rna6170, rna6170 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6170
Unique Name	rna6170
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1185
Alignment location	CM002467.1:763952..765902 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin family expressed
Orig transcript id	gnl\|cribi\|Naga_100447g3.3127.mrna
Orig protein id	gnl\|cribi\|Naga_100447g3.3127
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:763952..765902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100447g3	gene5960	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6170	rna6170-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24518.1	cds6155	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:763952..765902+
coding sequence from alignment at CM002467.1:763952..765902+

mRNA sequence

>rna6170 ID=rna6170|Name=rna6170|organism=Nannochloropsis gaditana|type=mRNA|length=1185bp
ATGAGAGACTCGAGGCCTCCCCCTCCCTCCGCCGGCACCTCCTCCCCCTA
CTTGCGCCTCCCGCCCCTCCTTCAAGACAGGCACTTGAAGGAACTGGTCG
ACCTCCGTGCCGAGCACACGCACCTTCTGGAACGTGCCAATGAAGAACAA
GCGAAGCTTCTAGAAGGAGTGCAGCAGGAACTGGAAAGGCGCACGGAGGC
CTTTGAATTGTACCGGGCACGAGCGCACACGGCCCTGAAAAGAGGCGCGA
ACGAGCAGCGGGACCATGATGTTAAAGTGGAGAAAATGCGGGCCAGGATG
ATGGAAGTGGAAGAGAAACTGGTGGAGATGGAACGAGAGCGGAAGAGGGA
CAAGCAGGCCTTGAAGGAGGTGGGGGAAGAAGCATCGGATCGGGCCCAGG
CACTGAGAACGGCGATGGCTGAAGCGGAAGTACGCCCCCGCCCTCCTTTG
GACGGTTCCCTCGGCAGTGTGGACGCGGAGGAGGCCTTCATTCAGGCGGC
ACGCGTGCAATCCCGGCGGGACGAGGAAGTGAAGCGGCTCACGCAACAGG
TCCAAGGGCTCCAGGTCCGGATCCGAGAGCGGGAAGAGGCGATGCAGGAC
ATGGACGCACAAGGGCGGGCGGCAGCCCGGGAGTGGGAGCTTTCGGAGCG
CGGTGGGAAGGAGGCACAAGATCGATTGACGTATTTAAAAAATGCGGTCT
ATCGCTACCTCCGGTCCCCGCCAGAGGCAGGAAGCGAACGCGCTGCCCTC
GTGCCGGTGATATGCACCATTTTACGATTTTCTCAGAGTGAGACGCTGGA
GGTTCAGCAGGCAGTGACGGGTGTCGGAGCAGGAAGTGCTTTGCCGGCTA
CTATCGGGGCCCTGTCGACGTTCTTCTGGGGAGGTGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGTAGTGTTTCCAGGCAGGCGCATCCGCA
CCTGATAACACCACGGCGGCAGAGTACCAGCATGACGGAGGAATCGCCGT
CCATTACGTCGTCCTCGTCTTCCTCGGCTTCCTTGGGCACTGGAGGGGCG
GGAAGGGGGGGGGAAGAGGGGAGGGGAAGGAGCAGGGAGGGGTTGCGAGA
AGGAATGCGAGAGCGCAATGCGGAGGCCCCGGCAGAAAAAGAGGGAGAAG
GAGGAACCAGTATTCTTGAATCTCAAGAGTTGTAA

protein sequence of rna6170

>rna6170-protein ID=rna6170-protein|Name=rna6170|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHI
KCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEG
LATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPT
GSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSA
QEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAG
VAVG

mRNA from alignment at CM002467.1:763952..765902+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6170 ID=rna6170|Name=rna6170|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp|location=Sequence derived from alignment at CM002467.1:763952..765902+ (Nannochloropsis gaditana)
ATGATTCCCTCCGTGTGTTTGTACGAGACGCGTCcggcatgggaggaggc
gttgagGAAGCAGCGAGACCTTCTCTGGAAGTCTACGGTCGATTCAAGGT
AGCGCGCCGCATAAAACGACAGACCCTTGGCGACCTGCCCTTACACGCGA
CATCGTGAGAATGTACCGTGCAGGTGTAACAGGCGTTGGAAGCGGGGCGA
ACGGGGGTTTATGCCTTTGTACCCTAGAATTCCTTTTCGTGAATCGAAAT
CGATCTCTTTGGAGAAAGCAAGCAGAAGACGTAGTGCGTTGGTTTCTGGT
GCACTCCTGTTTTGGCAGTCACGCATGTTACATACCGCAAGGCATGCTCA
GAGATGCATTACTCACTTTGACATGCACACAGGGACAAGAAGTCAAGGAC
GGACGAGGTCATGGCACCGATCACTGTCCACATCAAATGCGCCAATGCCA
AAAAGTACTCGGTTAGCGTGGAGCAGGACAAGCGCGTCTCCGACTTGAAG
GTGGGTGGATGATTCACGTTCGATCAATGGAGGTCTTGCCACAGAACATG
CTCCTTTCTAGGGAGGCATGCTTAAGAAAAGTGGGGGAACGGGTTCTTGA
GAACAAGGACTTTGTGCTGAAGATGACTCGTACCGGACCAAAAGAGGCGT
GTATGCCTTGTTTCACGGCATGCTACATCGCTGTTTGTCTCTTCACGCCG
TTATGGCTGACTCACCTGGTGCATGGAGGTGTGCCCTGGTCCTTTTAgaa
cggagggcgaggagggacctGGTGCACTAATTGCGTTCTATATGCCGCCT
GGTCCCCGGGCCTGGTAGGCTCTCATTGATGATGGCCACCACAATCCCTC
TCATTGATTCGCAAGCTATCACAGAGCATGGCGTCGACAGCGGACGCGCT
caccgcccttcccgcccgtcacGATCCCACCCCGTGCATCTCAtaccctc
tctctcttccccccccccagttCGCCATTGAGGCCATGTCCGATATCCCC
GCAACGCACCAACGCCTTATCCACAAAGGGAAAGTGCTcaaagatgagga
gggcTTGGCCACGTACACCATCGACAACGATTCCACCGTGCACTTGGTGC
GTGCGCCCTCGGCGACCACGACCTCAGCCCCCCCCGCGTCCACCCACAcg
gtccctcccccgccctcctccaccacccccgcccctcccttccccccgcc
cacgggcTCTGGGGCCACCAATCCCTTCGCGGCTTtgatgggaggagcag
ggggtggGCTGGGAGGGTCTCCGGGGTCTACGCCTCCATTCCAGGCAGGG
AGCAACCCTATGTTTGGCGGGCTCGGTATGGGCCCAGGGGGGTTTCCGAG
CGCCCAAGAACAGCAGAggatgcagcagcagctcatGCAGgtacaaggag
ggagaaagggagaaataggagcaggaagcagggaagcTTTTGGGGTGAAA
AAGCTTTTGTGACCTTGGGAGCGGGGCCAGAGTCTTTCTTATGGTACATG
CCGACGCCCATTTCGCtggtcccctccctccctccctccctccctccctc
cctccctccatctatCCATCCCAAGAACCCCGAGATGATGGACCAGGTGA
TGCAGTCTCCCCTTATGCAGCAAATGATGAACTCGCCGGAGCTAATGCGG
AGCATGATGATGGCCAACCCCCAGGTGAGGCtagaaagaggagggaggga
gggagggagggagggagggagggagggagataaggaaggggaaggaactT
GGCGGATCGGTTCATCTCGGACTCGTCATGATTGGAAGGGATAGGGTCGT
TGGGAAgggttgggaggaggggggaggggaagggagataaTGATGGCCGC
GGTGGATGCGTTGCTGCCTGCGTCCTCTCTGCCGCGTgtattcctctttc
cttcggGGTCTCGTTGACCAGATCTCTACAGCGGGCGTTGCGGTCGGCTA
A

Coding sequence (CDS) from alignment at CM002467.1:763952..765902+

>rna6170 ID=rna6170|Name=rna6170|organism=Nannochloropsis gaditana|type=CDS|length=3825bp|location=Sequence derived from alignment at CM002467.1:763952..765902+ (Nannochloropsis gaditana)
ATGATTCCCTCCGTGTGTTTGTACGAGACGCGTCcggcatgggaggaggc
gttgagGAAGCAGCGAGACCTTCTCTGGAAGTCTACGGTCGATTCAAGGG
ACAAGAAGTCAAGGACGGACGAGGTCATGGCACCGATCACTGTCCACATC
AAATGCGCCAATGCCAAAAAGTACTCGGTTAGCGTGGAGCAGGACAAGCG
CGTCTCCGACTTGAAGttCGCCATTGAGGCCATGTCCGATATCCCCGCAA
CGCACCAACGCCTTATCCACAAAGGGAAAGTGCTcaaagatgaggagggc
TTGGCCACGTACACCATCGACAACGATTCCACCGTGCACTTGGTGCGTGC
GCCCTCGGCGACCACGACCTCAGCCCCCCCCGCGTCCACCCACAcggtcc
ctcccccgccctcctccaccacccccgcccctcccttccccccgcccacg
ggcTCTGGGGCCACCAATCCCTTCGCGGCTTtgatgggaggagcaggggg
tggGCTGGGAGGGTCTCCGGGGTCTACGCCTCCATTCCAGGCAGGGAGCA
ACCCTATGTTTGGCGGGCTCGGTATGGGCCCAGGGGGGTTTCCGAGCGCC
CAAGAACAGCAGAggatgcagcagcagctcatGCAGAACCCCGAGATGAT
GGACCAGGTGATGCAGTCTCCCCTTATGCAGCAAATGATGAACTCGCCGG
AGCTAATGCGGAGCATGATGATGGCCAACCCCCAGATCTCTACAGCGGGC
GTTGCGGTCGGCTAAATGATTCCCTCCGTGTGTTTGTACGAGACGCGTCc
ggcatgggaggaggcgttgagGAAGCAGCGAGACCTTCTCTGGAAGTCTA
CGGTCGATTCAAGGGACAAGAAGTCAAGGACGGACGAGGTCATGGCACCG
ATCACTGTCCACATCAAATGCGCCAATGCCAAAAAGTACTCGGTTAGCGT
GGAGCAGGACAAGCGCGTCTCCGACTTGAAGttCGCCATTGAGGCCATGT
CCGATATCCCCGCAACGCACCAACGCCTTATCCACAAAGGGAAAGTGCTc
aaagatgaggagggcTTGGCCACGTACACCATCGACAACGATTCCACCGT
GCACTTGGTGCGTGCGCCCTCGGCGACCACGACCTCAGCCCCCCCCGCGT
CCACCCACAcggtccctcccccgccctcctccaccacccccgcccctccc
ttccccccgcccacgggcTCTGGGGCCACCAATCCCTTCGCGGCTTtgat
gggaggagcagggggtggGCTGGGAGGGTCTCCGGGGTCTACGCCTCCAT
TCCAGGCAGGGAGCAACCCTATGTTTGGCGGGCTCGGTATGGGCCCAGGG
GGGTTTCCGAGCGCCCAAGAACAGCAGAggatgcagcagcagctcatGCA
GAACCCCGAGATGATGGACCAGGTGATGCAGTCTCCCCTTATGCAGCAAA
TGATGAACTCGCCGGAGCTAATGCGGAGCATGATGATGGCCAACCCCCAG
ATCTCTACAGCGGGCGTTGCGGTCGGCTAAATGATTCCCTCCGTGTGTTT
GTACGAGACGCGTCcggcatgggaggaggcgttgagGAAGCAGCGAGACC
TTCTCTGGAAGTCTACGGTCGATTCAAGGGACAAGAAGTCAAGGACGGAC
GAGGTCATGGCACCGATCACTGTCCACATCAAATGCGCCAATGCCAAAAA
GTACTCGGTTAGCGTGGAGCAGGACAAGCGCGTCTCCGACTTGAAGttCG
CCATTGAGGCCATGTCCGATATCCCCGCAACGCACCAACGCCTTATCCAC
