EWM24523.1, cds6151 (CDS) Nannochloropsis gaditana

Overview
NameEWM24523.1
Unique Namecds6151
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:750935..752533 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24523.1
Producthigh mobility group
Orig transcript idgnl|cribi|Naga_100545g3.4567.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:750935..752533 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Homology
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|585106028|gb|EWM24523.1| (high mobility group [Nannochloropsis gaditana])

HSP 1 Score: 1048.5 bits (2710), Expect = 0.000e+0
Identity = 532/532 (100.00%), Postives = 532/532 (100.00%), Query Frame = 0
Query:    1 MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK 532
            MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK
Sbjct:    1 MLPRKAGSCLVRNAALSWAIAPPSMSQSSPPSSPSLVIPPTESQQNPPLPAWLPPPIPSCMGLINVSRTPSSSLPASVPGSRGPVPQEREEKEVLKRKRGQASQATVGEKGKTSTGRQAFTAPPPLPCSSSSSSHSSSSTTTAASSTPGLPPPPFLPPPPPSAPSPSTSFLLDPARLRALGIDRQMLVDVGIENEESRSDPFYLHMAHQLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREEELEGEDVEIKEGGEGKGRKAEDKGGGKVGQRELGGSDTRPTPGKGVAVAPPSTLAVAPRRTQPKREQSSRHITSPQASGQAGHAPPVDSVPEAGPGGSQTPAFHPNLSAQAMPTLVPPPVRSAAPLMRVEKGEKALAWLPESQQASLPPSCPSGVRAGPGHKAAGRKAAATASSSSRRPEPSARLPCPSLGPPLPAPSTTPSVEEKIRLQIATLQTKALLKQQRRNRQDGRPDMAK 532          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|599395632|ref|XP_007411406.1| (hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina 98AG31] >gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192, partial [Melampsora larici-populina 98AG31])

HSP 1 Score: 75.8702 bits (185), Expect = 1.970e-13
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 0
Query:  211 RRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292
            RR  R+KDP+APKRPLSAY  F +D +E +  + P V  SF  +G+ +G +W+ LGEEE+K YE MA  D++R+  E A YE
Sbjct:    2 RRVKREKDPNAPKRPLSAYMFFSQDWRERIKTENPEV--SFGEIGRLLGLKWKSLGEEEKKPYEDMACRDKKRHETEKAEYE 81          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|634346505|gb|KDE02271.1| (non-histone chromosomal protein 6 [Microbotryum lychnidis-dioicae p1A1 Lamole])

HSP 1 Score: 75.8702 bits (185), Expect = 3.058e-13
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGR 294
            G  KKDP+APKRPLSAY  F ++ +  +    P    SF  LGK +G +W+ + +E++K Y Q AEVD+ RY RE A Y+ R
Sbjct:   17 GKAKKDPNAPKRPLSAYMYFSQENRNTVKDDNPDA--SFGDLGKLLGAKWKDMSDEQKKSYIQKAEVDKNRYEREKASYDAR 96          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|1034744637|gb|OAV98625.1| (hypothetical protein PTTG_09594 [Puccinia triticina 1-1 BBBD Race 1])

HSP 1 Score: 75.0998 bits (183), Expect = 7.777e-13
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 0
Query:  209 QLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292
            +++R  ++KDP+APKRPLSAY  F +D +E +  + P V  SF  +G+ +G +W+ L EEE+K YE MA  D++R+  E A YE
Sbjct:   24 KVKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV--SFGEIGRLLGLKWKALAEEEKKPYEDMASRDKKRHEAEKAEYE 105          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|833493900|ref|XP_012770201.1| (high mobility group protein-like protein NHP1, putative [Babesia bigemina] >gi|656187689|emb|CDR98015.1| high mobility group protein-like protein NHP1, putative [Babesia bigemina])

HSP 1 Score: 72.7886 bits (177), Expect = 2.941e-12
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  210 LRRGAR-KKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVY 291
            +++G R KKDP+APKR LS+Y  F ++ +  + AK P + K    +GK +G  W  LGE ++  YE++AE DR RY RE A Y
Sbjct:    9 IKKGKRTKKDPNAPKRALSSYMFFAKEKRGEIIAKNPEMAKDVAAVGKLIGSAWNALGEADKAPYEKLAEEDRARYEREKAEY 91          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|331220978|ref|XP_003323164.1| (high mobility group protein B1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] >gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3])

HSP 1 Score: 73.1738 bits (178), Expect = 3.073e-12
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  209 QLRRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292
            + +R  ++KDP+APKRPLSAY  F +D +E +  + P V  SF  +G+ +G +W+ L EEE+K YE MA  D++R+  E A YE
Sbjct:   23 KTKRVKKEKDPNAPKRPLSAYMYFSQDWRERIKTENPDV--SFGEIGRLLGLKWKGLSEEEKKPYEDMASRDKKRHEAEKAEYE 104          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|358060355|dbj|GAA93760.1| (hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324])

HSP 1 Score: 73.1738 bits (178), Expect = 4.173e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0
Query:  213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREE 296
            G ++KDP+APKRPLSAY  + +D +  +    P    SF  LGK +G +W+ L E E+K+Y  MA  D+ RY    A YEG+ E
Sbjct:   38 GKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNPDA--SFGELGKILGAQWKDLDESEKKQYNDMATRDKERYTNAKAAYEGKAE 119          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|953455367|ref|XP_014571236.1| (hypothetical protein L969DRAFT_42644, partial [Mixia osmundae IAM 14324] >gi|658168193|gb|KEI42902.1| hypothetical protein L969DRAFT_42644, partial [Mixia osmundae IAM 14324])

HSP 1 Score: 73.1738 bits (178), Expect = 4.388e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0
Query:  213 GARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYEGREE 296
            G ++KDP+APKRPLSAY  + +D +  +    P    SF  LGK +G +W+ L E E+K+Y  MA  D+ RY    A YEG+ E
Sbjct:   34 GKKEKDPNAPKRPLSAYMFYSQDKRTQVKEDNPDA--SFGELGKILGAQWKDLDESEKKQYNDMATRDKERYTNAKAAYEGKAE 115          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|913876629|gb|KNZ61353.1| (high mobility group protein B1 [Puccinia sorghi])

HSP 1 Score: 72.4034 bits (176), Expect = 5.351e-12
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 0
Query:  211 RRGARKKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292
            +R  + KDP+APKRPLSAY  F +D +E +  + P V  SF  +G+ +G +W+ L EEE+K YE MA  D++R+  E A YE
Sbjct:   25 KRVKKDKDPNAPKRPLSAYMYFSQDWRERIKNENPDV--SFGEIGRLLGHKWKALSEEEKKPYEDMACRDKKRHEAEKAEYE 104          
BLAST of EWM24523.1 vs. NCBI_GenBank
Match: gi|401402785|ref|XP_003881334.1| (high mobility group protein, related [Neospora caninum Liverpool] >gi|675133492|ref|XP_008888633.1| HMG (high mobility group) box domain-containing protein [Hammondia hammondi] >gi|1085077353|ref|XP_018636503.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ME49] >gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool] >gi|523572804|gb|EPR59627.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii GT1] >gi|527311530|gb|EPT28161.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ME49] >gi|557732167|gb|ESS28383.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii VEG] >gi|661332574|gb|KEP60748.1| HMG (high mobility group) box domain-containing protein [Hammondia hammondi] >gi|672250753|gb|KFG28017.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii p89] >gi|672253525|gb|KFG29656.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii GAB2-2007-GAL-DOM2] >gi|672258204|gb|KFG33252.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii FOU] >gi|672299133|gb|KFG62952.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii RUB] >gi|672561073|gb|KFH02271.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii MAS] >gi|672574219|gb|KFH12763.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii VAND] >gi|820692873|tpe|CEL68615.1| TPA: High mobility group protein, related [Neospora caninum Liverpool] >gi|820700402|tpe|CEL76135.1| TPA: high mobility group protein [Toxoplasma gondii VEG] >gi|1005156908|gb|KYF44874.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii ARI] >gi|1008943292|gb|KYK62396.1| HMG (high mobility group) box domain-containing protein [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 72.0182 bits (175), Expect = 5.444e-12
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  216 KKDPSAPKRPLSAYNLFFRDLKEALTAKGPAVKKSFEGLGKYVGKEWRKLGEEERKRYEQMAEVDRRRYHREMAVYE 292
            KKDP+APKRPLSA+  F +D +E +  K P +K     +GK VG+ W KL + ++K YE  A  D+ RY REM  Y+
Sbjct:   14 KKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPYESKAVADKARYEREMIAYK 90          
The following BLAST results are available for this feature:
BLAST of EWM24523.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106028|gb|EWM24523.1|0.000e+0100.00high mobility group [Nannochloropsis gaditana][more]
gi|599395632|ref|XP_007411406.1|1.970e-1350.00hypothetical protein MELLADRAFT_31192 [Melampsora ... [more]
gi|634346505|gb|KDE02271.1|3.058e-1346.34non-histone chromosomal protein 6 [Microbotryum ly... [more]
gi|1034744637|gb|OAV98625.1|7.777e-1345.24hypothetical protein PTTG_09594 [Puccinia triticin... [more]
gi|833493900|ref|XP_012770201.1|2.941e-1244.58high mobility group protein-like protein NHP1, put... [more]
gi|331220978|ref|XP_003323164.1|3.073e-1245.24high mobility group protein B1 [Puccinia graminis ... [more]
gi|358060355|dbj|GAA93760.1|4.173e-1244.05hypothetical protein E5Q_00406 [Mixia osmundae IAM... [more]
gi|953455367|ref|XP_014571236.1|4.388e-1244.05hypothetical protein L969DRAFT_42644, partial [Mix... [more]
gi|913876629|gb|KNZ61353.1|5.351e-1246.34high mobility group protein B1 [Puccinia sorghi][more]
gi|401402785|ref|XP_003881334.1|5.444e-1246.75high mobility group protein, related [Neospora can... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6166rna6166Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications