EWM24518.1, cds6155 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|585106022|gb|EWM24518.1| (ubiquitin family expressed [Nannochloropsis gaditana]) HSP 1 Score: 521.546 bits (1342), Expect = 0.000e+0 Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query: 1 MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG 254
MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG
Sbjct: 1 MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG 254
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1179515922|ref|XP_020679899.1| (ubiquitin domain-containing protein DSK2b-like isoform X1 [Dendrobium catenatum]) HSP 1 Score: 138.272 bits (347), Expect = 6.039e-34 Identity = 82/218 (37.61%), Postives = 119/218 (54.59%), Query Frame = 0
Query: 44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQA-------------GSNPMF--GGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+P T+HI+C+N K+SV D VS K + D+PA QRLI+KG++LKD++ L +Y +++D T+HLVR + +TTS A+ + P++ T A PPT + A G SPGS GSN +F G G+ GFP E ++QQQL QNP MM +M P +Q +MN+P+LMR+++M+NPQI
Sbjct: 18 SPATIHIRCSNGSKFSVQTALDAFVSAFKSLVSEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSTTSNNSAT--NLGASPTNNTAASLGAPPTNNTA-------------ATGISPGSNEGGGLGGAELGASLFPGLGSNGIFGSGASGLFGTGFP---EFDQVQQQLAQNPNMMRDIMNMPAIQNLMNNPDLMRNLIMSNPQI 217
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1179515924|ref|XP_020679900.1| (ubiquitin domain-containing protein DSK2b-like isoform X2 [Dendrobium catenatum]) HSP 1 Score: 138.272 bits (347), Expect = 6.326e-34 Identity = 82/218 (37.61%), Postives = 119/218 (54.59%), Query Frame = 0
Query: 44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQA-------------GSNPMF--GGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+P T+HI+C+N K+SV D VS K + D+PA QRLI+KG++LKD++ L +Y +++D T+HLVR + +TTS A+ + P++ T A PPT + A G SPGS GSN +F G G+ GFP E ++QQQL QNP MM +M P +Q +MN+P+LMR+++M+NPQI
Sbjct: 18 SPATIHIRCSNGSKFSVQTALDAFVSAFKSLVSEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSTTSNNSAT--NLGASPTNNTAASLGAPPTNNTA-------------ATGISPGSNEGGGLGGAELGASLFPGLGSNGIFGSGASGLFGTGFP---EFDQVQQQLAQNPNMMRDIMNMPAIQNLMNNPDLMRNLIMSNPQI 217
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|659094044|ref|XP_008447852.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X2 [Cucumis melo]) HSP 1 Score: 131.724 bits (330), Expect = 1.262e-31 Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 0
Query: 46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQ--EQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+TV+I+C+N K+SV+ D V+ K + DIPA QRLI+KG++LKD++ L +Y + D T+H+VR A +++T SAP ++ +T S+ AP GS + F GGLG S +F GLG P G A E +++QQQL QNP MM ++M P +Q +MN+P+LMR+++M+NPQ+
Sbjct: 23 VTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNT-----RSSDTAPGVTRGVGSNESGAF------GNGGLGAS-------------LFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQM 203
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1035404514|ref|XP_016900483.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X1 [Cucumis melo]) HSP 1 Score: 131.724 bits (330), Expect = 1.440e-31 Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 0
Query: 46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQ--EQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+TV+I+C+N K+SV+ D V+ K + DIPA QRLI+KG++LKD++ L +Y + D T+H+VR A +++T SAP ++ +T S+ AP GS + F GGLG S +F GLG P G A E +++QQQL QNP MM ++M P +Q +MN+P+LMR+++M+NPQ+
Sbjct: 23 VTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNT-----RSSDTAPGVTRGVGSNESGAF------GNGGLGAS-------------LFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQM 203
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1175846028|ref|XP_020576570.1| (ubiquitin domain-containing protein DSK2b-like isoform X2 [Phalaenopsis equestris]) HSP 1 Score: 125.561 bits (314), Expect = 2.235e-29 Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 0
Query: 44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPA----------STHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+P T+HI+C+N K+SV D VS K I D+PA QRLI+KG++LKD++ L +Y +++D T+HLVR + + TS A S ++ PP+ A P + G A L GL GS F G++ FG G P E +MQQQL QNP MM +M P +Q ++N+P+LMR+++M+NPQ+
Sbjct: 18 SPATIHIRCSNGSKFSVQTALDAVVSVFKGLISEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSNTSNNTAASPGAFPTNNSAASIGAPPADNNVATGRSPSSNEGGGLGGAELGASFFPGL----GSNGLFGVGASGSFG------TGLP---EFDQMQQQLTQNPNMMRDLMNMPAIQNLVNNPDLMRNLIMSNPQM 217
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1175846026|ref|XP_020576569.1| (ubiquitin domain-containing protein DSK2b-like isoform X1 [Phalaenopsis equestris]) HSP 1 Score: 125.561 bits (314), Expect = 2.302e-29 Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 0
Query: 44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPA----------STHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+P T+HI+C+N K+SV D VS K I D+PA QRLI+KG++LKD++ L +Y +++D T+HLVR + + TS A S ++ PP+ A P + G A L GL GS F G++ FG G P E +MQQQL QNP MM +M P +Q ++N+P+LMR+++M+NPQ+
Sbjct: 18 SPATIHIRCSNGSKFSVQTALDAVVSVFKGLISEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSNTSNNTAASPGAFPTNNSAASIGAPPADNNVATGRSPSSNEGGGLGGAELGASFFPGL----GSNGLFGVGASGSFG------TGLP---EFDQMQQQLTQNPNMMRDLMNMPAIQNLVNNPDLMRNLIMSNPQM 217
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|976917563|gb|KVI03001.1| (Heat shock chaperonin-binding [Cynara cardunculus var. scolymus]) HSP 1 Score: 122.865 bits (307), Expect = 1.498e-28 Identity = 75/203 (36.95%), Postives = 109/203 (53.69%), Query Frame = 0
Query: 46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+TV+I+C++ K+SV V + V K + DIPA QRLI+KG++LKD++ L +Y ++ + TVHLVR P+A+ SA A TT AP P G + +MGGAG L ST P E +++QQQL QNP MM +M PL+Q +MN+P+++R+MMM+NPQ+
Sbjct: 27 VTVNIRCSSGTKFSVQVSLESSVESFKSVLAQNCDIPAEQQRLIYKGRILKDDQTLKSYGLEAEHTVHLVRGFVPAASNNSAGTA-----------TTRAPNITPSVARGVGSIEEGMMGGAGASL----FSTLGLNGLGGNGGMSGAGLP-------ELEQIQQQLTQNPNMMRDIMDLPLVQNLMNNPDVIRNMMMSNPQM 207
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1035937817|gb|OAY65448.1| (Ubiquitin domain-containing protein DSK2b [Ananas comosus]) HSP 1 Score: 122.094 bits (305), Expect = 3.453e-28 Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 0
Query: 46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPP-----ASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+TVHI+C+N K+SV V+ + V K + D+PA QRLI+KG++LKD++ LA+Y +++D T+HLVR + ++T AP ++ T P FP GLGG G+ G++ +FG GFP ++ MQQQL QNP MM ++M +P++Q ++N+P++MR+++M NPQ+
Sbjct: 23 VTVHIRCSNGSKFSVQVDLEATVGAFKAVVAGSCDVPAEQQRLIYKGRILKDDQTLASYGVESDHTIHLVRGAAPSSTPAPTTTTNQGASRTPNSSPPGGGSGSLFP--------------------GLGGMSGT------GASGLFG------SGFPDLEQ---MQQQLTQNPNMMREIMNTPIIQSLLNNPDIMRNIIMNNPQM 193
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1147562746|ref|XP_020084963.1| (ubiquitin domain-containing protein DSK2a-like [Ananas comosus]) HSP 1 Score: 121.709 bits (304), Expect = 7.863e-28 Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 0
Query: 46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPP-----ASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
+TVHI+C+N K+SV V+ + V K + D+PA QRLI+KG++LKD++ LA+Y +++D T+HLVR + ++T AP ++ T P FP GLGG G+ G++ +FG GFP ++ MQQQL QNP MM ++M +P++Q ++N+P++MR+++M NPQ+
Sbjct: 81 VTVHIRCSNGSKFSVQVDLEATVGAFKGVVAGSCDVPAEQQRLIYKGRILKDDQTLASYGVESDHTIHLVRGAAPSSTPAPTTTTNQGASRTPNSSPPGGGSGSLFP--------------------GLGGMSGT------GASGLFG------SGFPDLEQ---MQQQLTQNPNMMREIMNTPIIQSLLNNPDIMRNIIMNNPQM 251 The following BLAST results are available for this feature:
BLAST of EWM24518.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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