rna6166, rna6166 (mRNA) Nannochloropsis gaditana

Overview
Namerna6166
Unique Namerna6166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1305
Alignment locationCM002467.1:750935..752533 -

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Properties
Property NameValue
Producthigh mobility group
Orig transcript idgnl|cribi|Naga_100545g3.4567.mrna
Orig protein idgnl|cribi|Naga_100545g3.4567
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:750935..752533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100545g3gene5956Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24523.1cds6151Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6166rna6166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6166 ID=rna6166|Name=rna6166|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
ATGCCCTCCACTCCACCATCACCAAGAAAAACAGACGCGCACGATAAAGA
AGAGGACATCGACCTTGAAAATGCTGTCGAGGACCCCCTCCTTTCTCTCC
CGGTTTCCTCTTCCACGACCTCGCCCCTCCCTCTCTCCTCGGAGCTCCCC
TCCGACGCCCCTCCTCCCCCACCTTCTTCCCGCTTTCTCTTTGACATAGG
GCTCGGCCAGGTTCTTTCCCTCCTCATCACCGCCACAGGGATATTTTCTT
CCCTTCTTGCAGAGAGTGGTCGCTCCATCCCCGCCACGCAGGCTTGCTTG
ACCTACTTTATCCTCTCCTTCCACCTATGCCGCCTGCCTCGCGGAGAGCC
CTTGAAAGTGGCGTGGTGGAAATACCTTTTATTGGCAGCCATAGATCTCG
AAGGCAATTATCTGGTGGTTCTTTCGTTTCGATACACCTCCATCACCTCC
GTCCTCCTGCTCGACGGCTTCGCAATTCCCAGCACCATGCTCTTTTCCTG
GATCTATTTAAGAAGCCGTTACAAAAGCTTGCACTTCGTGGGAGTGCTGG
CATGCTTAGCGGGCCTGGGGACTGTGGTATTCTCGGATTCCCGCCTCCTC
CCTCGTCAAGACGACAAGGACACCGTGGCCGCGGTGTCATTCCTTTCCCC
CTCTCCCTCCCCACTGTTCACAGGGCCTGATGCCCCATTGACCTCCATCC
TCTCGTCCTCGCCCCATCCCCTTCGCCCAGGCTCCGCCTCCCTGTCCCCT
CCGTCCCCTTCCCTCGTCTCCTCCTCTTCCCCTTCCTCCTTCCCCCCCGC
CCTCCTCGGAGACCTGCTCTGCCTCTTGGGCGCTACCCTCTACGCCGTGT
CGAACGTTGTACAGGAAGCCATCGTGAAGACCCACGACCCCACCGAGTTC
CTGGGGATGCTCGGAGGGCTCGGAACCATCCTGGCGGGAGTTCAAGCGCT
CGTGTTGGAGTTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAT
GGGGTGTCGAGATGGGGTACCTGGTGGGGTTTGCAGTGACGTTGGCGATC
ATGTACACGCTGACCGCCAGGTTCTTGACGGAGGCCGACGCCACGCTCTT
CAACCTCTCGCTCCTCACCTCCGACGCGTACGGCGTTTTTTATCGGTACG
TCGCCCTGCACCAGCCAGTGTCCTACTTGTACGGTGTCGGCTTTTGCCTG
ACCTTGGGAGGCCTGGGGATATACCACGTCCCGGGAGCAGTAAATTCCCC
CCACATGGTGCAACGGGCGAGGAGAGAAGGTGAAAGAGAAGAAGACAGAC
CGTAG
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protein sequence of rna6166

>rna6166-protein ID=rna6166-protein|Name=rna6166|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLP
AWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRG
QASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGL
PPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSD
PFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKS
FEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEG
EDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTL
AVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFH
PNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSG
VRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVE
EKIRLQIATLQTKALLKQQRRNRQDGRPDMAK
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mRNA from alignment at CM002467.1:750935..752533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6166 ID=rna6166|Name=rna6166|organism=Nannochloropsis gaditana|type=mRNA|length=1599bp|location=Sequence derived from alignment at CM002467.1:750935..752533- (Nannochloropsis gaditana)
ATGCTCCCACGAAAGGCGGGATCGTGTCTGGTAAGAAATGCTGCTTTGTC
GTGGGCGATCGCCCCACCCAGTATGAGCCAATCCTCACCTCCTTCCTCCC
CCTCCCTCGTCATCCCGCCCACAGAATCCCAACAAAACCCGCCCCTCCCC
GCCTGGCTCCCACCCCCCATTCCTTCCTGCATGGGCCTCATCAACGTCTC
CCGCACTCCCTCCTCGTCCCTCCCGGCCTCCGTTCCTGGATCCCGGGGCC
CGGTCCCTCAAGAGAGGGAGGAGAAAGAAGTCCTCAAACGGAAAAGGGGC
CAGGCAAGCCAAGCCACCGTGGGCGAGAAAGGAAAAACTTCCACGGGGCG
GCAAGCCTTCACCGCCCCGCCCCCCCTCCCGTGCTCCTCCTCGTCCTCCT
CCCACTCCTCCTCCTCCACCACCACGGCCGCCTCCTCCACACCCGGCCTC
CCCCCACCCCCCTTCCTTCCCCCTCCCCCGCCCTCCGCCCCTTCCCCTTC
CACCTCCTTCCTCCTGGACCCCGCGCGCCTCCGCGCCCTCGGGATCGACC
GACAGATGCTCGTGGACGTGGGCATCGAGAACGAGGAGAGTCGGTCGGAC
CCTTTCTACCTTCACATGGCCCACCAGCTCCGACGCGGCGCCCGCAAGAA
GGATCCGAGTGCACCCAAGCGGCCCCTGAGTGCCTACAACCTCTTCTTCC
GGGATTTGAAGGAGGCCTTGACGGCCAAGGGGCCGGCGGTGAAGAAGTCT
TTCGAAGGGTTGGGGAAGTATGTGGGGAAAGAATGGAGGAAGTTGGGGGA
GGAGGAACGGAAACGGTACGAGCAGATGGCGGAGGTGGACCGACGCCGGT
ACCACCGGGAAATGGCCGTCTATGAGGGGAGGGAGGAGGAGTTGGAGGGC
GAAGACGTGGAAATCAAGGAGGGGGGGGAGGGAAAGGGGAGGAAAGCGGA
GGACAAGGGGGGCGGCAAGGTGGGCCAGAGGGAGCTTGGAGGCTCCGACA
CCCGGCCAACCCCGGGCAAAGGCGTCGCCGTGGCTCCTCCCAGCACGCTG
GCCGTAGCCCCTCGGCGGACCCAGCCAAAGCGTGAACAAAGCAGCCGCCA
CATCACTAGTCCCCAGGCGTCGGGCCAAGCCGGGCACGCCCCTCCCGTGG
ACAGTGTCCCCGAGGCGGGACCGGGAGGATCCCAGACCCCGGCTTTCCAC
CCAAATCTGTCTGCTCAGGCCATGCCGACGCTCGTGCCGCCACCTGTGCG
AAGTGCGGCGCCTTTGATGAGGGTGGAGAAAGGGGAGAAAGCGCTGGCGT
GGCTGCCCGAGAGCCAGCAGGCCTCCCTACCACCATCATGTCCATCCGGA
GTGCGTGCAGGGCCTGGCCATAAAGCAGCAGGGAGGAAAGCAGCGGCCAC
CGCATCCTCGTCGTCGAGAAGGCCAGAGCCTTCCGCGCGTCTTCCTTGCC
CCTCCCTTGGGCCTCCGTTGCCCGCCCCGTCAACCACGCCGTCGGTGGAG
GAAAAAATTCGTCTTCAGATTGCCACGCTTCAGACCAAGGCTTTGTTGAA
ACAGCAGCGACGAAACAGACAGGACGGACGGCCAGATATGGCAAAATAA
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Coding sequence (CDS) from alignment at CM002467.1:750935..752533-

>rna6166 ID=rna6166|Name=rna6166|organism=Nannochloropsis gaditana|type=CDS|length=1599bp|location=Sequence derived from alignment at CM002467.1:750935..752533- (Nannochloropsis gaditana)
ATGCTCCCACGAAAGGCGGGATCGTGTCTGGTAAGAAATGCTGCTTTGTC
GTGGGCGATCGCCCCACCCAGTATGAGCCAATCCTCACCTCCTTCCTCCC
CCTCCCTCGTCATCCCGCCCACAGAATCCCAACAAAACCCGCCCCTCCCC
GCCTGGCTCCCACCCCCCATTCCTTCCTGCATGGGCCTCATCAACGTCTC
CCGCACTCCCTCCTCGTCCCTCCCGGCCTCCGTTCCTGGATCCCGGGGCC
CGGTCCCTCAAGAGAGGGAGGAGAAAGAAGTCCTCAAACGGAAAAGGGGC
CAGGCAAGCCAAGCCACCGTGGGCGAGAAAGGAAAAACTTCCACGGGGCG
GCAAGCCTTCACCGCCCCGCCCCCCCTCCCGTGCTCCTCCTCGTCCTCCT
CCCACTCCTCCTCCTCCACCACCACGGCCGCCTCCTCCACACCCGGCCTC
CCCCCACCCCCCTTCCTTCCCCCTCCCCCGCCCTCCGCCCCTTCCCCTTC
CACCTCCTTCCTCCTGGACCCCGCGCGCCTCCGCGCCCTCGGGATCGACC
GACAGATGCTCGTGGACGTGGGCATCGAGAACGAGGAGAGTCGGTCGGAC
CCTTTCTACCTTCACATGGCCCACCAGCTCCGACGCGGCGCCCGCAAGAA
GGATCCGAGTGCACCCAAGCGGCCCCTGAGTGCCTACAACCTCTTCTTCC
GGGATTTGAAGGAGGCCTTGACGGCCAAGGGGCCGGCGGTGAAGAAGTCT
TTCGAAGGGTTGGGGAAGTATGTGGGGAAAGAATGGAGGAAGTTGGGGGA
GGAGGAACGGAAACGGTACGAGCAGATGGCGGAGGTGGACCGACGCCGGT
ACCACCGGGAAATGGCCGTCTATGAGGGGAGGGAGGAGGAGTTGGAGGGC
GAAGACGTGGAAATCAAGGAGGGGGGGGAGGGAAAGGGGAGGAAAGCGGA
GGACAAGGGGGGCGGCAAGGTGGGCCAGAGGGAGCTTGGAGGCTCCGACA
CCCGGCCAACCCCGGGCAAAGGCGTCGCCGTGGCTCCTCCCAGCACGCTG
GCCGTAGCCCCTCGGCGGACCCAGCCAAAGCGTGAACAAAGCAGCCGCCA
CATCACTAGTCCCCAGGCGTCGGGCCAAGCCGGGCACGCCCCTCCCGTGG
ACAGTGTCCCCGAGGCGGGACCGGGAGGATCCCAGACCCCGGCTTTCCAC
CCAAATCTGTCTGCTCAGGCCATGCCGACGCTCGTGCCGCCACCTGTGCG
AAGTGCGGCGCCTTTGATGAGGGTGGAGAAAGGGGAGAAAGCGCTGGCGT
GGCTGCCCGAGAGCCAGCAGGCCTCCCTACCACCATCATGTCCATCCGGA
GTGCGTGCAGGGCCTGGCCATAAAGCAGCAGGGAGGAAAGCAGCGGCCAC
CGCATCCTCGTCGTCGAGAAGGCCAGAGCCTTCCGCGCGTCTTCCTTGCC
CCTCCCTTGGGCCTCCGTTGCCCGCCCCGTCAACCACGCCGTCGGTGGAG
GAAAAAATTCGTCTTCAGATTGCCACGCTTCAGACCAAGGCTTTGTTGAA
ACAGCAGCGACGAAACAGACAGGACGGACGGCCAGATATGGCAAAATAA
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Synonyms
Publications