EWM24514.1, cds6159 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|585106016|gb|EWM24514.1| (general transcription factor iih subunit, partial [Nannochloropsis gaditana]) HSP 1 Score: 307.375 bits (786), Expect = 9.650e-106 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155
GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM
Sbjct: 1 GREDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|470460765|ref|XP_004341496.1| (HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440798342|gb|ELR19410.1| HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 69.3218 bits (168), Expect = 6.835e-11 Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 0
Query: 40 PHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYV 145
P P LRHA +H + A+ WGV+A FA GF +F+++R TE K G EWKY++V++++ GE + RAR LGE +L TY G YV
Sbjct: 399 PFPDLRHATFHAVQALARHP--WGVKALFAYPGFLEFIVNRGTETTKEGKEWKYAIVESIVM-------GEKQYD-----NRARETLGEAAFNQLVTYLTEGVHYV 490
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|635372144|emb|CCI39752.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 68.5514 bits (166), Expect = 1.217e-10 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
E E+ L + ++ LG + S S+ E+++ L+ P LR A Y +L AV Q WG++A + GGF +++L R+TE K EWK+++V A+L
Sbjct: 386 EKDAEIWNLNKTIYEALGRASRSDSTTEYLMSLLK-QPFEELRIAVYGLLQAVAAQNAEWGLQALISYGGFFEYILDRNTEPTKECREWKFAVVDAIL 482
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|635372145|emb|CCI39753.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 68.5514 bits (166), Expect = 1.218e-10 Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0
Query: 3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
E E+ L + ++ LG + S S+ E+++ L+ P LR A Y +L AV Q WG++A + GGF +++L R+TE K EWK+++V A+L
Sbjct: 388 EKDAEIWNLNKTIYEALGRASRSDSTTEYLMSLLK-QPFEELRIAVYGLLQAVAAQNAEWGLQALISYGGFFEYILDRNTEPTKECREWKFAVVDAIL 484
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|1214713756|gb|OWZ24637.1| (hypothetical protein PHMEG_000243 [Phytophthora megakarya]) HSP 1 Score: 68.5514 bits (166), Expect = 1.455e-10 Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
LF LG SSM ++ L+ P LR + +HVL +V Q WG+RA + GGF +FL+ R+TE K EWK++++ AVL
Sbjct: 409 LFNSLGVECAQQSSMTLLMNALK-QPFEELRTSVFHVLRSVAAQNSPWGLRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 493
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|568021983|gb|ETL96064.1| (hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 67.781 bits (164), Expect = 2.507e-10 Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
LF LG S+M ++ L+ P LR + +HVL +V Q WG+RA + GGF +FL+ R+TE K EWK++++ AVL
Sbjct: 414 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 498
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|970629470|gb|KUF76717.1| (26S proteasome non-ATPase regulatory subunit 5 [Phytophthora nicotianae]) HSP 1 Score: 67.3958 bits (163), Expect = 2.833e-10 Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
LF LG S+M ++ L+ P LR + +HVL +V Q WG+RA + GGF +FL+ R+TE K EWK++++ AVL
Sbjct: 390 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 474
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|325181222|emb|CCA15636.1| (general transcription factor IIH subunit putative [Albugo laibachii Nc14]) HSP 1 Score: 67.3958 bits (163), Expect = 3.210e-10 Identity = 43/152 (28.29%), Postives = 72/152 (47.37%), Query Frame = 0
Query: 3 EDAEEVTALRRILFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETM 154
E E+ AL + ++ +G + S S+ E+++ L+ P LR A Y +L AV Q WG++ + GGF +++L R+TE K EWK+++ A+L LL +L +L+ + + GP Y+G V M
Sbjct: 899 EKDAEIWALNQTIYQAIGRASRSNSTTEYLMSFLK-QPFEELRIAVYGLLQAVAAQNAEWGIQTILSYGGFFEYILDRNTEPTKECREWKFAVADAIL------------------ASPFSNLLDPIILFKLKEHLRKGP-YIGNSVSAPEM 1030
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|570989020|gb|ETP47302.1| (hypothetical protein F442_06634 [Phytophthora parasitica P10297]) HSP 1 Score: 67.3958 bits (163), Expect = 3.226e-10 Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVL 100
LF LG S+M ++ L+ P LR + +HVL +V Q WG+RA + GGF +FL+ R+TE K EWK++++ AVL
Sbjct: 401 LFNSLGSECGQQSTMVLLMNALK-QPFEELRTSVFHVLRSVAAQNNPWGMRALLSYGGFFEFLMDRTTEPTKETREWKFAVLDAVL 485
BLAST of EWM24514.1 vs. NCBI_GenBank
Match: gi|698817660|ref|XP_009841859.1| (hypothetical protein, variant 1 [Aphanomyces astaci] >gi|574103088|gb|ETV68632.1| hypothetical protein, variant 1 [Aphanomyces astaci]) HSP 1 Score: 67.3958 bits (163), Expect = 3.272e-10 Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 0
Query: 15 LFARLGEMNDSPSSMEFVLRQLQVSPHPRLRHAFYHVLVAVMGQEGGWGVRAAFATGGFRQFLLSRSTERDKVGMEWKYSLVQAVLRETDGGEGGEGGREGGREGGRARGLLGEDVLEELRTYSKAGPFYVGRQVDVETMM 155
LF LG + S+M ++ L+ P +R Y +L V Q WG+ A A GGF ++L+ R TE K EWK+++V A+L + + +LG +EEL Y GP Y GR E MM
Sbjct: 412 LFHALGVFSGRASTMHHLMECLR-QPFEPIRVGVYTLLQTVAAQGHPWGLEALHAYGGFIEYLVDRQTEPTKTTREWKFAIVDALL------------------ASKFQHVLGARAVEELTKYFDEGP-YAGRAKQAEPMM 532 The following BLAST results are available for this feature:
BLAST of EWM24514.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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