rna6176, rna6176 (mRNA) Nannochloropsis gaditana

Overview
Namerna6176
Unique Namerna6176
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1193
Alignment locationCM002467.1:776676..778046 +

Link to JBrowse

Properties
Property NameValue
Productpeptidase m48 ste24p
Orig transcript idgnl|cribi|Naga_100560g2.2586.mrna
Orig protein idgnl|cribi|Naga_100560g2.2586
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:776676..778046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100560g2gene5966Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6176rna6176-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24513.1cds6161Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6176 ID=rna6176|Name=rna6176|organism=Nannochloropsis gaditana|type=mRNA|length=1193bp
TAATTTGCTGCCGGACAGCACTTTCTCTATGAAGAGGTTGACACAACAGC
GCTTGCGGGATATGCACAGAAACTGTGAGCACCACCGTGCCCGCCTAGTG
CAGTTCGTTGTCGCTGACTGATTGCTGTCCTGTGATTGCCAACAAACCAC
ACCCAGAGTGATGGCAGCCTCCTCAGCGGATTCTGCTTCCCCATCACCAG
AGACTACCCCGGAACAATGGGATCGAATCAAGGCTTTCCTCCGCGCGCTT
CCGCCCTCGGACTCATTGTCGCGGACAGCACAGAGTCGGGAACGCGAAAG
GGAGCTGGTGGCCACTTTCCTTTCCCAGCACGTTTCCCTCATACAGCTTT
TCCTCGCCCTGGACCAGGCGACACGGCGTGCGGATAAGGATCGGCTCCAT
CAAGTAGCGCGGGCGGTGAATCGTTGCTTCACAAGTGCGTTAGGCATGGA
TTTACTCACAGACCCGCTGGTGCTGCCCCATTTAGTCCTGGGGATGCGGC
ACCCCGAGGAGGAAGTGAGGCGGTTGACGACGAAAATTCTGAGTGAGAAT
TTGCAGCTGCGTGAGGGGGAAGGAGGCGGGGGCGAAGGGGAGGAAAGGGA
AGAAAAGCGACAAGCTCTGATCCGACGGCTCTCTGTGGGTACAGGAGATG
CAGAAGACGTCGTTTCCTCCCTCTCCGACCCTGCGCTTGACCCCCCATCG
GCCTCCCCCACCTCCAACTTTCCCATGTCCGTCGCCGCCGCGTTGGCTCA
AGGTATAGCGGACCCTAGCATTGCGGTCGCTCAGTCCTCGGCGGACGCCC
TCCTCTCCATGATGCGCACCTGTGCCTTTCCCTCCGCCCCCACCGCCCAC
ATTGCCCCCCTCCTTGCTCACATCCATCGCTTTGCCAGCGTAAACCCCGA
CGTGCTACGGAACCAAGTGCTTCGCCTTCGTTACGCCGATGTGATCGCGC
GCGCGTTCGCCCTGGCGGACGTGCAGCCCTCCCTTCATGCCTCCCTCGCC
TCACCGTCCACGGGACCCGCCCTCGCCCTCCTCTTCGACCTGGCGCGGGG
TGCAAGCGAGGGAGGGACGGCGGACGAGCTCATTCGTTTCAGTGCCCTCG
AGCTCCTGGAGGCAGGGTCAGGGACAGCTCGGGGCGCACGGAGCATGTCG
GAGGCGGGGATTGTGAGGCTGTTGCTGGGGTTGGCGCGGGGGA
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protein sequence of rna6176

>rna6176-protein ID=rna6176-protein|Name=rna6176|organism=Nannochloropsis gaditana|type=polypeptide|length=193bp
MALCSVCMARPHRVRHAPPPTEDVMNAAAMPGGKVVIFTGLKKCVHTEEE
LAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLLALLGLPVNELTLLLGD
LTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKG
VTVPGFLSTHPAFPERIALLKREVEKVRPLYEASKEAAFFSFT
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mRNA from alignment at CM002467.1:776676..778046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6176 ID=rna6176|Name=rna6176|organism=Nannochloropsis gaditana|type=mRNA|length=1371bp|location=Sequence derived from alignment at CM002467.1:776676..778046+ (Nannochloropsis gaditana)
ATGGCATTATGTAGCGTGTGCATGGCAAGACCTCACCGCGTGCGgcatgc
cccccctcctacaGAGGACGTGATGAATGCGGCCGCCAtgccgggaggga
aagtTGTCATATTCACCGGGCTCAAGGTACAAGGGTGGGACAGGAAAGGG
GTAGACacaggaaaatggaaagcaGGGAGCCTGGCTAGAAAGTGGCGAGC
CGCTCGTGTTTTTATATATACCTGTCCCGGGGTCTCcctctgtcctttct
ccctcccgccctcccttcctcccgccctttcgtCTTTTTGTTCCCGCCCT
catcgtccccgcccgccctccctcttaaTACGGTGCATTCaatccaccct
tcctccgtctctccacggtacctccgggtattcttCTTGGTCCAGAAATG
CGTGCACACAGAGGAGGAACTGGCGGCGGTTATCGGACACGAAATCTCCC
ACGTGCTCCTCCGTCATTCTGCCGAACAGATGGGCTCCACCGCCTTGATG
AAttatttcttcttccttctcgcacTCCTGGGCCTTCCTGTGAACGAATT
GACGCTCTTGCTgggtggggcgggagggagggcgggaggcagggcggacg
ggagggcgggaggcagggcgagCGCAAGGCTTGCATCTTCCATCAAGGTG
GATGCGATGACGCCGGTCGTTCTCGCTCAACAGGAAAGGTTGCCGAAGGG
CATTGGAGGATAGCCGTAAAATACCGACGGattccttcccattcccctcc
cccaaccccccgccgtccctccccctctcgccctgcTCCAGGCGACTTAA
CATGGCAGCGGCCCAACAGCCGTTTGCACGAGAAGGAAGCCGACGCCGTT
GGGGTATTGTTGTGCGCCAAAGCCGGGTATAATCCCGCGGCGGCCGTGCG
CGTTTTTGAGCGGATGGCCGGCGAGGAGTTGAAACGGAGCAAAGGCGTGA
CGGTTCCAGGGTTCTTGAGCACGGtgcgatgggagggaagcggtCAGGGC
CGGAAGGGATGTgtggggaaggtgggagggtgggagggggggagggaggg
gcgacaaGGGTGGGTATCCCTTCGATCGAGGGGAGCGACTCCGGATTTGG
CCGAtgaagaggggcggggctaTAGCGGGCATGATGACTTCCTTGATGTT
TTGGTTCCCTGTTTCTTTGTCCCCGGGCTCATCTATTCACAACCAcgtcc
cttctcctcccacagcaccctgccttccctgAACGGATTGCCTTGTTGAA
GCGGGAAGTCGAGAAGGTCCGTCCCCTGTACgaggcgagcaaggaggctg
ctttcttctccttcacgtAGGAGGCTTTAATTTAAATTTCttcagaaggg
aggggagtagtgtgggggaag
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Coding sequence (CDS) from alignment at CM002467.1:776676..778046+

>rna6176 ID=rna6176|Name=rna6176|organism=Nannochloropsis gaditana|type=CDS|length=2328bp|location=Sequence derived from alignment at CM002467.1:776676..778046+ (Nannochloropsis gaditana)
ATGGCATTATGTAGCGTGTGCATGGCAAGACCTCACCGCGTGCGgcatgc
cccccctcctacaGAGGACGTGATGAATGCGGCCGCCAtgccgggaggga
aagtTGTCATATTCACCGGGCTCAAGAAATGCGTGCACACAGAGGAGGAA
CTGGCGGCGGTTATCGGACACGAAATCTCCCACGTGCTCCTCCGTCATTC
TGCCGAACAGATGGGCTCCACCGCCTTGATGAAttatttcttcttccttc
tcgcacTCCTGGGCCTTCCTGTGAACGAATTGACGCTCTTGCTggGCGAC
TTAACATGGCAGCGGCCCAACAGCCGTTTGCACGAGAAGGAAGCCGACGC
CGTTGGGGTATTGTTGTGCGCCAAAGCCGGGTATAATCCCGCGGCGGCCG
TGCGCGTTTTTGAGCGGATGGCCGGCGAGGAGTTGAAACGGAGCAAAGGC
GTGACGGTTCCAGGGTTCTTGAGCACGcaccctgccttccctgAACGGAT
TGCCTTGTTGAAGCGGGAAGTCGAGAAGGTCCGTCCCCTGTACgaggcga
gcaaggaggctgctttcttctccttcacgtAGATGGCATTATGTAGCGTG
TGCATGGCAAGACCTCACCGCGTGCGgcatgccccccctcctacaGAGGA
CGTGATGAATGCGGCCGCCAtgccgggagggaaagtTGTCATATTCACCG
GGCTCAAGAAATGCGTGCACACAGAGGAGGAACTGGCGGCGGTTATCGGA
CACGAAATCTCCCACGTGCTCCTCCGTCATTCTGCCGAACAGATGGGCTC
CACCGCCTTGATGAAttatttcttcttccttctcgcacTCCTGGGCCTTC
CTGTGAACGAATTGACGCTCTTGCTggGCGACTTAACATGGCAGCGGCCC
AACAGCCGTTTGCACGAGAAGGAAGCCGACGCCGTTGGGGTATTGTTGTG
CGCCAAAGCCGGGTATAATCCCGCGGCGGCCGTGCGCGTTTTTGAGCGGA
TGGCCGGCGAGGAGTTGAAACGGAGCAAAGGCGTGACGGTTCCAGGGTTC
TTGAGCACGcaccctgccttccctgAACGGATTGCCTTGTTGAAGCGGGA
AGTCGAGAAGGTCCGTCCCCTGTACgaggcgagcaaggaggctgctttct
tctccttcacgtAGATGGCATTATGTAGCGTGTGCATGGCAAGACCTCAC
CGCGTGCGgcatgccccccctcctacaGAGGACGTGATGAATGCGGCCGC
CAtgccgggagggaaagtTGTCATATTCACCGGGCTCAAGAAATGCGTGC
ACACAGAGGAGGAACTGGCGGCGGTTATCGGACACGAAATCTCCCACGTG
CTCCTCCGTCATTCTGCCGAACAGATGGGCTCCACCGCCTTGATGAAtta
tttcttcttccttctcgcacTCCTGGGCCTTCCTGTGAACGAATTGACGC
TCTTGCTggGCGACTTAACATGGCAGCGGCCCAACAGCCGTTTGCACGAG
AAGGAAGCCGACGCCGTTGGGGTATTGTTGTGCGCCAAAGCCGGGTATAA
TCCCGCGGCGGCCGTGCGCGTTTTTGAGCGGATGGCCGGCGAGGAGTTGA
AACGGAGCAAAGGCGTGACGGTTCCAGGGTTCTTGAGCACGcaccctgcc
ttccctgAACGGATTGCCTTGTTGAAGCGGGAAGTCGAGAAGGTCCGTCC
CCTGTACgaggcgagcaaggaggctgctttcttctccttcacgtAGATGG
CATTATGTAGCGTGTGCATGGCAAGACCTCACCGCGTGCGgcatgccccc
cctcctacaGAGGACGTGATGAATGCGGCCGCCAtgccgggagggaaagt
TGTCATATTCACCGGGCTCAAGAAATGCGTGCACACAGAGGAGGAACTGG
CGGCGGTTATCGGACACGAAATCTCCCACGTGCTCCTCCGTCATTCTGCC
GAACAGATGGGCTCCACCGCCTTGATGAAttatttcttcttccttctcgc
acTCCTGGGCCTTCCTGTGAACGAATTGACGCTCTTGCTggGCGACTTAA
CATGGCAGCGGCCCAACAGCCGTTTGCACGAGAAGGAAGCCGACGCCGTT
GGGGTATTGTTGTGCGCCAAAGCCGGGTATAATCCCGCGGCGGCCGTGCG
CGTTTTTGAGCGGATGGCCGGCGAGGAGTTGAAACGGAGCAAAGGCGTGA
CGGTTCCAGGGTTCTTGAGCACGcaccctgccttccctgAACGGATTGCC
TTGTTGAAGCGGGAAGTCGAGAAGGTCCGTCCCCTGTACgaggcgagcaa
ggaggctgctttcttctccttcacgtAG
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Synonyms
Publications