rna6174, rna6174 (mRNA) Nannochloropsis gaditana

Overview
Namerna6174
Unique Namerna6174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1849
Alignment locationCM002467.1:772992..773753 -

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Properties
Property NameValue
Productgeneral transcription factor iih subunit
Orig transcript idgnl|cribi|Naga_100678g1.3066.mrna
Orig protein idgnl|cribi|Naga_100678g1.3066
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:772992..773753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100678g1gene5964Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24514.1cds6159Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6174rna6174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6174 ID=rna6174|Name=rna6174|organism=Nannochloropsis gaditana|type=mRNA|length=1849bp
AAGGGTTACGACTCCCCGTTTAGGGCCAATGCTCGGGGGCACGCCTTTGA
TTCGTGACCTTTTTTGGGAGAAATTGGTACATGGTTACAACAAGTACAAG
TCATGGTATACCTTCGGATTCCATACCTTCCTTGGCGCCTCCCCTTCTAC
ACACAGAGCATCCGACGATGAGAGGATAAGGGAAGCGCATTTAAGAAGTC
ACTCTGCATCGATCAGCGTGTGTGAATGACATCATGAAACTATCCGACGG
TGCGGAAACGAAAGGCGAAAGCTCAACGCAGACTGACGGTGGCAGGCGAA
AGCAGACTTTCAGAGTCTTAACCTACAATGTCTGGATTGCACCACTTGTA
AGGTGGAATCCGATCGAGAATTTAGAGGCAATATGTAAATTCATCGAAAG
CTTGGACGTCGACATTGTCTGTCTGCAAGAGGCGTTCGACTGGCGCCTGG
GACCGATGGGTTTTTTGTGCGAGACCCTCTGGGGGGGGGGGGCATCATTC
GGCCCTCTTTCCTGGTTTTTCTACGTCGAAGGTCTTCTCTTCCCAGTTTC
GCAAACATGTCACCAAAAACGCATCATCGAGGCCCTCCTCCCCTCCCTCC
CTCACCACCTGCCCTCCGCCCCCATCCCCTTCGGCCGGGGCCACAATCAA
GGCCTGCTCGTCCTTTCCAAGCACCCCCTCCACCGGCCCCTGCGCCAATA
CCTGACCTGCACGCCTGTGCACCACATGGGCTTCCAGGCGTTCACGGTCG
CACCTTTGCCCCGGGAGGGAAGGGGAAAGGGCGGGGAGGCGGGGGCGAGG
GAGGACATCCGCTTCGTCAACCTCCACTTGGTACCGAATTTCCATACCCA
TCCGTGGAAAGGCAGGGTCTTAGGGTGGCTCGGGGAGAGGGATGTGCCAC
GCATGCAGGCAAAGCAGCTGGCGGAGATCGGGGAGGAGGTGGGGAGGGAG
GGAGGGAAGGAGGGCGGGACGGGGGGAAGGGCATGGTGCGTTGTCGGCGA
CTTCAACGTGCATAGACCGCGGGTCTTGGGCGTGGGCAGCCTGGTCGACC
AAGTCACATGCCCGCAGGAGCAGCACATCCTCGACCACTTTGTCTCGCCT
TTGCCCTACAACTACCAGGTGTTTGCCGACAATACCCTCAGCGATCACTA
CCCTGTCCTGGCGACCTTTGCATTGTGAGGAGACGCGCGAGGAGGCTGAG
GACTCAGGAGACGAGAGGGAAAAGGGGAAAAAAATATGGATGGAGTGCGT
CCAATGTCGCATGGACCGTGTTCATCAACTCACTTTTTTGGGGTAGGGAG
GGTTTTTGTTGATGATTTTATCTTTCCCCCCCGCCCCGGGCGTGGCACTC
AAGCGTGGCTGGAGCGACTTCTGAGTCCGACCGCTATTCGTCCTCCATCC
CAAGCACTGCATTCAATGAACATTCGCGCGTGTCACAATGCCCGAGCCCA
TGTTGCTGTCACGCCTGAAGACCTGCCTAGCCTTAGTACACACCACGCAC
ACACAACGCACAGAGCTCCATCCTCCCTTCACCCTTGGCTTCTTCTCTTG
TCCTCAAAACAGATACATACACCTTACTCATCGACTCGCTTCCTTTTGTT
CTTCGGCCTATGCTCCCTCCCTCTCCCTAGGCCCAGCGTGAATCGTCCCT
TCTCGTCGCAGCACCCCCTCTTGCCCCCTCTCCAACCCCCCATCCGCGGC
AGGTCTTCTACCATATTAAACATTCATTTTGCACATAACCTCTTGATCAA
TGCCCGTCCTTGTCCAATTTTAAAAATTATATCCAGCTTCCCCCCTTCCC
CCTTTGTCTGCCACCCTTCAGTCGCACCATTCAGCGCTCGTCACTTTGA
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protein sequence of rna6174

>rna6174-protein ID=rna6174-protein|Name=rna6174|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYH
VLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL
RETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVD
VETMM
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mRNA from alignment at CM002467.1:772992..773753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6174 ID=rna6174|Name=rna6174|organism=Nannochloropsis gaditana|type=mRNA|length=762bp|location=Sequence derived from alignment at CM002467.1:772992..773753- (Nannochloropsis gaditana)
GGAAGGGAGGACGCAGAGGAGGTCACGGCGCTGCGTCGAATCCTCTTTGC
CCGTCTGGGGGAGATGAACGATAGTCCCTCCTCCATGGAGTTTGTGCTCC
GGCAACTCCAAGTCTCGCCCCACCCCCGCCTACGGCACGCCTTCTACCAC
GTGCTTGTGGCGGTGATGGGGCAGGAAGGAGGGTGGGGGGTCCGCGCGGC
CTTTGCCACCGGGGGTTTTCGGCAGTTTTTGTTGAGCCGCAGCACCGAGA
GGGACAAGGTAGGGATGGAGTGGAAGTACAGTTTGGTGCAAGCCGTGCTT
CGGGAGACAGACGGCGGTGAAGGCGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCGCGGGGTCTGTTGGGAGAAGACGTCTTGGAGGAGC
TCCGAACATATTCCAAAGCCGGACCGTTTTATGTGGGGAGGCAGGTCGAC
GTGGAGACTATGATGTGATCAAGGAGAGGGGAGGCCGGTGGGAGGGAGAA
GCGTGGCAATGGTGAGGGGCGAGGTGCGGGTCAGGGGTAGGGTCGGCCTT
AACCTTAACCCTAACTGAAGAGACATGCGGCCCACGCCCGATGTCGGACC
AAGAGGGTGGGAGCCAGCCCGTGTTGGTATCTGGGTAGAAACCCCGTACA
GACACGCAAGAAGTTTCGATAAGGCACATAAGATCCAGAAACGAGGGGGC
ACACATGGCCATGGAAAGGAAAGCTAATAAGACGAACAAAAAACAAATTT
TGGTGTTCACGA
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Coding sequence (CDS) from alignment at CM002467.1:772992..773753-

>rna6174 ID=rna6174|Name=rna6174|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002467.1:772992..773753- (Nannochloropsis gaditana)
GGAAGGGAGGACGCAGAGGAGGTCACGGCGCTGCGTCGAATCCTCTTTGC
CCGTCTGGGGGAGATGAACGATAGTCCCTCCTCCATGGAGTTTGTGCTCC
GGCAACTCCAAGTCTCGCCCCACCCCCGCCTACGGCACGCCTTCTACCAC
GTGCTTGTGGCGGTGATGGGGCAGGAAGGAGGGTGGGGGGTCCGCGCGGC
CTTTGCCACCGGGGGTTTTCGGCAGTTTTTGTTGAGCCGCAGCACCGAGA
GGGACAAGGTAGGGATGGAGTGGAAGTACAGTTTGGTGCAAGCCGTGCTT
CGGGAGACAGACGGCGGTGAAGGCGGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCGCGGGGTCTGTTGGGAGAAGACGTCTTGGAGGAGC
TCCGAACATATTCCAAAGCCGGACCGTTTTATGTGGGGAGGCAGGTCGAC
GTGGAGACTATGATGTGA
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Synonyms
Publications