EWM24513.1, cds6161 (CDS) Nannochloropsis gaditana

Overview
NameEWM24513.1
Unique Namecds6161
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:776676..776801 +
Alignment locationCM002467.1:777071..777239 +
Alignment locationCM002467.1:777467..777648 +
Alignment locationCM002467.1:777891..777995 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24513.1
Productpeptidase m48 ste24p
Orig transcript idgnl|cribi|Naga_100560g2.2586.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:776676..776801 +
CM002467.1supercontigCM002467.1:777071..777239 +
CM002467.1supercontigCM002467.1:777467..777648 +
CM002467.1supercontigCM002467.1:777891..777995 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001915Peptidase_M48
Homology
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|585106013|gb|EWM24513.1| (peptidase m48 ste24p [Nannochloropsis gaditana])

HSP 1 Score: 393.66 bits (1010), Expect = 1.110e-138
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MALCSVCMARPHRVRHAPPPTEDVMNAAAMPGGKVVIFTGLKKCVHTEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLLALLGLPVNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYEASKEAAFFSFT 193
            MALCSVCMARPHRVRHAPPPTEDVMNAAAMPGGKVVIFTGLKKCVHTEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLLALLGLPVNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYEASKEAAFFSFT
Sbjct:    1 MALCSVCMARPHRVRHAPPPTEDVMNAAAMPGGKVVIFTGLKKCVHTEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLLALLGLPVNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYEASKEAAFFSFT 193          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|497079688|ref|WP_009462160.1| (MULTISPECIES: M48-family peptidase [Alcaligenes] >gi|422886324|gb|EKU28748.1| M48-family peptidase [Alcaligenes sp. HPC1271] >gi|542104947|gb|ERI34113.1| peptidase M48 [Alcaligenes sp. EGD-AK7])

HSP 1 Score: 138.272 bits (347), Expect = 7.272e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVSLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|1209945653|ref|WP_088450165.1| (peptidase M48 [Alcaligenes faecalis] >gi|1209480705|gb|ASC89039.1| peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 138.272 bits (347), Expect = 7.591e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|982009509|ref|WP_060185170.1| (peptidase M48 [Alcaligenes faecalis] >gi|979539681|gb|KVX06557.1| peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 138.272 bits (347), Expect = 7.925e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|651371118|ref|WP_026483372.1| (peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 138.272 bits (347), Expect = 7.925e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|1027758358|ref|WP_063690485.1| (peptidase M48 [Alcaligenes faecalis] >gi|1190185366|gb|ARP53960.1| peptidase [Alcaligenes faecalis] >gi|1190310430|gb|OSZ36633.1| peptidase M48 [Alcaligenes faecalis] >gi|1190320412|gb|OSZ46498.1| peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 138.272 bits (347), Expect = 8.010e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|737289667|ref|WP_035272816.1| (peptidase M48 [Alcaligenes faecalis] >gi|700678357|gb|KGP00366.1| peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 138.272 bits (347), Expect = 8.184e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|1178535334|ref|WP_083053437.1| (peptidase M48 [Alcaligenes faecalis] >gi|1175592460|gb|OQV33199.1| peptidase M48 [Alcaligenes faecalis subsp. phenolicus])

HSP 1 Score: 137.887 bits (346), Expect = 8.452e-37
Identity = 78/165 (47.27%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             ED +NA  MPGGK+ +++GL K +  T+ ELAAVIGHEI+H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NEDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEIAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|755130807|ref|WP_042481049.1| (MULTISPECIES: peptidase M48 [Alcaligenaceae] >gi|928592628|emb|CUI45750.1| Uncharacterized metalloprotease yggG [Achromobacter sp. ATCC8750] >gi|1061388674|dbj|GAU72033.1| peptidase M48 [Alcaligenes faecalis subsp. faecalis NBRC 13111])

HSP 1 Score: 135.961 bits (341), Expect = 5.709e-36
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             +D +NA  MPGGK+ +++GL K +  T+ ELAAVIGHE++H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NQDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEMAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVSLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
BLAST of EWM24513.1 vs. NCBI_GenBank
Match: gi|799150377|ref|WP_045929987.1| (peptidase M48 [Alcaligenes faecalis] >gi|953007276|gb|ALO36973.1| peptidase M48 [Alcaligenes faecalis] >gi|1190319585|gb|OSZ45673.1| peptidase M48 [Alcaligenes faecalis] >gi|1190327010|gb|OSZ53005.1| peptidase M48 [Alcaligenes faecalis] >gi|1190328648|gb|OSZ54634.1| peptidase M48 [Alcaligenes faecalis])

HSP 1 Score: 135.576 bits (340), Expect = 6.778e-36
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 0
Query:   21 TEDVMNAAAMPGGKVVIFTGLKKCVH-TEEELAAVIGHEISHVLLRHSAEQMGSTALMNYFFFLL-ALLGLP-VNELTLLLGDLTWQRPNSRLHEKEADAVGVLLCAKAGYNPAAAVRVFERMAGEELKRSKGVTVPGFLSTHPAFPERIALLKREVEKVRPLYE 182
             +D +NA  MPGGK+ +++GL K +  T+ ELAAVIGHE++H L  HS EQ+      ++   +L AL G+  VN+L   L ++ ++ PNSR HE EAD +GV L A+AGY+P AAV ++++M   E  RS+    P FLSTHPA   RIA L+   E+V PLY+
Sbjct:  110 NQDEVNAWCMPGGKMAVYSGLIKRIQPTDAELAAVIGHEMAHALREHSREQVSQKMATSFGLTVLSALTGVQAVNDLGGTLSEVMFELPNSRTHESEADLIGVELAARAGYDPRAAVTLWQKMGALEQGRSQ----PEFLSTHPASSTRIADLQAISERVMPLYQ 270          
The following BLAST results are available for this feature:
BLAST of EWM24513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106013|gb|EWM24513.1|1.110e-138100.00peptidase m48 ste24p [Nannochloropsis gaditana][more]
gi|497079688|ref|WP_009462160.1|7.272e-3747.27MULTISPECIES: M48-family peptidase [Alcaligenes] >... [more]
gi|1209945653|ref|WP_088450165.1|7.591e-3747.27peptidase M48 [Alcaligenes faecalis] >gi|120948070... [more]
gi|982009509|ref|WP_060185170.1|7.925e-3747.27peptidase M48 [Alcaligenes faecalis] >gi|979539681... [more]
gi|651371118|ref|WP_026483372.1|7.925e-3747.27peptidase M48 [Alcaligenes faecalis][more]
gi|1027758358|ref|WP_063690485.1|8.010e-3747.27peptidase M48 [Alcaligenes faecalis] >gi|119018536... [more]
gi|737289667|ref|WP_035272816.1|8.184e-3747.27peptidase M48 [Alcaligenes faecalis] >gi|700678357... [more]
gi|1178535334|ref|WP_083053437.1|8.452e-3747.27peptidase M48 [Alcaligenes faecalis] >gi|117559246... [more]
gi|755130807|ref|WP_042481049.1|5.709e-3646.06MULTISPECIES: peptidase M48 [Alcaligenaceae] >gi|9... [more]
gi|799150377|ref|WP_045929987.1|6.778e-3646.06peptidase M48 [Alcaligenes faecalis] >gi|953007276... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6176rna6176Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications