAATGGGGGCGCGAATTGGTC
CCGCTTGGCTGAAAGTGCCGAAGAGCGGGCGGCTCGAAAAGCAGCCAAAG
AAGCGAAGAAGATTGCCAGCATGTTTGGGTAAAGAGGGGAGGGTAGGCGA
GGCCATGGGGGGCAGGAAGAGAGGCTTGTGGGACGTGAAACTTGGGAATG
GGCATGGGAGAGGGGAAAGTAGTGCAGGAAGGCTTCCGCACGACGACTAC
TCCGACCATGGCGTTGCCTTGACCTCCCTCCCTCCTTCCTTCCTTCCCTC
CCTCCCTCTCCAAAGATACACATCGCACAGCAATCCGTTTGGCGACGCGA
ATCTGCACCAACAGTTTGTGTGGAAAGCGAAAGAACAACAGCAGGCGTCG
AAGAAGGGAGGGCGGGAGGGAGGGCAGGAGGTAGGGGAAAAGAAAGTCAG
CGAGGCGGAACGACGGCTGGAGCTGATCCGGGAGATTGAGAAAGTGCGGA
AACGAAGGGAAGAGAGGGAGAAGGAGCAGGAGGAGATGGAACGGCTCCGG
GCT
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Coding sequence (CDS) from alignment at CM002467.1:782834..783786-

>rna6179 ID=rna6179|Name=rna6179|organism=Nannochloropsis gaditana|type=CDS|length=1935bp|location=Sequence derived from alignment at CM002467.1:782834..783786- (Nannochloropsis gaditana)
ATACACATCGCACAGCAATCCGTTTGGCGACGCGAATCTGCACCAACAGT
TTGTGTGGAAAGCGAAAGAACAACAGCAGGCGTCGAAGAAGGGAGGGCGG
GAGGGAGGGCAGGAGGTAGGGGAAAAGAAAGTCAGCGAGGCGGAACGACG
GCTGGAGCTGATCCGGGAGATTGAGAAAGTGCGGAAACGAAGGGAAGAGA
GGGAGAAGGAGCAGGAGGAGATGGAACGGCTCCGGGCTCCACAGGGACAG
AAAGAAGGCGTCCAAGCAGAAGAAGGACGGAAGCAGGAAAAAGGAGGACG
CGGGTGGCCAAAATGGGGGCGCGAATTGGTCCCGCTTGGCTGAAAGTGCC
GAAGAGCGGGCGGCTCGAAAAGCAGCCAAAGAAGCGAAGAAGATTGCCAG
CATGTTTGGATGGGTAAAAGTAGCGAGAAATATAAGAAACGGTCGCGGTC
GGACGCCGAGGTGGAAGAGGGTAGCGGGACCTCTGGGGACGATACTTCTA
GTAGCCGCCACAGCGACGAAAGGAAGCGGCGGAAACACAAGCACAAGACA
TCGAGTAGAACCCATAAGAGCAGCAGCGGCAGCAGGAGAAAGCATAAAAA
GCGCAGGGAAAGGTCTCCTAGCCCCGACGCCTCGGTTGCCTCCAGATACA
CATCGCACAGCAATCCGTTTGGCGACGCGAATCTGCACCAACAGTTTGTG
TGGAAAGCGAAAGAACAACAGCAGGCGTCGAAGAAGGGAGGGCGGGAGGG
AGGGCAGGAGGTAGGGGAAAAGAAAGTCAGCGAGGCGGAACGACGGCTGG
AGCTGATCCGGGAGATTGAGAAAGTGCGGAAACGAAGGGAAGAGAGGGAG
AAGGAGCAGGAGGAGATGGAACGGCTCCGGGCTCCACAGGGACAGAAAGA
AGGCGTCCAAGCAGAAGAAGGACGGAAGCAGGAAAAAGGAGGACGCGGGT
GGCCAAAATGGGGGCGCGAATTGGTCCCGCTTGGCTGAAAGTGCCGAAGA
GCGGGCGGCTCGAAAAGCAGCCAAAGAAGCGAAGAAGATTGCCAGCATGT
TTGGATGGGTAAAAGTAGCGAGAAATATAAGAAACGGTCGCGGTCGGACG
CCGAGGTGGAAGAGGGTAGCGGGACCTCTGGGGACGATACTTCTAGTAGC
CGCCACAGCGACGAAAGGAAGCGGCGGAAACACAAGCACAAGACATCGAG
TAGAACCCATAAGAGCAGCAGCGGCAGCAGGAGAAAGCATAAAAAGCGCA
GGGAAAGGTCTCCTAGCCCCGACGCCTCGGTTGCCTCCAGATACACATCG
CACAGCAATCCGTTTGGCGACGCGAATCTGCACCAACAGTTTGTGTGGAA
AGCGAAAGAACAACAGCAGGCGTCGAAGAAGGGAGGGCGGGAGGGAGGGC
AGGAGGTAGGGGAAAAGAAAGTCAGCGAGGCGGAACGACGGCTGGAGCTG
ATCCGGGAGATTGAGAAAGTGCGGAAACGAAGGGAAGAGAGGGAGAAGGA
GCAGGAGGAGATGGAACGGCTCCGGGCTCCACAGGGACAGAAAGAAGGCG
TCCAAGCAGAAGAAGGACGGAAGCAGGAAAAAGGAGGACGCGGGTGGCCA
AAATGGGGGCGCGAATTGGTCCCGCTTGGCTGAAAGTGCCGAAGAGCGGG
CGGCTCGAAAAGCAGCCAAAGAAGCGAAGAAGATTGCCAGCATGTTTGGA
TGGGTAAAAGTAGCGAGAAATATAAGAAACGGTCGCGGTCGGACGCCGAG
GTGGAAGAGGGTAGCGGGACCTCTGGGGACGATACTTCTAGTAGCCGCCA
CAGCGACGAAAGGAAGCGGCGGAAACACAAGCACAAGACATCGAGTAGAA
CCCATAAGAGCAGCAGCGGCAGCAGGAGAAAGCATAAAAAGCGCAGGGAA
AGGTCTCCTAGCCCCGACGCCTCGGTTGCCTCCAG
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Synonyms
Publications