EWM24518.1, cds6155 (CDS) Nannochloropsis gaditana

Overview
NameEWM24518.1
Unique Namecds6155
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:763952..764049 +
Alignment locationCM002467.1:764334..764451 +
Alignment locationCM002467.1:764922..765341 +
Alignment locationCM002467.1:765527..765625 +
Alignment locationCM002467.1:765873..765902 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24518.1
Productubiquitin family expressed
Orig transcript idgnl|cribi|Naga_100447g3.3127.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:763952..764049 +
CM002467.1supercontigCM002467.1:764334..764451 +
CM002467.1supercontigCM002467.1:764922..765341 +
CM002467.1supercontigCM002467.1:765527..765625 +
CM002467.1supercontigCM002467.1:765873..765902 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR015496Ubiquilin
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|585106022|gb|EWM24518.1| (ubiquitin family expressed [Nannochloropsis gaditana])

HSP 1 Score: 521.546 bits (1342), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG 254
            MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG
Sbjct:    1 MIPSVCLYETRPAWEEALRKQRDLLWKSTVDSRDKKSRTDEVMAPITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQISTAGVAVG 254          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1179515922|ref|XP_020679899.1| (ubiquitin domain-containing protein DSK2b-like isoform X1 [Dendrobium catenatum])

HSP 1 Score: 138.272 bits (347), Expect = 6.039e-34
Identity = 82/218 (37.61%), Postives = 119/218 (54.59%), Query Frame = 0
Query:   44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQA-------------GSNPMF--GGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +P T+HI+C+N  K+SV    D  VS  K  +    D+PA  QRLI+KG++LKD++ L +Y +++D T+HLVR  + +TTS   A+   +   P++ T A    PPT + A               G SPGS                   GSN +F  G  G+   GFP   E  ++QQQL QNP MM  +M  P +Q +MN+P+LMR+++M+NPQI
Sbjct:   18 SPATIHIRCSNGSKFSVQTALDAFVSAFKSLVSEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSTTSNNSAT--NLGASPTNNTAASLGAPPTNNTA-------------ATGISPGSNEGGGLGGAELGASLFPGLGSNGIFGSGASGLFGTGFP---EFDQVQQQLAQNPNMMRDIMNMPAIQNLMNNPDLMRNLIMSNPQI 217          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1179515924|ref|XP_020679900.1| (ubiquitin domain-containing protein DSK2b-like isoform X2 [Dendrobium catenatum])

HSP 1 Score: 138.272 bits (347), Expect = 6.326e-34
Identity = 82/218 (37.61%), Postives = 119/218 (54.59%), Query Frame = 0
Query:   44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQA-------------GSNPMF--GGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +P T+HI+C+N  K+SV    D  VS  K  +    D+PA  QRLI+KG++LKD++ L +Y +++D T+HLVR  + +TTS   A+   +   P++ T A    PPT + A               G SPGS                   GSN +F  G  G+   GFP   E  ++QQQL QNP MM  +M  P +Q +MN+P+LMR+++M+NPQI
Sbjct:   18 SPATIHIRCSNGSKFSVQTALDAFVSAFKSLVSEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSTTSNNSAT--NLGASPTNNTAASLGAPPTNNTA-------------ATGISPGSNEGGGLGGAELGASLFPGLGSNGIFGSGASGLFGTGFP---EFDQVQQQLAQNPNMMRDIMNMPAIQNLMNNPDLMRNLIMSNPQI 217          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|659094044|ref|XP_008447852.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X2 [Cucumis melo])

HSP 1 Score: 131.724 bits (330), Expect = 1.262e-31
Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 0
Query:   46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQ--EQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +TV+I+C+N  K+SV+   D  V+  K  +    DIPA  QRLI+KG++LKD++ L +Y +  D T+H+VR  A +++T SAP ++ +T      S+  AP      GS  +  F        GGLG S             +F GLG  P G   A   E +++QQQL QNP MM ++M  P +Q +MN+P+LMR+++M+NPQ+
Sbjct:   23 VTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNT-----RSSDTAPGVTRGVGSNESGAF------GNGGLGAS-------------LFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQM 203          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1035404514|ref|XP_016900483.1| (PREDICTED: ubiquitin domain-containing protein DSK2a-like isoform X1 [Cucumis melo])

