rna6178, rna6178 (mRNA) Nannochloropsis gaditana

Overview
Namerna6178
Unique Namerna6178
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1518
Alignment locationCM002467.1:781211..782368 -

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100560g4.2584.mrna
Orig protein idgnl|cribi|Naga_100560g4.2584
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:781211..782368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100560g4gene5968Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6178rna6178-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24511.1cds6163Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6178 ID=rna6178|Name=rna6178|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp
ATGGCCTCTGGACGGTGGCGAGTGCCTGGTGGGAGAAATTTGGCGAAGAT
CCCCAATGTCCTTTACCGCGCCTCCACGAAAACAAATGCTTTGCCCCGCA
AAATTGCCGTCACGAGAATGCTGGCGTTTTGCTCCTGCTTGGCTGCGTTG
GGATGGGTATGGTCCAGTCTGCAGCTGAACAAAAATTATAGATTGGATCG
GATCCCTCTCTCCTCGGCGGCGCTGCGAGACCTGCTGTCCATGGAGATGC
AGGCGTCGTATAATCTTGTCGTTCCCCACGATTCAACCTCCCCGTTTTCT
CTACCGATCATTCTCTCCTCCTCGTCCCATTCTCCCACCACCACCACCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCACCCCTCCCTTGTCTCGAGAGGAATGCTCTCTCAGATACGGG
GCCCGCCGCTTTTTGGATCCCAACCCAAACTTTACCCCTGCCGTCCTTTA
CAGTTACCCTGGGAGCGGCAATACCTTCACAAGGCTCTTGATTGACCATG
CGACAGGTGTCTATACCGGAGCCATCTTAGGAGTCAACGACCCACGCTTG
GCAGAAGCCTTGCCTGGCCAATCCCATTGTGACTCGAGCGTCATCGCCAT
CAAGGCACACCCCAAGCAGTTCCGTCCATTGAAACTCTTGGCCGGGCAGT
TACCCGACAACTGCCAGGCGGAAGGCGGGCTTCGACAGGGGTTCGAGCGC
TTTATATTGCTGAGCCGAGACCCGTACGCGGCGATTTGGAGCGAGTACCA
GCGACGGTTGAATAACGGCAGTCACCACCAGGCTGCGGACCCGGCGGCCT
TTGATCCTGAGCATTTTGGTCGTGTGGCCATGGTCTTTGCCCAGGAATAC
GTTACCACCCTCGAAAATTTTGAATTTTTGAAAACAAAATTACCGCGCCA
CGACATACTCTCGGTCAAATACGAGGATCTGACCACCACGGATGTGCTGA
CGCGGGAGGCGGTCCTGCATGACATCGTCACCTTCTTGGGGGCGACTAAA
GAGGCAAAAGATAGCCGGAGGTGCTCCTGTGCCTTCACCTTAGCAGACCG
GCCCGACACCCGAAGGACAAGGGAGGAAGACAAGGAGGTAAGGAAGGCTG
TTACGAGGGAAGAGGCGTATACACCGGAGCTGGCGTGTGATATGTGGGAG
CTGCTGGAGGAGGGAGGGGCGGGGAGGCTGGGCTACAGTCCCCCCCCGGG
GGTCACCTGCGTGGAACGGAAGGAGGAGGGGGAGGGGGAAGAAATGGCTG
TGAGGAAGGAAAGTTGGGAGAGAGGAAGGAGGAAGGCAAAAGAAGGAGGG
GCACGGGCAGGGGAGAAGGAAGGCAGAAGGAGACGGAGGGAAGACGCGGA
GGAGGAAGGGAAGGAGGGAAAAGGGCCGATAGGAGGGAGGGAAGGAGGGC
GGGAGGGGGACGAGGGAGGCGAGGGGAAAGAGGGGCGCATAAGAATCCGG
GTGTCCCGAATGCAATAG
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protein sequence of rna6178

>rna6178-protein ID=rna6178-protein|Name=rna6178|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MWRRLRYDDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAE
GEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQ
GYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILN
KEWEKSHKRGFKCLFERGILSLYFNFKRARYRR
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mRNA from alignment at CM002467.1:781211..782368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6178 ID=rna6178|Name=rna6178|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp|location=Sequence derived from alignment at CM002467.1:781211..782368- (Nannochloropsis gaditana)
ATGTGGCGCCGGCTACGTACGGGGTCCACTCCATACCCTCCTTCACCGTC
CCTGACCCTGCCCCTCCCTCGCTCCCTCCCTCCCTCCCTTCCTTCCTCCT
TTCCTCCCTCCCTTCCTCCCTCCCTTCTCCCCTCCCTCGCAGGCTACGAC
GATTCTACCGCCGCGCTCGCCCTCCTGTCCGCCGAGAGGGGCCGGGGGCT
GGCAGCGGACGAAGCCACGCTGGGCAAGCAGGACGAAGTGCTTCTCGGGG
AGGACGGGGGGGAGGGAGGGGCGGAGGGCGAGGTGGTGGGGAGGACGTAT
TGGTGGCAGGACAAGTACCGACCTCGGAAGCCACGGTACTTCAACCGGGT
CAAGACAGGTCGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGAGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACAGGAGGGGAAAGAGAA
CCGCTAAGGTTTTCCAGAGGATTCTTGGCGCTGCCACTCGGGATTTTGAT
TCCTGGTGACTGCCCTCTTTCCGGTACCTTACCCTCCTCTCTTATTTCCT
TCTCCCACCCCCTAGGCTGGGACTGGAACATGTACAACCGGACCCACTAC
GACCACGACAACCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGT
CTTTTATCCTGACCTGATCGACAAGACGAAGGTCGGTTCGGGGGGGAGGT
GGACAAGGGGAAGGCAGGGGGGAGGGGGAGGCCAGGAGGCGTCTGCCTGG
CTTCATCAATCTTGTTTCGTTTCCTTTCCGTATCCTGTCAATTCAGGCCC
CGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATAATTCGC
TTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCTGAATAA
GGAGGTAGGCGCAGAGCCTGAAACGGAACCGTGATGAGTCACGGGACACG
TTGCTTGGTCTGAAATGTTTGCGATGAGCCCATCAAGTATTGATGTTCTG
CTCACATTTGATGTATCTTTCTTTCCCTTGCCCCTCCCATCATATATTTT
CCTTACTGTCAGTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTT
TGAACGGGGAATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACC
GTCGTTAA
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Coding sequence (CDS) from alignment at CM002467.1:781211..782368-

>rna6178 ID=rna6178|Name=rna6178|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002467.1:781211..782368- (Nannochloropsis gaditana)
TGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAACGGGGAAT
CCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCGTTAAGCCC
CGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATAATTCGC
TTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCTGAATAA
GGAGGCTGGGACTGGAACATGTACAACCGGACCCACTACGACCACGACAA
CCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGTCTTTTATCCTG
ACCTGATCGACAAGACGAAGGCTACGACGATTCTACCGCCGCGCTCGCCC
TCCTGTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAGCCACGCTG
GGCAAGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAGGGAGGGGC
GGAGGGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAAGTACCGAC
CTCGGAAGCCACGGTACTTCAACCGGGTCAAGACAGATGTGGCGCCGGCT
ACTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAACGGGGA
ATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCGTTAAGC
CCCGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATAATTC
GCTTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCTGAAT
AAGGAGGCTGGGACTGGAACATGTACAACCGGACCCACTACGACCACGAC
AACCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGTCTTTTATCC
TGACCTGATCGACAAGACGAAGGCTACGACGATTCTACCGCCGCGCTCGC
CCTCCTGTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAGCCACGC
TGGGCAAGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAGGGAGGG
GCGGAGGGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAAGTACCG
ACCTCGGAAGCCACGGTACTTCAACCGGGTCAAGACAGATGTGGCGCCGG
CTACTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAACGGG
GAATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCGTTAA
GCCCCGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATAAT
TCGCTTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCTGA
ATAAGGAGGCTGGGACTGGAACATGTACAACCGGACCCACTACGACCACG
ACAACCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGTCTTTTAT
CCTGACCTGATCGACAAGACGAAGGCTACGACGATTCTACCGCCGCGCTC
GCCCTCCTGTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAGCCAC
GCTGGGCAAGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAGGGAG
GGGCGGAGGGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAAGTAC
CGACCTCGGAAGCCACGGTACTTCAACCGGGTCAAGACAGATGTGGCGCC
GGCTACTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAACG
GGGAATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCGTT
AAGCCCCGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGATA
ATTCGCTTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATTCT
GAATAAGGAGGCTGGGACTGGAACATGTACAACCGGACCCACTACGACCA
CGACAACCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGTCTTTT
ATCCTGACCTGATCGACAAGACGAAGGCTACGACGATTCTACCGCCGCGC
TCGCCCTCCTGTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAGCC
ACGCTGGGCAAGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAGGG
AGGGGCGGAGGGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAAGT
ACCGACCTCGGAAGCCACGGTACTTCAACCGGGTCAAGACAGATGTGGCG
CCGGCTACTGGGAGAAGAGCCACAAGCGAGGATTCAAGTGTCTTTTTGAA
CGGGGAATCCTCTCTCTGTACTTTAATTTCAAGAGAGCTCGCTACCGTCG
TTAAGCCCCGACCTTTTTTATGGAGAGGTGCGATAATCCCGAATTTACGA
TAATTCGCTTTCACGCCGGGCCGCCCTATGAGGACGTGGCGTTTAAAATT
CTGAATAAGGAGGCTGGGACTGGAACATGTACAACCGGACCCACTACGAC
CACGACAACCCCCCGCCCAAGACCGTCCAAGGTTACAAATTTAACGTCTT
TTATCCTGACCTGATCGACAAGACGAAGGCTACGACGATTCTACCGCCGC
GCTCGCCCTCCTGTCCGCCGAGAGGGGCCGGGGGCTGGCAGCGGACGAAG
CCACGCTGGGCAAGCAGGACGAAGTGCTTCTCGGGGAGGACGGGGGGGAG
GGAGGGGCGGAGGGCGAGGTGGTGGGGAGGACGTATTGGTGGCAGGACAA
GTACCGACCTCGGAAGCCACGGTACTTCAACCGGGTCAAGACAGATGTGG
CGCCGGCTAC
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Synonyms
Publications