EWM24508.1, cds6164 (CDS) Nannochloropsis gaditana

Overview
NameEWM24508.1
Unique Namecds6164
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:783515..783750 -
Alignment locationCM002467.1:783259..783429 -
Alignment locationCM002467.1:782834..783071 -

Link to JBrowse

Properties
Property NameValue
Start range782834
Start range.
Protein idEWM24508.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100954g1.10133.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:783515..783750 -
CM002467.1supercontigCM002467.1:783259..783429 -
CM002467.1supercontigCM002467.1:782834..783071 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|585106007|gb|EWM24508.1| (hypothetical protein Naga_100954g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 416.772 bits (1070), Expect = 5.235e-147
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MGKSSEKYKKRSRSDAEVEEGSGTSGDDTSSSRHSDERKRRKHKHKTSSRTHKSSSGSRRKHKKRRERSPSPDASVASSHRDRKKASKQKKDGSRKKEDAGGQNGGANWSRLAESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA 215
            MGKSSEKYKKRSRSDAEVEEGSGTSGDDTSSSRHSDERKRRKHKHKTSSRTHKSSSGSRRKHKKRRERSPSPDASVASSHRDRKKASKQKKDGSRKKEDAGGQNGGANWSRLAESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA
Sbjct:    1 MGKSSEKYKKRSRSDAEVEEGSGTSGDDTSSSRHSDERKRRKHKHKTSSRTHKSSSGSRRKHKKRRERSPSPDASVASSHRDRKKASKQKKDGSRKKEDAGGQNGGANWSRLAESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA 215          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|1210520126|dbj|GAX21009.1| (hypothetical protein FisN_1Lu323 [Fistulifera solaris])

HSP 1 Score: 84.3445 bits (207), Expect = 2.444e-15
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 0
Query:  114 ESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA 215
            E+ EER AR+A K A  I+  FGYT  +NPF D NLH++F W+ KE Q         G ++V +KK        E   EIEKVR+RR ER+ ++EEMER+RA
Sbjct:  106 ETLEERNARRAEKRAALISQKFGYTVDNNPFNDPNLHEKFTWRKKETQN--------GSEQVPKKKD-------ETFLEIEKVRQRRTERDLQREEMERIRA 192          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|1210530499|dbj|GAX10884.1| (hypothetical protein FisN_UnNu012 [Fistulifera solaris])

HSP 1 Score: 77.7962 bits (190), Expect = 4.775e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 0
Query:  114 ESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA 215
            E+ EER AR+A K A  I+  FGYT  +NPF D NLH++F W+ KE    S++  +               ++ +   EIEKVR+RR ER+ ++EEMER+RA
Sbjct:  112 ETLEERNARRAEKRAALISQKFGYTVDNNPFNDPNLHEKFTWRKKEAHNDSEQAPK---------------KKDDTFFEIEKVRQRRTERDLQREEMERIRA 198          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|397614358|gb|EJK62750.1| (hypothetical protein THAOC_16625 [Thalassiosira oceanica])

HSP 1 Score: 72.7886 bits (177), Expect = 2.464e-11
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  135 FGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKEQEEMERLRA 215
            FGYT+  NPFGDANLH  F WK K +  A+K  G E   +   ++    +++     EIEKVR+RRE RE   EEMER+RA
Sbjct:  166 FGYTAEDNPFGDANLHDTFTWKKKNEMVAAKAKGSEAASDTKGRR----DQQDHTFAEIEKVRQRREAREAHFEEMERIRA 242          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|298706461|emb|CBJ29448.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.814e-10
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 0
Query:  111 RLAESAEERAARKAAKEAKKIASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLEL----IREIEKVRKRREEREKEQEEMERLRA 215
            R AES  E+A RK   +    A+ FGYT+  NPFGD+NL +QFVW  K++++ +            +K +++ + R ++    I EIEKVRKRR++ E E+EEM+RL+A
Sbjct:  101 RAAESEHEKAERKRKAKMDGTAAHFGYTNDINPFGDSNLTEQFVWGKKKEKEGT-----------ADKLLTKRDMR-DMQKKNIDEIEKVRKRRDDAEAEREEMDRLKA 197          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|302795544|ref|XP_002979535.1| (hypothetical protein SELMODRAFT_177683 [Selaginella moellendorffii] >gi|300152783|gb|EFJ19424.1| hypothetical protein SELMODRAFT_177683 [Selaginella moellendorffii])

HSP 1 Score: 67.3958 bits (163), Expect = 1.362e-9
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0
Query:  112 LAESAEERAARKAAKEAKKI--ASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKE----QEEMERL 213
            L E   ++A RKAA+ AKK+   ++ GY++ SNPFGD+NL ++FVW+ K ++  + K        V  +K+ + ER    +REIEKV+KRREER  E    +EEM  L
Sbjct:  100 LNEYLVKKAQRKAARVAKKLKTQTVSGYSNDSNPFGDSNLTEKFVWRKKIERDVANKKMDLKDLSVKAEKLRQKER----MREIEKVKKRREERAIEKAQHEEEMAML 203          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|302791956|ref|XP_002977744.1| (hypothetical protein SELMODRAFT_107633 [Selaginella moellendorffii] >gi|300154447|gb|EFJ21082.1| hypothetical protein SELMODRAFT_107633 [Selaginella moellendorffii])

HSP 1 Score: 67.3958 bits (163), Expect = 1.388e-9
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 0
Query:  112 LAESAEERAARKAAKEAKKI--ASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKE----QEEMERL 213
            L E   ++A RKAA+ AKK+   ++ GY++ SNPFGD+NL ++FVW+ K ++  + K        V  +K+ + ER    +REIEKV+KRREER  E    +EEM  L
Sbjct:  100 LNEYLVKKAQRKAARVAKKLKTQTVSGYSNDSNPFGDSNLTEKFVWRKKIERDVANKKMDLKDLSVKAEKLRQKER----MREIEKVKKRREERAIEKAQHEEEMAML 203          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|920682472|gb|KOM29244.1| (hypothetical protein LR48_Vigan641s003200 [Vigna angularis])

HSP 1 Score: 67.3958 bits (163), Expect = 1.461e-9
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 0
Query:  112 LAESAEERAARKAAKEAKKI--ASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKE----QEEMERL 213
            +A+   +RA  KA K AKK+  +++ GY++ SNPFGD+NL+++FVW+ K ++  S+    +      EKK     R++E + EIEKV+KRREER  E    +EEM  L
Sbjct:   98 IAQYMTKRAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIDTFSVKAEKK-----RQIERMAEIEKVKKRREERALEKARHEEEMALL 200          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|950953541|ref|XP_014496201.1| (PREDICTED: cactin-like isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 67.3958 bits (163), Expect = 1.755e-9
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 0
Query:  112 LAESAEERAARKAAKEAKKI--ASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKE----QEEMERL 213
            +A+   +RA  KA K AKK+  +++ GY++ SNPFGD+NL+++FVW+ K ++  S+    +      EKK     R++E + EIEKV+KRREER  E    +EEM  L
Sbjct:   61 IAQYMTKRAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIDTFSVKAEKK-----RQIERMAEIEKVKKRREERALEKARHEEEMALL 163          
BLAST of EWM24508.1 vs. NCBI_GenBank
Match: gi|1063520852|ref|XP_017981409.1| (PREDICTED: LOW QUALITY PROTEIN: cactin [Theobroma cacao])

HSP 1 Score: 66.6254 bits (161), Expect = 2.498e-9
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 0
Query:  112 LAESAEERAARKAAKEAKKI--ASMFGYTSHSNPFGDANLHQQFVWKAKEQQQASKKGGREGGQEVGEKKVSEAERRLELIREIEKVRKRREEREKE----QEEMERL 213
            +AE   ++A +KA + AKK+   ++ GY++ SNPFGD+NL+++FVW+ K +Q  ++    +      EKK     R+ E + EIEKV+KRREER  E    +EEM  L
Sbjct:   94 VAEYLAKKAQKKALRAAKKLKAQTVLGYSNDSNPFGDSNLNEKFVWREKIEQDVAQGVPLDTFSVKAEKK-----RQKERMAEIEKVKKRREERALEKAQHEEEMALL 196          
The following BLAST results are available for this feature:
BLAST of EWM24508.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106007|gb|EWM24508.1|5.235e-147100.00hypothetical protein Naga_100954g1, partial [Nanno... [more]
gi|1210520126|dbj|GAX21009.1|2.444e-1547.06hypothetical protein FisN_1Lu323 [Fistulifera sola... [more]
gi|1210530499|dbj|GAX10884.1|4.775e-1342.16hypothetical protein FisN_UnNu012 [Fistulifera sol... [more]
gi|397614358|gb|EJK62750.1|2.464e-1148.15hypothetical protein THAOC_16625 [Thalassiosira oc... [more]
gi|298706461|emb|CBJ29448.1|1.814e-1041.28conserved unknown protein [Ectocarpus siliculosus][more]
gi|302795544|ref|XP_002979535.1|1.362e-942.59hypothetical protein SELMODRAFT_177683 [Selaginell... [more]
gi|302791956|ref|XP_002977744.1|1.388e-942.59hypothetical protein SELMODRAFT_107633 [Selaginell... [more]
gi|920682472|gb|KOM29244.1|1.461e-941.67hypothetical protein LR48_Vigan641s003200 [Vigna a... [more]
gi|950953541|ref|XP_014496201.1|1.755e-941.67PREDICTED: cactin-like isoform X1 [Vigna radiata v... [more]
gi|1063520852|ref|XP_017981409.1|2.498e-940.74PREDICTED: LOW QUALITY PROTEIN: cactin [Theobroma ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6179rna6179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications