EWM24535.1, cds6134 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|585106043|gb|EWM24535.1| (terbinafine resistance locus protein [Nannochloropsis gaditana]) HSP 1 Score: 330.872 bits (847), Expect = 8.520e-115 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query: 1 MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS 161
MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS
Sbjct: 1 MMSAAQQQAHGQQNSQYVGQMDGQNSMTLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEGGKEGGREGRRERGGTCHVCLGLFPGPRSARFYDS 161
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027741|gb|ETI50652.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567993828|gb|ETL43997.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568023114|gb|ETL97178.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568053505|gb|ETM50332.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570990474|gb|ETP48426.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297]) HSP 1 Score: 131.724 bits (330), Expect = 1.499e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|570955241|gb|ETP20427.1| (hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 131.724 bits (330), Expect = 1.515e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|570331527|gb|ETO79475.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1976]) HSP 1 Score: 131.724 bits (330), Expect = 1.515e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|695369967|ref|XP_009514188.1| (hypothetical protein PHYSODRAFT_284024 [Phytophthora sojae] >gi|348687099|gb|EGZ26913.1| hypothetical protein PHYSODRAFT_284024 [Phytophthora sojae]) HSP 1 Score: 131.724 bits (330), Expect = 1.567e-35 Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 0
Query: 5 AQQQAHGQQNSQYVGQMDGQNSM------TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTM 122
+ ++ + + V + G S+ TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG T+
Sbjct: 2 SDEEVKSSEPTAGVAMVSGSISLPSAEENTLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSTI 125
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|567965113|gb|ETK90586.1| (hypothetical protein, variant 2 [Phytophthora parasitica]) HSP 1 Score: 131.339 bits (329), Expect = 1.764e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|299116628|emb|CBN76253.1| (terbinafine resistance locus protein (yip1) [Ectocarpus siliculosus]) HSP 1 Score: 130.568 bits (327), Expect = 4.086e-35 Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLEG 127
TLDEPV +T+ RDL VG+KL++VL PR +QDGVL KLKDWDLWGPL+VCLTLSI+LS++AP +QGALVFAAVF VVW GAA+VT+NAQLLGGT+ +
Sbjct: 29 TLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQS 128
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027739|gb|ETI50650.1| (hypothetical protein F443_05808 [Phytophthora parasitica P1569] >gi|567993826|gb|ETL43995.1| hypothetical protein L916_05614 [Phytophthora parasitica] >gi|568023112|gb|ETL97176.1| hypothetical protein L917_05500 [Phytophthora parasitica] >gi|568053503|gb|ETM50330.1| hypothetical protein L914_05618 [Phytophthora parasitica] >gi|570955239|gb|ETP20425.1| hypothetical protein F441_05813 [Phytophthora parasitica CJ01A1] >gi|570990472|gb|ETP48424.1| hypothetical protein F442_05853 [Phytophthora parasitica P10297]) HSP 1 Score: 131.339 bits (329), Expect = 4.460e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|567965111|gb|ETK90584.1| (hypothetical protein L915_05675 [Phytophthora parasitica] >gi|570331525|gb|ETO79473.1| hypothetical protein F444_05856 [Phytophthora parasitica P1976]) HSP 1 Score: 131.339 bits (329), Expect = 4.557e-35 Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTMCVLE 126
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG +M V
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSMYVFR 127
BLAST of EWM24535.1 vs. NCBI_GenBank
Match: gi|566027742|gb|ETI50653.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|567993829|gb|ETL43998.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568023115|gb|ETL97179.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568053506|gb|ETM50333.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570331528|gb|ETO79476.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570990475|gb|ETP48427.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297]) HSP 1 Score: 129.413 bits (324), Expect = 5.143e-35 Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0
Query: 28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTM 122
TLDEPV T+ RDL VG KL+VVL+P + LK L+DWDLWGPLL+CLTLSI+LS+TAP Q A+VF VF V+W GAA+VT+NAQLLG ++
Sbjct: 29 TLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWVGAAIVTINAQLLGSSI 123 The following BLAST results are available for this feature:
BLAST of EWM24535.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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