rna6159, rna6159 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6159
Unique Name	rna6159
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1473
Alignment location	CM002467.1:738040..740282 +

Link to JBrowse

Properties


Property Name	Value
Product	Regulatory factor, effector, bacterial
Orig transcript id	gnl\|cribi\|Naga_100427g3.10034.mrna
Orig protein id	gnl\|cribi\|Naga_100427g3.10034
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002467.1	supercontig	CM002467.1:738040..740282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100427g3	gene5950	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6159	rna6159-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24530.1	cds6144	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002467.1:738040..740282+
coding sequence from alignment at CM002467.1:738040..740282+

mRNA sequence

>rna6159 ID=rna6159|Name=rna6159|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp
ATGCGGAATGTCCCTCTCCTCGCTTTTCTCCTTTACCGTTCGGCGTCATC
TCTTCCTACATGGTGGCCGGTCTCAGTACCTCAAGGAGACCTTCGTCCTC
CCCCCACCATGTCTGCCATAACGGGGGCGTTTGCCAACGGCACGAAATTT
CTTCTTTACGGAGGGTGTACCTCATCGTGTTGCTTCTCCCCCGTCGATGC
GCATTGGGAGCTTAGCCTCTCGCCAGACCTGAAAGAAGGATCATGGAAGC
AACACACAGGTCTCCGCTCCGATGGAGGGACGGATAATATGGGCAATCCC
GTGTCCTCGCATCCTTCGTCTGCTCCCTCCGCCCGTTTTGGTGCGGCCAG
TGCGGTGGATAAGGAGGACGACGTGCTGTACGCGTTCGGGGGCCAGGACT
CCTCCCAAGCATTTTTGAGCGATATGTGGGCATACAACGCCATGTCATCG
GAGTGGCGTGAAATCCCAGCATCGGACAGAAGCCGCACGGACGAAGATGT
GTGGCCTACCCCGCGTGCGGCGGCGTCCTTGAGCGTGGTGGCAGACGAAG
CGGTTGGGAAAGTCCTTGTATTGGTGGGAGGGTTCGGTAAAGTCGGGGCG
GAGGACAACCAGGTGTGGGCGATGCGACTTGGTGCACAGGCGCGCCAAAA
GACTGAGGGGAGACCTGTGGATCAAGACTTGTTGGTTTCGGAAGGGTGGA
TCCGTTTAAGACCGGAACAAATGGAGTCGGGGGTAGGAAAGGAGTCGCAT
CCCTCCTCTTACTCTGCTGCGTATGGGGATGAAGAGATAAAAAACATTCC
TTTTCCTCCGACCCGTCGATCTTCCCTCGCCTCGAGCGTGAATTTTCCAG
CCCGGTGGCATCATGTCGCGGTCCCGAGCACCTCGACAGGCGCCACGCCC
TCCCCCTCGTCCTCCCCCCCTTCCTCGTCGAAGGCCGGGCTCATCCTCGT
GGGCGGCGTGGACGCGATGGGAGAGGATCGAAACGAGGTTTATTTGATGA
CGTTTGATTGGCACAGGCGGACATACGCGTGGCGCGTGCTGGCAATGGGA
ACGGCGGACGACGAGTCAATCACCCGTCTTCCTGTGCGACACGGTCACGT
CGCACTTCATTCCTCTTCCCCTTCATTCCCTTCCTTCCGCATCTTTGGTG
GCCTCAATACCACCCACGATACCCTTCCTTCTTCCTTTCTTGCGACGACT
TTCCGATTCGATTTGCCTCCAATCGAGCGATGGTCTAAAGAGGATTTCCC
CTCATCCCCAGGGGCTCGCGCGTACGCGGGGGTTGGACACGGCGAGAAGC
ATTCAATTGTCGTGGGTGGTTTTGCGGGGTTCACGGGAGATACAGACGAT
CGATTGTTGGATGATGTATGGGTATTTTCTCACGGAGAAGAGGTGGAGCA
GCTTCAAATGGCATTGACAGCAGGAGGGGACAAGGAAGGGTGGAATATGA
AAGGGCGACATCTAAGGACCTAA

protein sequence of rna6159

>rna6159-protein ID=rna6159-protein|Name=rna6159|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MNAHRICCVLFITITMPSTFASFTAVLFFASTVAAEVCHLYSSTIESPCF
TLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENS
EGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIM
SLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWA
GYDSPFVYVNRHNEVWVRVA

mRNA from alignment at CM002467.1:738040..740282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6159 ID=rna6159|Name=rna6159|organism=Nannochloropsis gaditana|type=mRNA|length=2243bp|location=Sequence derived from alignment at CM002467.1:738040..740282+ (Nannochloropsis gaditana)
ACTTTTCTTTACTTAGTTGACTGATGCAGTGCAGATGACAAGAGAGCCAC
GCTGTAGACGGCCTACTCATCGATCAAATTCTGCACGATCAAATTTCTGT
ACCATGGATCATGTTCGAATGGTTTTGACTCATCCCAAAAGCTTCTTGAA
GAAGCGCGTCCCTACTCCGCAAACCAATGCTGCCTCAATTTCAACGAATC
TAACTCACTAAATGAATGCCCACAGGATCTGCTGCGTTCTATTCATTACG
ATTACAATGCCCTCAACCTTTGCTTCCTTTACGGTACGTGTTTAGTAACT
CTTGGCCCTCGTGGAAAGGGATGTAAGAAAGTACAAGACTTGGCTGACGT
ATGTGCCCTCCCACACGAGAAAGAGTAACCTTTCTTACCCATCCGTCGTG
ACAACAAATTGAAAGCCATTTCCGTATGTCAGTGATTTATTTCAATAAAG
ATCGATGCCACGATGGCTATGCGTGCCTTAGCGTTGTAGACTTTTTTCGA
GGGACTCCAGCAATTGGGAGGTTGGCTTCTTgttgccttcttcctctccc
ttcatcAAACATCATGCGAATAAGTCTGGCTGACCGCTCAAGATTGGCTC
CTACTTCTTGCTATGATCGCAGTGTCTTTGTGATGAAAACCTGGTCGTTT
GCGCCAGTATTTGATGTAACGGGTAGTAGCTCACCCATTTGTTCCCTACA
TTTGCCCCACTTCGCTCTCTCAGGCCGTCCTCTTTTTCGCCTCTACGGTG
GCCGCTGAGGTTTGCCATCTCTATAGCTCTACCATTGAGTCCCCTTGCTT
CACCCTACTTCGAAATGAGTCTGGTTACGAAGTTCGCGAGTaccggggag
aggaaatgtGGACCaggtaagggaggggaggacgaggagtggagggaggg
agaggagggaagaaaatggggaggacggggagaagaagtTTAAAGGATGG
TGAGAAGCTGAGAGAAtcagggaggaatgaggagaaaggtTGAAAAGAAA
CAGTGGGTGAAGAGAACgagacgagggaagggatcCAAAGGATCGGGGTC
GGGAGTGTCTCTTTCGTGGCATGGTATGATTACGTACTATAGTGTATGAT
ATAGTATGTCCCTCGCTCACAtttgatctcctcctcgtccaaccCGTGCA
GTGCTTACGTGCGAAGCCCGTCCTTCGCGCAAGCCCAGAACAAAGGCTTC
ATGGCGAATTTTGACTACATTTCTGGTACGTCTTATCTCTGCTTTACGCT
TATACTTTGCAagctccccgccctgcctgaGTGCCCACACTCGCCTTTCC
GTCCTTGTCTCCCTGGACCAGGCGAGAATtccgagggggagaaaattCCC
ATGACCGCGCCCGTGACCTTCCGGAGGGCGCCCGACGACCAAGTCGGCTg
gctcgtctccttcttcgtgcCCTCCAAATACCCGAGTCGGGAGGAAGTCC
CCGCCCCCAAGGACGAGTCCATCTCCATCATGTCATTGGGGCCGGCCACC
TACGCCGTTCGTGTCTTCGATGGCTTCGCCACGTTCGGGTGAGGGGCATA
GGGATGTTCTCCCCCCTGTCTatgcgtcccccccctctaaGCCTCCCCCT
AACGTCCTCCCACCATTCTTTTCGCCGTCCTTCCAGGGACTTCGACAAGA
ACGAGTACGAGCTAAAAAAGGCCCTACTGGCCGATGGTGTCACACCCGTG
GAAGACGCAGAGAACGGTGTGCTTTGGGCGGGATATGACAGTCCGTTTGT
CTACGTGAACAGGCACAACGAGGTCTGGGTGCGCGTGGCTTGAACATAGA
GCTTGCAAAGGCAGAGAATCAGGAGTGGTTTTGACGATGTTCAAAGAGGA
AACGAAACGGGAATTGCTTGAACGTTGGAGGCGTAAGGCCAAAAGAAAGG
CTAACTGCGCTTGAAAAACGTGCGATgtaggaggggggaaagactgCCAC
GTGAGGAGGTTGGATGTAAGTACAGGTGGCCGGAATAAGACTTTGGGAGG
ATTTCAAGCGATTCCTGTGCGTTTATCTAGAATTTGGATCTGACGAAGAA
TATCAGGTGTACATGCACCTCATGAAGCACTCTTGAAATATATCGATATC
ACTCGAAAAATCGAAGAATCATACACGAAAGTCGGCACAAGGGGAACGTG
TTTAAATCGTTTACCTGGTCTGACGTCCCGCGTTTCATTCAGTTTAATTT
ATATTGTATACTTTTGTGGTGAGGAATGTAGCGCTTACAACAT

Coding sequence (CDS) from alignment at CM002467.1:738040..740282+

>rna6159 ID=rna6159|Name=rna6159|organism=Nannochloropsis gaditana|type=CDS|length=3315bp|location=Sequence derived from alignment at CM002467.1:738040..740282+ (Nannochloropsis gaditana)
ATGAATGCCCACAGGATCTGCTGCGTTCTATTCATTACGATTACAATGCC
CTCAACCTTTGCTTCCTTTACGGCCGTCCTCTTTTTCGCCTCTACGGTGG
CCGCTGAGGTTTGCCATCTCTATAGCTCTACCATTGAGTCCCCTTGCTTC
ACCCTACTTCGAAATGAGTCTGGTTACGAAGTTCGCGAGTaccggggaga
ggaaatgtGGACCagTGCTTACGTGCGAAGCCCGTCCTTCGCGCAAGCCC
AGAACAAAGGCTTCATGGCGAATTTTGACTACATTTCTGGCGAGAATtcc
gagggggagaaaattCCCATGACCGCGCCCGTGACCTTCCGGAGGGCGCC
CGACGACCAAGTCGGCTggctcgtctccttcttcgtgcCCTCCAAATACC
CGAGTCGGGAGGAAGTCCCCGCCCCCAAGGACGAGTCCATCTCCATCATG
TCATTGGGGCCGGCCACCTACGCCGTTCGTGTCTTCGATGGCTTCGCCAC
GTTCGGGGACTTCGACAAGAACGAGTACGAGCTAAAAAAGGCCCTACTGG
CCGATGGTGTCACACCCGTGGAAGACGCAGAGAACGGTGTGCTTTGGGCG
GGATATGACAGTCCGTTTGTCTACGTGAACAGGCACAACGAGGTCTGGGT
GCGCGTGGCTTGAATGAATGCCCACAGGATCTGCTGCGTTCTATTCATTA
CGATTACAATGCCCTCAACCTTTGCTTCCTTTACGGCCGTCCTCTTTTTC
GCCTCTACGGTGGCCGCTGAGGTTTGCCATCTCTATAGCTCTACCATTGA
GTCCCCTTGCTTCACCCTACTTCGAAATGAGTCTGGTTACGAAGTTCGCG
AGTaccggggagaggaaatgtGGACCagTGCTTACGTGCGAAGCCCGTCC
TTCGCGCAAGCCCAGAACAAAGGCTTCATGGCGAATTTTGACTACATTTC
TGGCGAGAATtccgagggggagaaaattCCCATGACCGCGCCCGTGACCT
TCCGGAGGGCGCCCGACGACCAAGTCGGCTggctcgtctccttcttcgtg
cCCTCCAAATACCCGAGTCGGGAGGAAGTCCCCGCCCCCAAGGACGAGTC
CATCTCCATCATGTCATTGGGGCCGGCCACCTACGCCGTTCGTGTCTTCG
ATGGCTTCGCCACGTTCGGGGACTTCGACAAGAACGAGTACGAGCTAAAA
AAGGCCCTACTGGCCGATGGTGTCACACCCGTGGAAGACGCAGAGAACGG
TGTGCTTTGGGCGGGATATGACAGTCCGTTTGTCTACGTGAACAGGCACA
ACGAGGTCTGGGTGCGCGTGGCTTGAATGAATGCCCACAGGATCTGCTGC
GTTCTATTCATTACGATTACAATGCCCTCAACCTTTGCTTCCTTTACGGC
CGTCCTCTTTTTCGCCTCTACGGTGGCCGCTGAGGTTTGCCATCTCTATA
GCTCTACCATTGAGTCCCCTTGCTTCACCCTACTTCGAAATGAGTCTGGT
TACGAAGTTCGCGAGTaccggggagaggaaatgtGGACCagTGCTTACGT
GCGAAGCCCGTCCTTCGCGCAAGCCCAGAACAAAGGCTTCATGGCGAATT
TTGACTACATTTCTGGCGAGAATtccgagggggagaaaattCCCATGACC
GCGCCCGTGACCTTCCGGAGGGCGCCCGACGACCAAGTCGGCTggctcgt
ctccttcttcgtgcCCTCCAAATACCCGAGTCGGGAGGAAGTCCCCGCCC
CCAAGGACGAGTCCATCTCCATCATGTCATTGGGGCCGGCCACCTACGCC
GTTCGTGTCTTCGATGGCTTCGCCACGTTCGGGGACTTCGACAAGAACGA
GTACGAGCTAAAAAAGGCCCTACTGGCCGATGGTGTCACACCCGTGGAAG
ACGCAGAGAACGGTGTGCTTTGGGCGGGATATGACAGTCCGTTTGTCTAC
GTGAACAGGCACAACGAGGTCTGGGTGCGCGTGGCTTGAATGAATGCCCA
CAGGATCTGCTGCGTTCTATTCATTACGATTACAATGCCCTCAACCTTTG
CTTCCTTTACGGCCGTCCTCTTTTTCGCCTCTACGGTGGCCGCTGAGGTT
TGCCATCTCTATAGCTCTACCATTGAGTCCCCTTGCTTCACCCTACTTCG
AAATGAGTCTGGTTACGAAGTTCGCGAGTaccggggagaggaaatgtGGA
CCagTGCTTACGTGCGAAGCCCGTCCTTCGCGCAAGCCCAGAACAAAGGC
TTCATGGCGAATTTTGACTACATTTCTGGCGAGAATtccgagggggagaa
aattCCCATGACCGCGCCCGTGACCTTCCGGAGGGCGCCCGACGACCAAG
TCGGCTggctcgtctccttcttcgtgcCCTCCAAATACCCGAGTCGGGAG
GAAGTCCCCGCCCCCAAGGACGAGTCCATCTCCATCATGTCATTGGGGCC
GGCCACCTACGCCGTTCGTGTCTTCGATGGCTTCGCCACGTTCGGGGACT
TCGACAAGAACGAGTACGAGCTAAAAAAGGCCCTACTGGCCGATGGTGTC
ACACCCGTGGAAGACGCAGAGAACGGTGTGCTTTGGGCGGGATATGACAG
TCCGTTTGTCTACGTGAACAGGCACAACGAGGTCTGGGTGCGCGTGGCTT
GAATGAATGCCCACAGGATCTGCTGCGTTCTATTCATTACGATTACAATG
CCCTCAACCTTTGCTTCCTTTACGGCCGTCCTCTTTTTCGCCTCTACGGT
GGCCGCTGAGGTTTGCCATCTCTATAGCTCTACCATTGAGTCCCCTTGCT
TCACCCTACTTCGAAATGAGTCTGGTTACGAAGTTCGCGAGTaccgggga
gaggaaatgtGGACCagTGCTTACGTGCGAAGCCCGTCCTTCGCGCAAGC
CCAGAACAAAGGCTTCATGGCGAATTTTGACTACATTTCTGGCGAGAATt
ccgagggggagaaaattCCCATGACCGCGCCCGTGACCTTCCGGAGGGCG
CCCGACGACCAAGTCGGCTggctcgtctccttcttcgtgcCCTCCAAATA
CCCGAGTCGGGAGGAAGTCCCCGCCCCCAAGGACGAGTCCATCTCCATCA
TGTCATTGGGGCCGGCCACCTACGCCGTTCGTGTCTTCGATGGCTTCGCC
ACGTTCGGGGACTTCGACAAGAACGAGTACGAGCTAAAAAAGGCCCTACT
GGCCGATGGTGTCACACCCGTGGAAGACGCAGAGAACGGTGTGCTTTGGG
CGGGATATGACAGTCCGTTTGTCTACGTGAACAGGCACAACGAGGTCTGG
GTGCGCGTGGCTTGA

Synonyms

Publications