EWM24530.1, cds6144 (CDS) Nannochloropsis gaditana

Overview
NameEWM24530.1
Unique Namecds6144
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:738251..738322 +
Alignment locationCM002467.1:738763..738905 +
Alignment locationCM002467.1:739191..739264 +
Alignment locationCM002467.1:739361..739577 +
Alignment locationCM002467.1:739676..739832 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24530.1
ProductRegulatory factor, effector, bacterial
Orig transcript idgnl|cribi|Naga_100427g3.10034.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:738251..738322 +
CM002467.1supercontigCM002467.1:738763..738905 +
CM002467.1supercontigCM002467.1:739191..739264 +
CM002467.1supercontigCM002467.1:739361..739577 +
CM002467.1supercontigCM002467.1:739676..739832 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom
IPR006917SOUL_haem-bd
Homology
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|585106037|gb|EWM24530.1| (Regulatory factor, effector, bacterial [Nannochloropsis gaditana])

HSP 1 Score: 457.603 bits (1176), Expect = 5.576e-163
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MNAHRICCVLFITITMPSTFASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVRVA 220
            MNAHRICCVLFITITMPSTFASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVRVA
Sbjct:    1 MNAHRICCVLFITITMPSTFASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVRVA 220          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|168068011|ref|XP_001785891.1| (predicted protein [Physcomitrella patens] >gi|162662445|gb|EDQ49300.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 118.242 bits (295), Expect = 2.817e-29
Identity = 76/213 (35.68%), Postives = 109/213 (51.17%), Query Frame = 0
Query:    6 ICCVLFITITMPSTFASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAV-RVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWV 217
            + CV    +    T       LF  S   ++ C    S IE+P  +++     YE+R+Y  +E+W    V + +F  A   GF   F++ISG+NS+  KI MT PV  +  PD   G+ V+FFVPS++ S  ++P P D  +       A  AV   F GF T  D++    ELKKAL  DG   ++  E+ V +AGY SPF + NR  EV V
Sbjct:   12 LACVALTVVDGARTLPESVLQLFGVSDKESDSCGPQVS-IETPQCSVVEKRDTYELRDYNVKEIWVETLVPNSTFEMASFTGFYRCFNFISGKNSKNMKIEMTGPVHIKPTPDAN-GYKVAFFVPSRFKSVNDLPTPSDPKVHFYEPEKAVTAVIGPFGGFPTNKDYEAKFEELKKALDKDG---LKYNESTVTYAGYSSPFQFKNRKQEVHV 219          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|761903116|ref|XP_011409767.1| (PREDICTED: heme-binding protein 2-like [Amphimedon queenslandica])

HSP 1 Score: 112.849 bits (281), Expect = 1.908e-27
Identity = 71/202 (35.15%), Postives = 98/202 (48.51%), Query Frame = 0
Query:   21 ASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDD--QVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVRVA 220
            AS    L  A+++ A     +   ++ P + +      YE+R Y  +  W    +R  SF QA ++ F   FDYISG NS+ +KIPM  PV  +  P D     + V FFVP  +  +   P P D  + +  L   T  V  F GF +  D  K+  E+K AL A GV  V D       A YDSPF  ++RHNEVW+  A
Sbjct:   10 ASLLFTLISAASLKASDPPSFCHGLDCPVYKVTGKMGKYEIRSYE-QSKWVGTVIRGDSFTQAGSQAFHMLFDYISGANSQNQKIPMAVPVATKVVPLDGSMYNFTVFFFVPFAF--QANTPTPSDPKVFVQVLPALTAYVDSFSGFESNDDLKKHTEEMKAALTAAGVQYVHDFS---FTAEYDSPFKIIDRHNEVWLVAA 205          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|302764652|ref|XP_002965747.1| (hypothetical protein SELMODRAFT_439222 [Selaginella moellendorffii] >gi|300166561|gb|EFJ33167.1| hypothetical protein SELMODRAFT_439222 [Selaginella moellendorffii])

HSP 1 Score: 117.472 bits (293), Expect = 1.053e-26
Identity = 78/215 (36.28%), Postives = 119/215 (55.35%), Query Frame = 0
Query:    9 VLFITITMPSTF-----ASFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVR-VFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWV 217
            VLF+ +T+ ST      + F  V+   S   +E C    S IE+P   +   ++GYE+R+Y   ++W    V + S++ A + GF   F YISG+N +GE I MTAPV      +++ G+ +SF+ PS++ S +++P P D+++  +     TYAV   F GF T  D++K    LK+AL  D    VE     V +AGY SPF +VNR  EV +
Sbjct:  606 VLFVALTIASTAVAAPSSGFEQVVELYSAEGSESCGPKLS-IETPHCKIEARKNGYELRKYPKGQVWVETLVANSSYSAAVSVGFYRLFYYISGKNEKGEVIEMTAPVLV-HPYEERGGYKISFYAPSRFKSHKDLPKPMDKNVKFLETREHTYAVSGPFGGFPTEPDYEKRLKALKEALDKDD---VEYNGEKVYYAGYSSPFEFVNRKQEVHL 815          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|1026763971|gb|OAE24892.1| (hypothetical protein AXG93_2931s1350 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 108.227 bits (269), Expect = 1.705e-25
Identity = 66/177 (37.29%), Postives = 98/177 (55.37%), Query Frame = 0
Query:   44 TIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAV-RVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVRV 219
            +IE+P  T+ +   G+E+R Y   ++W    V + S+ QA + GF   F +ISG+NS  E I MT PV  + AP+   GW ++FF PSKY S  +VP P D ++ I+S   +  AV  +F GF +  D+     +LK  L  D      D E+ +++AGY SPF   +R  EV V +
Sbjct:   54 SIETPVCTVEKKGDGFELRRYPAGQIWAETVVANSSYRQACSDGFYRCFYFISGKNSAKESIEMTGPVHIKPAPEAN-GWKIAFFTPSKYKSVADVPTPTDPNVKIVSTEESLVAVSNMFGGFPSERDYYTQWVKLKDEL--DSANLHYD-ESSLVFAGYSSPFEIFHRKQEVHVTI 226          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|302788160|ref|XP_002975849.1| (hypothetical protein SELMODRAFT_442995 [Selaginella moellendorffii] >gi|300156125|gb|EFJ22754.1| hypothetical protein SELMODRAFT_442995 [Selaginella moellendorffii])

HSP 1 Score: 112.079 bits (279), Expect = 8.140e-25
Identity = 77/215 (35.81%), Postives = 118/215 (54.88%), Query Frame = 0
Query:    9 VLFITITMPSTFA-----SFTAVLFFASTVAAEVCHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVR-VFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWV 217
            V+F+ +T+ S+        F  V+   S   +E C    S IE+P   +   ++GYE+R+Y   ++W    V + S++ A + GF   F YISG+N +GE I MTAPV      +++ G+ VSF+ PS++ S +++P P D+++  +     TYAV   F GF T  D++K    LK+AL  D    VE     V +AGY SPF +VNR  EV +
Sbjct:  520 VVFVALTIASSAVAAPSSGFEQVVQLYSAEGSESCGPKLS-IETPHCKIEARKNGYELRKYPEGQVWVETLVANSSYSAAVSVGFYRLFYYISGKNEKGEVIEMTAPVLV-HPYEERGGYKVSFYAPSRFKSHKDLPKPMDKNVKFLVTKEHTYAVSGPFGGFPTEPDYEKRLKALKEALDKDD---VEYNGEKVYYAGYSSPFEFVNRKQEVHL 729          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|390360004|ref|XP_797226.3| (PREDICTED: heme-binding protein 2 [Strongylocentrotus purpuratus])

HSP 1 Score: 104.76 bits (260), Expect = 3.012e-24
Identity = 69/205 (33.66%), Postives = 106/205 (51.71%), Query Frame = 0
Query:   24 TAVLFFASTVAAEVCHLYSST-------IESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFR----RAPDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLW-AGYDSPFVYVNRHNEVW 216
            + VL   ST      H+++         +E P FT +++  GYE R+Y  E  W S  + S S+  A ++GF   F+YI G N + +KI MTAPV  R    + P  +  + VSFF+P+++ +    PAP D  +   ++      V+ F GFA+  D+ +   EL +AL A     +   ++   + AGYDSPF   +RHNEVW
Sbjct:    6 STVLLLISTHMCLSAHVFTQDAPKFCKGLECPEFTTIQSSEGYEERQY-SESKWVSTEIMSMSYDSASSQGFERLFNYIEGNNEQKQKIAMTAPVATRVIPGQGPACESNFTVSFFIPAEHSANP--PAPSDSDVFFTTIPAHRAYVKSFGGFASQDDWIQAGAELGRALDA-----LHSYDSSYYYTAGYDSPFTIFSRHNEVW 202          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|1072258259|ref|XP_018414325.1| (PREDICTED: heme-binding protein 1-like [Nanorana parkeri])

HSP 1 Score: 103.99 bits (258), Expect = 4.513e-24
Identity = 66/180 (36.67%), Postives = 89/180 (49.44%), Query Frame = 0
Query:   41 YSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAP--DDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWVR 218
            +  + E P + +L+  + +EVR Y     W + Y+ S S      K F   F YISGENS+G  I M  PV     P  D  V   +S F+PS   S    P P D SI + S  P +Y VR F G+A   D++KN   L + L A G+    D + G + A Y+ P  +  RHNEVW R
Sbjct:   32 FCGSYECPRYQVLKKYNTFEVRRY-DSTFWVTTYLNSGSMGLGTMKSFRRLFKYISGENSQGISIKMNVPVRIT-VPLLDTNVNSTMSLFLPSALMSP---PTPNDPSIVLESFPPTSYYVRSFGGYAMTSDYEKNSKALSEELTALGL--AYDTQTG-MAAAYNDPLTFFGRHNEVWFR 203          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|340370234|ref|XP_003383651.1| (PREDICTED: heme-binding protein 1-like [Amphimedon queenslandica])

HSP 1 Score: 103.99 bits (258), Expect = 4.654e-24
Identity = 70/186 (37.63%), Postives = 93/186 (50.00%), Query Frame = 0
Query:   38 CHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRA--PDDQVGWLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYE----LKKALLADGVTPVEDAENGVLWAGYDSPFVYVNRHNEVWV 217
            CH     ++ P +T+ R    YE R+Y   + W    + S S++QA  +GF   FDYI G N +G KIPM +PV  +    P  Q  + V FFVP  Y S   +P   D ++SI SL   T  V  F G+ +    DK E E    LK A+   GV  V+        AGYD PF  + RHNEVW+
Sbjct:   28 CH----GLDCPKYTVTRKIDDYEERQYEPSK-WVGTTITSDSYSQATEEGFKKLFDYIEGANKDGIKIPMASPVAVKIVPLPQGQSNYTVLFFVPFAYQSNTSIPT--DPTLSIASLPALTAYVGQFGGYMS----DKVEQEETTKLKNAMTKYGVQFVQQYS---FAAGYDPPFRVIGRHNEVWL 199          
BLAST of EWM24530.1 vs. NCBI_GenBank
Match: gi|573902184|ref|XP_006638817.1| (PREDICTED: heme-binding protein 1-like [Lepisosteus oculatus])

HSP 1 Score: 103.605 bits (257), Expect = 1.029e-23
Identity = 74/185 (40.00%), Postives = 95/185 (51.35%), Query Frame = 0
Query:   38 CHLYSSTIESPCFTLLRNESGYEVREYRGEEMWTSAYVRSPSFAQAQNKGFMANFDYISGENSEGEKIPMTAPVTFRRAPDDQVG----WLVSFFVPSKYPSREEVPAPKDESISIMSLGPATYAVRVFDGFATFGDFDKNEYELKKALLADGVT--PVEDAENGVLWAGYDSPFVYVNRHNEVW 216
            CH     ++ P +TL++    +E R Y     W +  V   ++  A NKGFM  F YI G N  G KIPMTAPV     P    G      VSFFVP+K       P PKD +I  ++L  +T  VR F GFA+  D+ +N   L+  L A G++  PV       + AGYDSPF   NRHNEVW
Sbjct:   33 CH----KLDCPEYTLVKKHETFEERYYNASR-WMTTEVEG-NYKSAVNKGFMRLFYYIGGNNEAGIKIPMTAPVAVVVHPPTIDGNPKNISVSFFVPAK----SIPPKPKDLTIHELNLTGSTMYVRSFGGFASESDWTENAQALEADLKAAGISYDPVS-----YVAAGYDSPFRLFNRHNEVW 202          
The following BLAST results are available for this feature:
BLAST of EWM24530.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106037|gb|EWM24530.1|5.576e-163100.00Regulatory factor, effector, bacterial [Nannochlor... [more]
gi|168068011|ref|XP_001785891.1|2.817e-2935.68predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|761903116|ref|XP_011409767.1|1.908e-2735.15PREDICTED: heme-binding protein 2-like [Amphimedon... [more]
gi|302764652|ref|XP_002965747.1|1.053e-2636.28hypothetical protein SELMODRAFT_439222 [Selaginell... [more]
gi|1026763971|gb|OAE24892.1|1.705e-2537.29hypothetical protein AXG93_2931s1350 [Marchantia p... [more]
gi|302788160|ref|XP_002975849.1|8.140e-2535.81hypothetical protein SELMODRAFT_442995 [Selaginell... [more]
gi|390360004|ref|XP_797226.3|3.012e-2433.66PREDICTED: heme-binding protein 2 [Strongylocentro... [more]
gi|1072258259|ref|XP_018414325.1|4.513e-2436.67PREDICTED: heme-binding protein 1-like [Nanorana p... [more]
gi|340370234|ref|XP_003383651.1|4.654e-2437.63PREDICTED: heme-binding protein 1-like [Amphimedon... [more]
gi|573902184|ref|XP_006638817.1|1.029e-2340.00PREDICTED: heme-binding protein 1-like [Lepisosteu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6159rna6159Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications