EWM24535.1, cds6134 (CDS) Nannochloropsis gaditana

Overview
NameEWM24535.1
Unique Namecds6134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:702149..702259 -
Alignment locationCM002467.1:701573..701663 -
Alignment locationCM002467.1:701050..701333 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24535.1
Productterbinafine resistance locus protein
Orig transcript idgnl|cribi|Naga_100175g1.9490.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:702149..702259 -
CM002467.1supercontigCM002467.1:701573..701663 -
CM002467.1supercontigCM002467.1:701050..701333 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|585106043|gb|EWM24535.1| (terbinafine resistance locus protein [Nannochloropsis gaditana])

HSP 1 Score: 330.872 bits (847), Expect = 8.520e-115
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS 161
            MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS
Sbjct:    1 MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS 161          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027741|gb|ETI50652.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567993828|gb|ETL43997.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568023114|gb|ETL97178.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568053505|gb|ETM50332.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570990474|gb|ETP48426.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 131.724 bits (330), Expect = 1.499e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|570955241|gb|ETP20427.1| (hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 131.724 bits (330), Expect = 1.515e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|570331527|gb|ETO79475.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976])

HSP 1 Score: 131.724 bits (330), Expect = 1.515e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|695369967|ref|XP_009514188.1| (hypothetical protein PHYSODRAFT_284024 [Phytophthora sojae] >gi|348687099|gb|EGZ26913.1| hypothetical protein PHYSODRAFT_284024 [Phytophthora sojae])

HSP 1 Score: 131.724 bits (330), Expect = 1.567e-35
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 0
Query:    5 AQQQAHGQQNSQYVGQMDGQNSM------TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTM 122
            + ++    + +  V  + G  S+      TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG T+
Sbjct:    2 SDEEVKSSEPTAGVAMVSGSISLPSAEENTLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSTI 125          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|567965113|gb|ETK90586.1| (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 131.339 bits (329), Expect = 1.764e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|299116628|emb|CBN76253.1| (terbinafine resistance locus protein (yip1) [Ectocarpus siliculosus])

HSP 1 Score: 130.568 bits (327), Expect = 4.086e-35
Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEG 127
            TLDEPV +T+ RDL  VG+KL++VL PR +QDGVL KLKDWDLWGPL+VCLTLSI+LS++AP +QGALVFAAVF VVW GAA+VT+NAQLLGGT+   + 
Sbjct:   29 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQS 128          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027739|gb|ETI50650.1| (hypothetical protein F443_05808 [Phytophthora parasitica P1569] >gi|567993826|gb|ETL43995.1| hypothetical protein L916_05614 [Phytophthora parasitica] >gi|568023112|gb|ETL97176.1| hypothetical protein L917_05500 [Phytophthora parasitica] >gi|568053503|gb|ETM50330.1| hypothetical protein L914_05618 [Phytophthora parasitica] >gi|570955239|gb|ETP20425.1| hypothetical protein F441_05813 [Phytophthora parasitica CJ01A1] >gi|570990472|gb|ETP48424.1| hypothetical protein F442_05853 [Phytophthora parasitica P10297])

HSP 1 Score: 131.339 bits (329), Expect = 4.460e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|567965111|gb|ETK90584.1| (hypothetical protein L915_05675 [Phytophthora parasitica] >gi|570331525|gb|ETO79473.1| hypothetical protein F444_05856 [Phytophthora parasitica P1976])

HSP 1 Score: 131.339 bits (329), Expect = 4.557e-35
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG +M V  
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127          
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027742|gb|ETI50653.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|567993829|gb|ETL43998.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568023115|gb|ETL97179.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568053506|gb|ETM50333.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570331528|gb|ETO79476.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570990475|gb|ETP48427.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 129.413 bits (324), Expect = 5.143e-35
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTM 122
            TLDEPV  T+ RDL  VG KL+VVL+P    +  LK L+DWDLWGPLL+CLTLSI+LS+TAP  Q A+VF  VF V+W GAA+VT+NAQLLG ++
Sbjct:   29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSI 123          
The following BLAST results are available for this feature:
BLAST of EWM24535.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106043|gb|EWM24535.1|8.520e-115100.00terbinafine resistance locus protein [Nannochlorop... [more]
gi|566027741|gb|ETI50652.1|1.499e-3562.63hypothetical protein, variant 2 [Phytophthora para... [more]
gi|570955241|gb|ETP20427.1|1.515e-3562.63hypothetical protein, variant 2 [Phytophthora para... [more]
gi|570331527|gb|ETO79475.1|1.515e-3562.63hypothetical protein, variant 2 [Phytophthora para... [more]
gi|695369967|ref|XP_009514188.1|1.567e-3551.61hypothetical protein PHYSODRAFT_284024 [Phytophtho... [more]
gi|567965113|gb|ETK90586.1|1.764e-3562.63hypothetical protein, variant 2 [Phytophthora para... [more]
gi|299116628|emb|CBN76253.1|4.086e-3571.00terbinafine resistance locus protein (yip1) [Ectoc... [more]
gi|566027739|gb|ETI50650.1|4.460e-3562.63hypothetical protein F443_05808 [Phytophthora para... [more]
gi|567965111|gb|ETK90584.1|4.557e-3562.63hypothetical protein L915_05675 [Phytophthora para... [more]
gi|566027742|gb|ETI50653.1|5.143e-3563.16hypothetical protein, variant 3 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6149rna6149Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications