EWM24514.1, cds6159 (CDS) Nannochloropsis gaditana

Overview
NameEWM24514.1
Unique Namecds6159
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:773286..773753 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24514.1
Productgeneral transcription factor iih subunit
Partialtrue
Orig transcript idgnl|cribi|Naga_100678g1.3066.mrna
GbkeyCDS
End range.
End range773753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:773286..773753 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0043248proteasome assembly
Vocabulary: INTERPRO
TermDefinition
IPR01953826S_Psome_nonATP_su5
Homology
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|585106016|gb|EWM24514.1| (general transcription factor iih subunit, partial [Nannochloropsis gaditana])

HSP 1 Score: 307.375 bits (786), Expect = 9.650e-106
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155
            GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM
Sbjct:    1 GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|470460765|ref|XP_004341496.1| (HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440798342|gb|ELR19410.1| HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 69.3218 bits (168), Expect = 6.835e-11
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0
Query:   40 PHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYV 145
            P P LRHA +H + A+      WGV+A FA  GF +F+++R TE  K G EWKY++V++++        GE   +      RAR  LGE    +L TY   G  YV
Sbjct:  399 PFPDLRHATFHAVQALARHP--WGVKALFAYPGFLEFIVNRGTETTKEGKEWKYAIVESIVM-------GEKQYD-----NRARETLGEAAFNQLVTYLTEGVHYV 490          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|635372144|emb|CCI39752.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 68.5514 bits (166), Expect = 1.217e-10
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0
Query:    3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            E   E+  L + ++  LG  + S S+ E+++  L+  P   LR A Y +L AV  Q   WG++A  + GGF +++L R+TE  K   EWK+++V A+L
Sbjct:  386 EKDAEIWNLNKTIYEALGRASRSDSTTEYLMSLLK-QPFEELRIAVYGLLQAVAAQNAEWGLQALISYGGFFEYILDRNTEPTKECREWKFAVVDAIL 482          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|635372145|emb|CCI39753.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 68.5514 bits (166), Expect = 1.218e-10
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0
Query:    3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            E   E+  L + ++  LG  + S S+ E+++  L+  P   LR A Y +L AV  Q   WG++A  + GGF +++L R+TE  K   EWK+++V A+L
Sbjct:  388 EKDAEIWNLNKTIYEALGRASRSDSTTEYLMSLLK-QPFEELRIAVYGLLQAVAAQNAEWGLQALISYGGFFEYILDRNTEPTKECREWKFAVVDAIL 484          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|1214713756|gb|OWZ24637.1| (hypothetical protein PHMEG_000243 [Phytophthora megakarya])

HSP 1 Score: 68.5514 bits (166), Expect = 1.455e-10
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            LF  LG      SSM  ++  L+  P   LR + +HVL +V  Q   WG+RA  + GGF +FL+ R+TE  K   EWK++++ AVL
Sbjct:  409 LFNSLGVECAQQSSMTLLMNALK-QPFEELRTSVFHVLRSVAAQNSPWGLRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 493          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|568021983|gb|ETL96064.1| (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 67.781 bits (164), Expect = 2.507e-10
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            LF  LG      S+M  ++  L+  P   LR + +HVL +V  Q   WG+RA  + GGF +FL+ R+TE  K   EWK++++ AVL
Sbjct:  414 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 498          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|970629470|gb|KUF76717.1| (26S proteasome non-ATPase regulatory subunit 5 [Phytophthora nicotianae])

HSP 1 Score: 67.3958 bits (163), Expect = 2.833e-10
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            LF  LG      S+M  ++  L+  P   LR + +HVL +V  Q   WG+RA  + GGF +FL+ R+TE  K   EWK++++ AVL
Sbjct:  390 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 474          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|325181222|emb|CCA15636.1| (general transcription factor IIH subunit putative [Albugo laibachii Nc14])

HSP 1 Score: 67.3958 bits (163), Expect = 3.210e-10
Identity = 43/152 (28.29%), Postives = 72/152 (47.37%), Query Frame = 0
Query:    3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETM 154
            E   E+ AL + ++  +G  + S S+ E+++  L+  P   LR A Y +L AV  Q   WG++   + GGF +++L R+TE  K   EWK+++  A+L                        LL   +L +L+ + + GP Y+G  V    M
Sbjct:  899 EKDAEIWALNQTIYQAIGRASRSNSTTEYLMSFLK-QPFEELRIAVYGLLQAVAAQNAEWGIQTILSYGGFFEYILDRNTEPTKECREWKFAVADAIL------------------ASPFSNLLDPIILFKLKEHLRKGP-YIGNSVSAPEM 1030          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|570989020|gb|ETP47302.1| (hypothetical protein F442_06634 [Phytophthora parasitica P10297])

HSP 1 Score: 67.3958 bits (163), Expect = 3.226e-10
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
            LF  LG      S+M  ++  L+  P   LR + +HVL +V  Q   WG+RA  + GGF +FL+ R+TE  K   EWK++++ AVL
Sbjct:  401 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 485          
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|698817660|ref|XP_009841859.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574103088|gb|ETV68632.1| hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 67.3958 bits (163), Expect = 3.272e-10
Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 0
Query:   15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155
            LF  LG  +   S+M  ++  L+  P   +R   Y +L  V  Q   WG+ A  A GGF ++L+ R TE  K   EWK+++V A+L                    + + +LG   +EEL  Y   GP Y GR    E MM
Sbjct:  412 LFHALGVFSGRASTMHHLMECLR-QPFEPIRVGVYTLLQTVAAQGHPWGLEALHAYGGFIEYLVDRQTEPTKTTREWKFAIVDALL------------------ASKFQHVLGARAVEELTKYFDEGP-YAGRAKQAEPMM 532          
The following BLAST results are available for this feature:
BLAST of EWM24514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106016|gb|EWM24514.1|9.650e-106100.00general transcription factor iih subunit, partial ... [more]
gi|470460765|ref|XP_004341496.1|6.835e-1138.68HEAT repeat domain containing protein [Acanthamoeb... [more]
gi|635372144|emb|CCI39752.1|1.217e-1035.71unnamed protein product [Albugo candida][more]
gi|635372145|emb|CCI39753.1|1.218e-1035.71unnamed protein product [Albugo candida][more]
gi|1214713756|gb|OWZ24637.1|1.455e-1040.70hypothetical protein PHMEG_000243 [Phytophthora me... [more]
gi|568021983|gb|ETL96064.1|2.507e-1039.53hypothetical protein, variant 2 [Phytophthora para... [more]
gi|970629470|gb|KUF76717.1|2.833e-1039.5326S proteasome non-ATPase regulatory subunit 5 [Ph... [more]
gi|325181222|emb|CCA15636.1|3.210e-1028.29general transcription factor IIH subunit putative ... [more]
gi|570989020|gb|ETP47302.1|3.226e-1039.53hypothetical protein F442_06634 [Phytophthora para... [more]
gi|698817660|ref|XP_009841859.1|3.272e-1031.91hypothetical protein, variant 1 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6174rna6174Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications