EWM24523.1, cds6151 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|585106028|gb|EWM24523.1| (high mobility group [Nannochloropsis gaditana]) HSP 1 Score: 1048.5 bits (2710), Expect = 0.000e+0 Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0 Query: 1 MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK 532 MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK Sbjct: 1 MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK 532
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|599395632|ref|XP_007411406.1| (hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina 98AG31] >gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192, partial [Melampsora larici-populina 98AG31]) HSP 1 Score: 75.8702 bits (185), Expect = 1.970e-13 Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 0 Query: 211 RRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292 RR R+KDP+APKRPLSAY F +D +E + + P V SF +G+ +G +W+ LGEEE+K YE MA D++R+ E A YE Sbjct: 2 RRVKREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV--SFGEIGRLLGLKWKSLGEEEKKPYEDMACRDKKRHETEKAEYE 81
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|634346505|gb|KDE02271.1| (non-histone chromosomal protein 6 [Microbotryum lychnidis-dioicae p1A1 Lamole]) HSP 1 Score: 75.8702 bits (185), Expect = 3.058e-13 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0 Query: 213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGR 294 G KKDP+APKRPLSAY F ++ + + P SF LGK +G +W+ + +E++K Y Q AEVD+ RY RE A Y+ R Sbjct: 17 GKAKKDPNAPKRPLSAYMYFSQENRNTVKDDNPDA--SFGDLGKLLGAKWKDMSDEQKKSYIQKAEVDKNRYEREKASYDAR 96
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|1034744637|gb|OAV98625.1| (hypothetical protein PTTG_09594 [Puccinia triticina 1-1 BBBD Race 1]) HSP 1 Score: 75.0998 bits (183), Expect = 7.777e-13 Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0 Query: 209 QLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292 +++R ++KDP+APKRPLSAY F +D +E + + P V SF +G+ +G +W+ L EEE+K YE MA D++R+ E A YE Sbjct: 24 KVKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV--SFGEIGRLLGLKWKALAEEEKKPYEDMASRDKKRHEAEKAEYE 105
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|833493900|ref|XP_012770201.1| (high mobility group protein-like protein NHP1, putative [Babesia bigemina] >gi|656187689|emb|CDR98015.1| high mobility group protein-like protein NHP1, putative [Babesia bigemina]) HSP 1 Score: 72.7886 bits (177), Expect = 2.941e-12 Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0 Query: 210 LRRGAR-KKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVY 291 +++G R KKDP+APKR LS+Y F ++ + + AK P + K +GK +G W LGE ++ YE++AE DR RY RE A Y Sbjct: 9 IKKGKRTKKDPNAPKRALSSYMFFAKEKRGEIIAKNPEMAKDVAAVGKLIGSAWNALGEADKAPYEKLAEEDRARYEREKAEY 91
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|331220978|ref|XP_003323164.1| (high mobility group protein B1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] >gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]) HSP 1 Score: 73.1738 bits (178), Expect = 3.073e-12 Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0 Query: 209 QLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292 + +R ++KDP+APKRPLSAY F +D +E + + P V SF +G+ +G +W+ L EEE+K YE MA D++R+ E A YE Sbjct: 23 KTKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV--SFGEIGRLLGLKWKGLSEEEKKPYEDMASRDKKRHEAEKAEYE 104
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|358060355|dbj|GAA93760.1| (hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]) HSP 1 Score: 73.1738 bits (178), Expect = 4.173e-12 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREE 296 G ++KDP+APKRPLSAY + +D + + P SF LGK +G +W+ L E E+K+Y MA D+ RY A YEG+ E Sbjct: 38 GKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNPDA--SFGELGKILGAQWKDLDESEKKQYNDMATRDKERYTNAKAAYEGKAE 119
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|953455367|ref|XP_014571236.1| (hypothetical protein L969DRAFT_42644, partial [Mixia osmundae IAM 14324] >gi|658168193|gb|KEI42902.1| hypothetical protein L969DRAFT_42644, partial [Mixia osmundae IAM 14324]) HSP 1 Score: 73.1738 bits (178), Expect = 4.388e-12 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0 Query: 213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREE 296 G ++KDP+APKRPLSAY + +D + + P SF LGK +G +W+ L E E+K+Y MA D+ RY A YEG+ E Sbjct: 34 GKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNPDA--SFGELGKILGAQWKDLDESEKKQYNDMATRDKERYTNAKAAYEGKAE 115
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|913876629|gb|KNZ61353.1| (high mobility group protein B1 [Puccinia sorghi]) HSP 1 Score: 72.4034 bits (176), Expect = 5.351e-12 Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0 Query: 211 RRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292 +R + KDP+APKRPLSAY F +D +E + + P V SF +G+ +G +W+ L EEE+K YE MA D++R+ E A YE Sbjct: 25 KRVKKDKDPNAPKRPLSAYMYFSQDWRERIKNENPDV--SFGEIGRLLGHKWKALSEEEKKPYEDMACRDKKRHEAEKAEYE 104
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|401402785|ref|XP_003881334.1| (high mobility group protein, related [Neospora caninum Liverpool] >gi|675133492|ref|XP_008888633.1| HMG (high mobility group) box domain-containing protein [Hammondia hammondi] >gi|1085077353|ref|XP_018636503.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ME49] >gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool] >gi|523572804|gb|EPR59627.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii GT1] >gi|527311530|gb|EPT28161.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ME49] >gi|557732167|gb|ESS28383.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii VEG] >gi|661332574|gb|KEP60748.1| HMG (high mobility group) box domain-containing protein [Hammondia hammondi] >gi|672250753|gb|KFG28017.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii p89] >gi|672253525|gb|KFG29656.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672258204|gb|KFG33252.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii FOU] >gi|672299133|gb|KFG62952.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii RUB] >gi|672561073|gb|KFH02271.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii MAS] >gi|672574219|gb|KFH12763.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii VAND] >gi|820692873|tpe|CEL68615.1| TPA: High mobility group protein, related [Neospora caninum Liverpool] >gi|820700402|tpe|CEL76135.1| TPA: high mobility group protein [Toxoplasma gondii VEG] >gi|1005156908|gb|KYF44874.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ARI] >gi|1008943292|gb|KYK62396.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii TgCatPRC2]) HSP 1 Score: 72.0182 bits (175), Expect = 5.444e-12 Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0 Query: 216 KKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292 KKDP+APKRPLSA+ F +D +E + K P +K +GK VG+ W KL + ++K YE A D+ RY REM Y+ Sbjct: 14 KKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKAVADKARYEREMIAYK 90 The following BLAST results are available for this feature:
BLAST of EWM24523.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|