AAAGGGAAAGTGCTcaaagatgaggagggcTTGGCCACGTACACCATCGA
CAACGATTCCACCGTGCACTTGGTGCGTGCGCCCTCGGCGACCACGACCT
CAGCCCCCCCCGCGTCCACCCACAcggtccctcccccgccctcctccacc
acccccgcccctcccttccccccgcccacgggcTCTGGGGCCACCAATCC
CTTCGCGGCTTtgatgggaggagcagggggtggGCTGGGAGGGTCTCCGG
GGTCTACGCCTCCATTCCAGGCAGGGAGCAACCCTATGTTTGGCGGGCTC
GGTATGGGCCCAGGGGGGTTTCCGAGCGCCCAAGAACAGCAGAggatgca
gcagcagctcatGCAGAACCCCGAGATGATGGACCAGGTGATGCAGTCTC
CCCTTATGCAGCAAATGATGAACTCGCCGGAGCTAATGCGGAGCATGATG
ATGGCCAACCCCCAGATCTCTACAGCGGGCGTTGCGGTCGGCTAAATGAT
TCCCTCCGTGTGTTTGTACGAGACGCGTCcggcatgggaggaggcgttga
gGAAGCAGCGAGACCTTCTCTGGAAGTCTACGGTCGATTCAAGGGACAAG
AAGTCAAGGACGGACGAGGTCATGGCACCGATCACTGTCCACATCAAATG
CGCCAATGCCAAAAAGTACTCGGTTAGCGTGGAGCAGGACAAGCGCGTCT
CCGACTTGAAGttCGCCATTGAGGCCATGTCCGATATCCCCGCAACGCAC
CAACGCCTTATCCACAAAGGGAAAGTGCTcaaagatgaggagggcTTGGC
CACGTACACCATCGACAACGATTCCACCGTGCACTTGGTGCGTGCGCCCT
CGGCGACCACGACCTCAGCCCCCCCCGCGTCCACCCACAcggtccctccc
ccgccctcctccaccacccccgcccctcccttccccccgcccacgggcTC
TGGGGCCACCAATCCCTTCGCGGCTTtgatgggaggagcagggggtggGC
TGGGAGGGTCTCCGGGGTCTACGCCTCCATTCCAGGCAGGGAGCAACCCT
ATGTTTGGCGGGCTCGGTATGGGCCCAGGGGGGTTTCCGAGCGCCCAAGA
ACAGCAGAggatgcagcagcagctcatGCAGAACCCCGAGATGATGGACC
AGGTGATGCAGTCTCCCCTTATGCAGCAAATGATGAACTCGCCGGAGCTA
ATGCGGAGCATGATGATGGCCAACCCCCAGATCTCTACAGCGGGCGTTGC
GGTCGGCTAAATGATTCCCTCCGTGTGTTTGTACGAGACGCGTCcggcat
gggaggaggcgttgagGAAGCAGCGAGACCTTCTCTGGAAGTCTACGGTC
GATTCAAGGGACAAGAAGTCAAGGACGGACGAGGTCATGGCACCGATCAC
TGTCCACATCAAATGCGCCAATGCCAAAAAGTACTCGGTTAGCGTGGAGC
AGGACAAGCGCGTCTCCGACTTGAAGttCGCCATTGAGGCCATGTCCGAT
ATCCCCGCAACGCACCAACGCCTTATCCACAAAGGGAAAGTGCTcaaaga
tgaggagggcTTGGCCACGTACACCATCGACAACGATTCCACCGTGCACT
TGGTGCGTGCGCCCTCGGCGACCACGACCTCAGCCCCCCCCGCGTCCACC
CACAcggtccctcccccgccctcctccaccacccccgcccctcccttccc
cccgcccacgggcTCTGGGGCCACCAATCCCTTCGCGGCTTtgatgggag
gagcagggggtggGCTGGGAGGGTCTCCGGGGTCTACGCCTCCATTCCAG
GCAGGGAGCAACCCTATGTTTGGCGGGCTCGGTATGGGCCCAGGGGGGTT
TCCGAGCGCCCAAGAACAGCAGAggatgcagcagcagctcatGCAGAACC
CCGAGATGATGGACCAGGTGATGCAGTCTCCCCTTATGCAGCAAATGATG
AACTCGCCGGAGCTAATGCGGAGCATGATGATGGCCAACCCCCAGATCTC
TACAGCGGGCGTTGCGGTCGGCTAA

Synonyms

Publications