HSP 1 Score: 131.724 bits (330), Expect = 1.440e-31
Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 0
Query:   46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQ--EQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +TV+I+C+N  K+SV+   D  V+  K  +    DIPA  QRLI+KG++LKD++ L +Y +  D T+H+VR  A +++T SAP ++ +T      S+  AP      GS  +  F        GGLG S             +F GLG  P G   A   E +++QQQL QNP MM ++M  P +Q +MN+P+LMR+++M+NPQ+
Sbjct:   23 VTVNIRCSNGSKFSVTTSLDSTVATFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNT-----RSSDTAPGVTRGVGSNESGAF------GNGGLGAS-------------LFPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLIMSNPQM 203          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1175846028|ref|XP_020576570.1| (ubiquitin domain-containing protein DSK2b-like isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 125.561 bits (314), Expect = 2.235e-29
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 0
Query:   44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPA----------STHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +P T+HI+C+N  K+SV    D  VS  K  I    D+PA  QRLI+KG++LKD++ L +Y +++D T+HLVR  + + TS   A          S  ++  PP+    A    P +  G     A L      GL    GS   F  G++  FG       G P   E  +MQQQL QNP MM  +M  P +Q ++N+P+LMR+++M+NPQ+
Sbjct:   18 SPATIHIRCSNGSKFSVQTALDAVVSVFKGLISEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSNTSNNTAASPGAFPTNNSAASIGAPPADNNVATGRSPSSNEGGGLGGAELGASFFPGL----GSNGLFGVGASGSFG------TGLP---EFDQMQQQLTQNPNMMRDLMNMPAIQNLVNNPDLMRNLIMSNPQM 217          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1175846026|ref|XP_020576569.1| (ubiquitin domain-containing protein DSK2b-like isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 125.561 bits (314), Expect = 2.302e-29
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 0
Query:   44 APITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPPA----------STHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +P T+HI+C+N  K+SV    D  VS  K  I    D+PA  QRLI+KG++LKD++ L +Y +++D T+HLVR  + + TS   A          S  ++  PP+    A    P +  G     A L      GL    GS   F  G++  FG       G P   E  +MQQQL QNP MM  +M  P +Q ++N+P+LMR+++M+NPQ+
Sbjct:   18 SPATIHIRCSNGSKFSVQTALDAVVSVFKGLISEKCDVPAEQQRLIYKGRILKDDKTLESYGLESDHTIHLVRGAALSNTSNNTAASPGAFPTNNSAASIGAPPADNNVATGRSPSSNEGGGLGGAELGASFFPGL----GSNGLFGVGASGSFG------TGLP---EFDQMQQQLTQNPNMMRDLMNMPAIQNLVNNPDLMRNLIMSNPQM 217          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|976917563|gb|KVI03001.1| (Heat shock chaperonin-binding [Cynara cardunculus var. scolymus])

HSP 1 Score: 122.865 bits (307), Expect = 1.498e-28
Identity = 75/203 (36.95%), Postives = 109/203 (53.69%), Query Frame = 0
Query:   46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVR--APSATTTSAPPASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +TV+I+C++  K+SV V  +  V   K  +    DIPA  QRLI+KG++LKD++ L +Y ++ + TVHLVR   P+A+  SA  A           TT AP   P    G  +    +MGGAG  L     ST                 P       E +++QQQL QNP MM  +M  PL+Q +MN+P+++R+MMM+NPQ+
Sbjct:   27 VTVNIRCSSGTKFSVQVSLESSVESFKSVLAQNCDIPAEQQRLIYKGRILKDDQTLKSYGLEAEHTVHLVRGFVPAASNNSAGTA-----------TTRAPNITPSVARGVGSIEEGMMGGAGASL----FSTLGLNGLGGNGGMSGAGLP-------ELEQIQQQLTQNPNMMRDIMDLPLVQNLMNNPDVIRNMMMSNPQM 207          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1035937817|gb|OAY65448.1| (Ubiquitin domain-containing protein DSK2b [Ananas comosus])

HSP 1 Score: 122.094 bits (305), Expect = 3.453e-28
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 0
Query:   46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPP-----ASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +TVHI+C+N  K+SV V+ +  V   K  +    D+PA  QRLI+KG++LKD++ LA+Y +++D T+HLVR  + ++T AP       ++ T    P        FP                    GLGG  G+      G++ +FG       GFP  ++   MQQQL QNP MM ++M +P++Q ++N+P++MR+++M NPQ+
Sbjct:   23 VTVHIRCSNGSKFSVQVDLEATVGAFKAVVAGSCDVPAEQQRLIYKGRILKDDQTLASYGVESDHTIHLVRGAAPSSTPAPTTTTNQGASRTPNSSPPGGGSGSLFP--------------------GLGGMSGT------GASGLFG------SGFPDLEQ---MQQQLTQNPNMMREIMNTPIIQSLLNNPDIMRNIIMNNPQM 193          
BLAST of EWM24518.1 vs. NCBI_GenBank
Match: gi|1147562746|ref|XP_020084963.1| (ubiquitin domain-containing protein DSK2a-like [Ananas comosus])

HSP 1 Score: 121.709 bits (304), Expect = 7.863e-28
Identity = 72/206 (34.95%), Postives = 115/206 (55.83%), Query Frame = 0
Query:   46 ITVHIKCANAKKYSVSVEQDKRVSDLKFAIEAMSDIPATHQRLIHKGKVLKDEEGLATYTIDNDSTVHLVRAPSATTTSAPP-----ASTHTVPPPPSSTTPAPPFPPPTGSGATNPFAALMGGAGGGLGGSPGSTPPFQAGSNPMFGGLGMGPGGFPSAQEQQRMQQQLMQNPEMMDQVMQSPLMQQMMNSPELMRSMMMANPQI 246
            +TVHI+C+N  K+SV V+ +  V   K  +    D+PA  QRLI+KG++LKD++ LA+Y +++D T+HLVR  + ++T AP       ++ T    P        FP                    GLGG  G+      G++ +FG       GFP  ++   MQQQL QNP MM ++M +P++Q ++N+P++MR+++M NPQ+
Sbjct:   81 VTVHIRCSNGSKFSVQVDLEATVGAFKGVVAGSCDVPAEQQRLIYKGRILKDDQTLASYGVESDHTIHLVRGAAPSSTPAPTTTTNQGASRTPNSSPPGGGSGSLFP--------------------GLGGMSGT------GASGLFG------SGFPDLEQ---MQQQLTQNPNMMREIMNTPIIQSLLNNPDIMRNIIMNNPQM 251          
The following BLAST results are available for this feature:
BLAST of EWM24518.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106022|gb|EWM24518.1|0.000e+0100.00ubiquitin family expressed [Nannochloropsis gadita... [more]
gi|1179515922|ref|XP_020679899.1|6.039e-3437.61ubiquitin domain-containing protein DSK2b-like iso... [more]
gi|1179515924|ref|XP_020679900.1|6.326e-3437.61ubiquitin domain-containing protein DSK2b-like iso... [more]
gi|659094044|ref|XP_008447852.1|1.262e-3138.05PREDICTED: ubiquitin domain-containing protein DSK... [more]
gi|1035404514|ref|XP_016900483.1|1.440e-3138.05PREDICTED: ubiquitin domain-containing protein DSK... [more]
gi|1175846028|ref|XP_020576570.1|2.235e-2936.62ubiquitin domain-containing protein DSK2b-like iso... [more]
gi|1175846026|ref|XP_020576569.1|2.302e-2936.62ubiquitin domain-containing protein DSK2b-like iso... [more]
gi|976917563|gb|KVI03001.1|1.498e-2836.95Heat shock chaperonin-binding [Cynara cardunculus ... [more]
gi|1035937817|gb|OAY65448.1|3.453e-2834.95Ubiquitin domain-containing protein DSK2b [Ananas ... [more]
gi|1147562746|ref|XP_020084963.1|7.863e-2834.95ubiquitin domain-containing protein DSK2a-like [An... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6170rna6170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications