EWM24511.1, cds6163 (CDS) Nannochloropsis gaditana

Overview
NameEWM24511.1
Unique Namecds6163
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:782353..782368 -
Alignment locationCM002467.1:782011..782226 -
Alignment locationCM002467.1:781688..781803 -
Alignment locationCM002467.1:781465..781572 -
Alignment locationCM002467.1:781211..781306 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24511.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100560g4.2584.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:782353..782368 -
CM002467.1supercontigCM002467.1:782011..782226 -
CM002467.1supercontigCM002467.1:781688..781803 -
CM002467.1supercontigCM002467.1:781465..781572 -
CM002467.1supercontigCM002467.1:781211..781306 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR019134Cactin_C
Homology
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|585106011|gb|EWM24511.1| (uncharacterized protein Naga_100560g4 [Nannochloropsis gaditana])

HSP 1 Score: 381.719 bits (979), Expect = 3.076e-134
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0
Query:    1 MWRRLRYDDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
            MWRRLRYDDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR
Sbjct:    1 MWRRLRYDDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|298706461|emb|CBJ29448.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 243.047 bits (619), Expect = 4.524e-74
Identity = 107/176 (60.80%), Postives = 133/176 (75.57%), Query Frame = 0
Query:    8 DDSTAALALLSAERGRGLAADEATLGKQDEVLLGEDGGEGGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
            D S  A+ +L+ E+ +G+   E  +   DEV +G             G+TYWW DK+RPRKPRYFNRVKTG+DWN YN+THYDHDNPPPKTVQGYKFNVFYPDLID+   P +F+E+ D+P F I+RFHAGPPYED+AFKI+N+EWE   KRG++C+FERG+LSLYFNFK   YR+
Sbjct:  460 DSSALAMGMLANEKSKGMGDQEEGMDLADEVDMG-------------GKTYWWHDKFRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDREDTPKYFLEKADHPGFAILRFHAGPPYEDIAFKIINREWEFGRKRGYRCVFERGVLSLYFNFKSLWYRK 622          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|470503587|ref|XP_004347748.1| (cactin, putative [Acanthamoeba castellanii str. Neff] >gi|440800887|gb|ELR21916.1| cactin, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 235.343 bits (599), Expect = 2.702e-71
Identity = 101/136 (74.26%), Postives = 119/136 (87.50%), Query Frame = 0
Query:   48 GAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMERCDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
              E  + G+ YWWQDKYRPRKPRY+NRV TG++WN YN++HYDHDNPPPKTVQGYKFNVFYPDLIDK KAP +F+E  D+P+  IIRFHAGPPYEDVAFK++N+EWE SHKRGFKC+F+RGI+ L+FNFKR RYRR
Sbjct:  472 STEVALEGKKYWWQDKYRPRKPRYYNRVHTGYEWNKYNQSHYDHDNPPPKTVQGYKFNVFYPDLIDKQKAPRYFIEPSDSPDTCIIRFHAGPPYEDVAFKVVNREWEYSHKRGFKCVFDRGIMHLWFNFKRYRYRR 607          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|641845410|gb|KDO64298.1| (hypothetical protein CISIN_1g0055712mg, partial [Citrus sinensis])

HSP 1 Score: 231.106 bits (588), Expect = 1.041e-70
Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 0
Query:   47 GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
             GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DKTKAPT+ +E+   N E  IIRFHAGPPYED+AFKI+NKEWE SHK+GFKC FERGIL +YFNFKR RYRR
Sbjct:  354 SGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 491          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|641845409|gb|KDO64297.1| (hypothetical protein CISIN_1g0055712mg [Citrus sinensis])

HSP 1 Score: 230.72 bits (587), Expect = 1.505e-70
Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 0
Query:   47 GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
             GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DKTKAPT+ +E+   N E  IIRFHAGPPYED+AFKI+NKEWE SHK+GFKC FERGIL +YFNFKR RYRR
Sbjct:  363 SGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 500          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|641845411|gb|KDO64299.1| (hypothetical protein CISIN_1g0055712mg, partial [Citrus sinensis] >gi|641845412|gb|KDO64300.1| hypothetical protein CISIN_1g0055712mg, partial [Citrus sinensis] >gi|641845413|gb|KDO64301.1| hypothetical protein CISIN_1g0055712mg, partial [Citrus sinensis])

HSP 1 Score: 230.72 bits (587), Expect = 1.597e-70
Identity = 102/138 (73.91%), Postives = 117/138 (84.78%), Query Frame = 0
Query:   47 GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
             GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DKTKAPT+ +E+   N E  IIRFHAGPPYED+AFKI+NKEWE SHK+GFKC FERGIL +YFNFKR RYRR
Sbjct:  361 SGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 498          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|902221947|gb|KNA19049.1| (hypothetical protein SOVF_065250 isoform B [Spinacia oleracea])

HSP 1 Score: 234.572 bits (597), Expect = 1.701e-70
Identity = 109/182 (59.89%), Postives = 137/182 (75.27%), Query Frame = 0
Query:   14 LALLSAERGRGLAADEATLGKQDEV------LLG--EDGGE---GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
            LA++  +R +   A +     +D++      ++G  EDG      GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DK KAPT+F+E+  D+ E  IIRFHAGPPYED+AF+I+NKEWE SHK+G+KC FERGIL +YFNFKR RYRR
Sbjct:  478 LAVIEEQRAKEAMASKPRAQPEDDLEVRARKVMGVVEDGDAVFGAGAEINLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTYFIEKDGDSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGYKCTFERGILHVYFNFKRYRYRR 659          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|947119554|gb|KRH67803.1| (hypothetical protein GLYMA_03G188600 [Glycine max])

HSP 1 Score: 231.106 bits (588), Expect = 1.861e-70
Identity = 104/146 (71.23%), Postives = 120/146 (82.19%), Query Frame = 0
Query:   42 EDGGE---GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
            EDG      GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DKTKAPT+ +E+   N E  IIRFHAGPPYED+AF+I+NKEWE SHK+GFKC FERGIL +YFNFKR RYRR
Sbjct:  368 EDGDSVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCAFERGILHVYFNFKRHRYRR 513          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|902221946|gb|KNA19048.1| (hypothetical protein SOVF_065250 isoform A [Spinacia oleracea])

HSP 1 Score: 234.187 bits (596), Expect = 2.368e-70
Identity = 109/182 (59.89%), Postives = 137/182 (75.27%), Query Frame = 0
Query:   14 LALLSAERGRGLAADEATLGKQDEV------LLG--EDGGE---GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
            LA++  +R +   A +     +D++      ++G  EDG      GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DK KAPT+F+E+  D+ E  IIRFHAGPPYED+AF+I+NKEWE SHK+G+KC FERGIL +YFNFKR RYRR
Sbjct:  481 LAVIEEQRAKEAMASKPRAQPEDDLEVRARKVMGVVEDGDAVFGAGAEINLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTYFIEKDGDSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGYKCTFERGILHVYFNFKRYRYRR 662          
BLAST of EWM24511.1 vs. NCBI_GenBank
Match: gi|566175827|ref|XP_006381345.1| (hypothetical protein POPTR_0006s12020g [Populus trichocarpa] >gi|550336047|gb|ERP59142.1| hypothetical protein POPTR_0006s12020g [Populus trichocarpa])

HSP 1 Score: 233.802 bits (595), Expect = 3.418e-70
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 0
Query:   47 GGAEGEVVGRTYWWQDKYRPRKPRYFNRVKTGWDWNMYNRTHYDHDNPPPKTVQGYKFNVFYPDLIDKTKAPTFFMER-CDNPEFTIIRFHAGPPYEDVAFKILNKEWEKSHKRGFKCLFERGILSLYFNFKRARYRR 183
             GAE  +  + YWW DKYRPRKP+YFNRV TG++WN YN+THYDHDNPPPK VQGYKFN+FYPDL+DK KAPTF +E+  DN E  IIRFHAGPPYED+AFKI+NKEWE SHK+GFKC FERGIL +YFNFKR RYRR
Sbjct:  526 SGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPTFTIEKDGDNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 663          
The following BLAST results are available for this feature:
BLAST of EWM24511.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106011|gb|EWM24511.1|3.076e-134100.00uncharacterized protein Naga_100560g4 [Nannochloro... [more]
gi|298706461|emb|CBJ29448.1|4.524e-7460.80conserved unknown protein [Ectocarpus siliculosus][more]
gi|470503587|ref|XP_004347748.1|2.702e-7174.26cactin, putative [Acanthamoeba castellanii str. Ne... [more]
gi|641845410|gb|KDO64298.1|1.041e-7073.91hypothetical protein CISIN_1g0055712mg, partial [C... [more]
gi|641845409|gb|KDO64297.1|1.505e-7073.91hypothetical protein CISIN_1g0055712mg [Citrus sin... [more]
gi|641845411|gb|KDO64299.1|1.597e-7073.91hypothetical protein CISIN_1g0055712mg, partial [C... [more]
gi|902221947|gb|KNA19049.1|1.701e-7059.89hypothetical protein SOVF_065250 isoform B [Spinac... [more]
gi|947119554|gb|KRH67803.1|1.861e-7071.23hypothetical protein GLYMA_03G188600 [Glycine max][more]
gi|902221946|gb|KNA19048.1|2.368e-7059.89hypothetical protein SOVF_065250 isoform A [Spinac... [more]
gi|566175827|ref|XP_006381345.1|3.418e-7074.64hypothetical protein POPTR_0006s12020g [Populus tr... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6178rna6178Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications