rna6149, rna6149 (mRNA) Nannochloropsis gaditana

Overview
Namerna6149
Unique Namerna6149
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1782
Alignment locationCM002467.1:701026..702354 -

Link to JBrowse

Properties
Property NameValue
Productterbinafine resistance locus protein
Orig transcript idgnl|cribi|Naga_100175g1.9490.mrna
Orig protein idgnl|cribi|Naga_100175g1.9490
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:701026..702354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100175g1gene5940Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6149rna6149-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24535.1cds6134Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6149 ID=rna6149|Name=rna6149|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp
CGCAGACGCACGATCGCGGACTCGGAATACCCTCCCCGGGCGAGCGCCGT
GCTTCCGTCCCTGATTTTGATTCTACACAGAGGCGAAACATCCACTTATT
CTTTCCGCCTCAAATACACGGTACAGGCGTTTCTCGGCACTCACATTCTT
CCTTCATGAGCATACAGGGCATGATTTGAGGGCTGGGGTCTGAACGCGCG
GGAGGATGCATTGCTTTCCCTGCGGTTTCGAGAGCTCCCAAAGGCCTATC
CGTTAGCATCATCGTCCAGAGTTTTCCAGGCCAGAGAGTCTGTCTTGCCC
GCCCGTCGCACATTTAGCCACGACTGTTCTAGGGCGCAGACAATGCACAA
GACCGGTTGAAATATATGCGTGGGTTCGACGCCTGTGGCATGTTGGTAGT
AGCCTGGGTAGCCAGTCCGCTAAAGGTCCTATGAGCCGCGACCTTCTGTG
GGCTACTTTTCACACTGCCGTTCCGCATCATCTGCCATGTGGCATTTGTG
TGACACGCAAGTGGTCCGTGTCATGCGTGAATGCGGTTTATGTGGGCGCT
GATCTATTTAAAGTCCCCACAGCGTACTGCATGTGACCGTCTATGCGCCA
TGTATCTTAGGATAACTCCGTGCTTATTAAAGGATCTTGCGAGTGTATCG
ATCGCACCGTCACTTGTCTGACCACATACAACTGTTGATCGAAAAAATTG
CTCCTAACCGATGCCCTGACAAGCCCAATATCATGTGGGAATCGCCCAAA
GTCGAAAAGCGAGGCTTACCACGCTCGACAGGGAGGAGAGAGTCCTTGTC
GCTTCAATTCCAGTTTTTGTTCACAAGCTCAAACGTCTGTGAGGGCTCCT
GCCAGGCCTCGAACTCCTTGCTTTCGGACGCCAGGCTCTCTCACCTTCCC
CCTATCTCACTCCTTTGTCTAGCAGGCGCTTCCGGATGAATTTGTTTGGG
AAGAAGAAGACGGCAGGGCCGCCCCCGAATCCTGGGGACGCCATCATCAA
GCTTCGCGGCACGATGGAAACCTTAACCAAGCGGGAGGCGTACATTTCCA
AGAAGATGGACATGATGGTGAGGGAGGCCAAGGGGAAAATGGCGCGAAAG
GATAAAAACGGGGCCCTCTTTGCCTTGAAAAAGAAGAAGATGTACGAGGC
AGAAGTGATCAAGATTCAGGGGGCGATGATGAATTTGGAAAGTCAGGCGA
TGTCCTTGGAAGGGTCGGCGACCAACATGGAGGTGTTCGGGGCCATGAGG
ACGGGCGCCAAGGCAATGGGGGCAATGCGGGGCGCCATGGACGTGGACAA
GGTGGACGACTTGGTGGATGACATCCGGGAAGAGATGGACACAGCCACCC
ACATCTCCGAGGCCATCTCCACCCCCTTGGACGGGGGCTTGCAGGACGAC
GACGACCTGCTGGCGGAACTGGACGCGATGGTGGAGGAGGAAACGGAGGC
GAAGCTGACGCAAGTCCCAGCGTCACTGCCGGTTAAACCCGGGATGGCGG
AAACGGCTCCCGAGCCGTTTCCGGAATTACCGGCCGTCCCTACGAACAAG
CCAGTGGCAAGTCCGGGACTGGAGGCGTTGGAGGGCGTGGACGAGGAGGA
GCTAAGGGCGTTGAAGGAATTAGAGCAGAGCATGGCGGTGTAGGGGGTAG
GGGAGGAGGGAGGGACGGAGGACGGGAAGGAGGGAGGAAGGGAGGGAGGG
GGGCAAGGAGTGGTACATAGTGGGAAGGGGTTGTGTTACGGGTTAACGTG
AACAAAGAACAAGAAATTCGAGAACGGCATCG
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protein sequence of rna6149

>rna6149-protein ID=rna6149-protein|Name=rna6149|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQV
VLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAV
FFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLF
PGPRSARFYDS
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mRNA from alignment at CM002467.1:701026..702354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6149 ID=rna6149|Name=rna6149|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp|location=Sequence derived from alignment at CM002467.1:701026..702354- (Nannochloropsis gaditana)
AGGTATAAATTCATCCCTCTCTTTGTGTACGCACCCTGCAGAGACCTCTC
AAAAAGGGGGCCGAAATACGACGCTCCCTTAGTTGTACCATAAAGATGAT
GAGCGCTGCCCAGCAGCAAGCTCATGGGCAGCAGAATTCGCAGTATGTAG
GGCAGATGGACGGACAAAATTCCATGACCTTGGACGAGCCCGTCTGGCAG
ACCGTGGTAAGTTCGAGAGCACATCAGGAGGGACCTGTCCATGAAGCATT
AGCACAGATGATGATGTGTGCGTACATATTTTTGCGCTGGAAGCACGGGG
TGGCAGGGAAGTATGGTACATCACTGGGGTGGGGGAACGGGTAAGGGTAC
CCGTTGACCAGAATGCTGCAGTGATGCAAAAAGAGGAAATGAAAGCTTGT
AGAAAAAGGGGTTGACAAGGACACAGGTACCACTTTCAGACCGGATACCG
GCGTGGTCCAAGCAGTGTCTTTGCATCATAGAATGCTGATGGAATGAGGG
CTGGTAACTGCGAGGATGTGCGTGGTCCGTGCAGCAGATCTGTGCTGCAT
GATTATGTTGATTTTAAACCGGGGCAAAACTCAATCTGGGCACACGGTGG
GAGAATTGAGATACCAAAGGATGGTGCGATTCCTTCACCCACACGGCCTT
ATCCCCCGCCCCCATCGTGTGCCCCCACACCGTCTCTACAGAAAAGAGAC
TTGACACAAGTGGGCTCCAAGCTGCAGGTGGTGCTCCTCCCAAGGGAAAA
CCAGGACGGGGTCCTGAAGAAGCTGAAAGACTGTACGTGCAGGAGGGAGA
AGGGGAGGGCGGGAGGGAGGAAGGTCGAGCGCGGGAGGCCGTCGGGAGGG
AGGAGGATGGAGGCAGAAGATTCCACGCGAGGGAGGAAATGATGACGGGG
GAGGTGGAAATGGTTTTACCGTGTAGACTCTCCGCCCCCCCGTTGATGCA
CCACACTCACATCCTGCCCGCCCCTCCCCTCCGCCCCTGCCTCCGCCCCT
GCCTCCGCCCCTGCCTCCCAGGGGACCTCTGGGGCCCTCTCCTGGTCTGC
CTGACGCTCTCCATCCTCTTGAGCATCACGGCCCCAGAGGAGCAGGGCGC
CTTGGTCTTTGCCGCTGTCTTCTTTGTCGTCTGGTTCGGCGCCGCCGTGG
TCACCATGAACGCGCAGCTCTTGGGAGGGACCATGTGCGTGCTGGAGGGA
GGGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAGCGTGGAGGGACTTGTCA
TGTCTGTCTTGGCTTGTTCCCAGGCCCGCGTAGCGCCCGGTTCTATGATT
CTTAGCCTCCCTCCCCCTTACCGCCACCA
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Coding sequence (CDS) from alignment at CM002467.1:701026..702354-

>rna6149 ID=rna6149|Name=rna6149|organism=Nannochloropsis gaditana|type=CDS|length=1458bp|location=Sequence derived from alignment at CM002467.1:701026..702354- (Nannochloropsis gaditana)
GGGACCTCTGGGGCCCTCTCCTGGTCTGCCTGACGCTCTCCATCCTCTTG
AGCATCACGGCCCCAGAGGAGCAGGGCGCCTTGGTCTTTGCCGCTGTCTT
CTTTGTCGTCTGGTTCGGCGCCGCCGTGGTCACCATGAACGCGCAGCTCT
TGGGAGGGACCATGTGCGTGCTGGAGGGAGGGAAGGAGGGAGGGAGGGAG
GGAAGGAGGGAGCGTGGAGGGACTTGTCATGTCTGTCTTGGCTTGTTCCC
AGGCCCGCGTAGCGCCCGGTTCTATGATTCTTAGAAAAGAGACTTGACAC
AAGTGGGCTCCAAGCTGCAGGTGGTGCTCCTCCCAAGGGAAAACCAGGAC
GGGGTCCTGAAGAAGCTGAAAGACTATGATGAGCGCTGCCCAGCAGCAAG
CTCATGGGCAGCAGAATTCGCAGTATGTAGGGCAGATGGACGGACAAAAT
TCCATGACCTTGGACGAGCCCGTCTGGCAGACCGTGGGGACCTCTGGGGC
CCTCTCCTGGTCTGCCTGACGCTCTCCATCCTCTTGAGCATCACGGCCCC
AGAGGAGCAGGGCGCCTTGGTCTTTGCCGCTGTCTTCTTTGTCGTCTGGT
TCGGCGCCGCCGTGGTCACCATGAACGCGCAGCTCTTGGGAGGGACCATG
TGCGTGCTGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAGCG
TGGAGGGACTTGTCATGTCTGTCTTGGCTTGTTCCCAGGCCCGCGTAGCG
CCCGGTTCTATGATTCTTAGAAAAGAGACTTGACACAAGTGGGCTCCAAG
CTGCAGGTGGTGCTCCTCCCAAGGGAAAACCAGGACGGGGTCCTGAAGAA
GCTGAAAGACTATGATGAGCGCTGCCCAGCAGCAAGCTCATGGGCAGCAG
AATTCGCAGTATGTAGGGCAGATGGACGGACAAAATTCCATGACCTTGGA
CGAGCCCGTCTGGCAGACCGTGGGGACCTCTGGGGCCCTCTCCTGGTCTG
CCTGACGCTCTCCATCCTCTTGAGCATCACGGCCCCAGAGGAGCAGGGCG
CCTTGGTCTTTGCCGCTGTCTTCTTTGTCGTCTGGTTCGGCGCCGCCGTG
GTCACCATGAACGCGCAGCTCTTGGGAGGGACCATGTGCGTGCTGGAGGG
AGGGAAGGAGGGAGGGAGGGAGGGAAGGAGGGAGCGTGGAGGGACTTGTC
ATGTCTGTCTTGGCTTGTTCCCAGGCCCGCGTAGCGCCCGGTTCTATGAT
TCTTAGAAAAGAGACTTGACACAAGTGGGCTCCAAGCTGCAGGTGGTGCT
CCTCCCAAGGGAAAACCAGGACGGGGTCCTGAAGAAGCTGAAAGACTATG
ATGAGCGCTGCCCAGCAGCAAGCTCATGGGCAGCAGAATTCGCAGTATGT
AGGGCAGATGGACGGACAAAATTCCATGACCTTGGACGAGCCCGTCTGGC
AGACCGTG
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Synonyms
Publications