rna6148, rna6148 (mRNA) Nannochloropsis gaditana

Overview
Namerna6148
Unique Namerna6148
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1375
Alignment locationCM002467.1:698427..700460 +

Link to JBrowse

Properties
Property NameValue
Productcharged multivesicular body protein 4b
Orig transcript idgnl|cribi|Naga_100260g1.1400.mrna
Orig protein idgnl|cribi|Naga_100260g1.1400
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:698427..700460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100260g1gene5939Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6148rna6148-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24544.1cds6133Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6148 ID=rna6148|Name=rna6148|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp
ATGCGTGTGACTGCGCAACTTGTGAGGCCCTTCACATACTGTATACATAA
GAGAGCGAGTGGCGTCCTTCGTGGAAGCGGGAGGAGATTTGCGAGCGGGT
GTACGCCTATTACTGAGACAAGCACCGCGAGGATGGAAAGCCTCACCCGG
ATTGTTACAAATACCCTCAGAAACCCAGGAGGAGTCACGAAACTGTGGTC
TTTTTCTTTGGCCGATCCCTCTCAAGGAAGACGGGAACGACCACATAAGC
TCGTCCTCCGCCACAACAAACTCTCGGGGACGCGCTTCGTGGTCTTGGAC
GGCATTGAGGTGCCCGGCACCCGGGGCACGACTTCCCTATTGAACGCAGT
GGAGATATTGTTCAAGGTCGATGACGCTACCGCCACCGTGAGCATTACCC
CAGACCTGGGTGCGGGCGGGTTTATATATAGCTGTCGCGTGGGAGCTCGA
CTCTTGACCGAGCAGGCGGATGTATTGGAGGTCTCCGACATGGGTAGCAG
TCTCCCGCACATGGAGGACGTGGGCGGTGCCGCCAATGGGAGCGGTAACG
GTCACGAGGCAGGGCGGGTGCCTGTGCGCGTGATGGTCCCGGAGTTCCGG
ACGCAATCCAGCGAAGGGAAGCTCATTGTGCATTACAAGGTGGTTTGCAC
CCTTTCAGGGGCGGGGCGGGCGGGCGGGAAGGAGGGAGGGAGGGAGGGAG
GGGAGGAGGGAGGGAAGGAGGGAGAGGTGGTGGTGTTCCGCAGGTACCGG
GACTTTGATAAGCTGGATCGACTCGTGCGCTCCGCCTTCGCGGGCTCCCA
CCTGTTGAGCAGCCTTCCCTCCCTCCCCATCAAGGTCCTGAACCCCTTTG
CCGATCAGTCCGACCCGCTCTTTATCGAACATCGCCGTCAGGAGTTGGAG
GTCTACCTCCAGCGGTTGATACGTATGCCCAAGGCCTCCCATAACCCAGA
TTTGCTCCGATTTTTCTCGTTGCATCCGGTGACAGGACAGCCGTTAGATC
CAGGCGACTTGAACTTGCATGTGGAGCTGCGATTCTGACGGTGGAGGGGA
TGGAAGGGTCCGAGGAACGGGCGTAGGAGGGGGCGGAGGGAGGGAGGGAG
GGAAGGAGGGAGGGAGGGAAGGAGGGAGGATCGTGGTGTACAGAGAGAGA
GGGGGGCGCGTGGGTCTGTCGCTGGAGGCTTTGTGTGGTCCTGCTCGCTT
CCCCGGGGATCGTCTCCTGTTTTCCCGCCCAGTGGACGGCCATGGGAACA
ATCCCGGGGGCGTGAGAGTCATGAAGACTGTGTTGATACGTGTACATTGA
TCGAGTCGGGGCGGTTTTGATAGTAAACACGGAATGCATTGACGTAATGT
AAGGGCCCCGCCCACGTGAAGGCGC
back to top

protein sequence of rna6148

>rna6148-protein ID=rna6148-protein|Name=rna6148|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKG
KMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEV
FGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDG
GLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPA
VPTNKPVASPGLEALEGVDEEELRALKELEQSMAV
back to top

mRNA from alignment at CM002467.1:698427..700460+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6148 ID=rna6148|Name=rna6148|organism=Nannochloropsis gaditana|type=mRNA|length=2034bp|location=Sequence derived from alignment at CM002467.1:698427..700460+ (Nannochloropsis gaditana)
CGCAGACGCACGATCGCGGACTCGGAATACCCTCCCCGGGCGAGCGCCGT
GCTTCCGTCCCTGATTTTGATTCTACACAGAGGCGAAACATCCACTTATT
CTTTCCGCCTCAAATACACGGTACAGGCGTTTCTCGGCACTCACATTCTT
CCTTCATGAGCATACAGGGCATGATTTGAGGGCTGGGGTCTGAACGCGCG
GGAGGATGCATTGCTTTCCCTGCGGTTTCGAGAGCTCCCAAAGGCCTATC
CGTTAGCATCATCGTCCAGAGTTTTCCAGGCCAGAGAGTCTGTCTTGCCC
GCCCGTCGCACATTTAGCCACGACTGTTCTAGGGCGCAGACAATGCACAA
GACCGGTTGAAATATATGCGTGGGTTCGACGCCTGTGGCATGTTGGTAGT
AGCCTGGGTAGCCAGTCCGCTAAAGGTCCTATGAGCCGCGACCTTCTGTG
GGCTACTTTTCACACTGCCGTTCCGCATCATCTGCCATGTGGCATTTGTG
TGACACGCAAGTGGTCCGTGTCATGCGTGAATGCGGTTTATGTGGGCGCT
GATCTATTTAAAGTCCCCACAGCGTACTGCATGTGACCGTCTATGCGCCA
TGTATCTTAGGATAACTCCGTGCTTATTAAAGGATCTTGCGAGTGTATCG
ATCGCACCGTCACTTGTCTGACCACATACAACTGTTGATCGAAAAAATTG
CTCCTAACCGATGCCCTGACAAGCCCAATATCATGTGGGAATCGCCCAAA
GTCGAAAAGCGAGGCTTACCACGctcgacagggaggagagagtcCTTGTC
GCTTCAATTCCAGTTTTTGTTCACAAGCTCAAACGTCTGTGAGGGCTCCT
GCCAGGCCTCGAACTCCTTGCTTTCGGACGCCAGgctctctcaccttccc
cctaTCTCACTCCTTTGTCTAGCAGGCGCTTCCGGATGAATTTGtttggg
aagaagaagacggcaGGGCCGCCCCCGAATCCTGGGGACGCCATCATCAA
GCTTCGCGGCACGATGGAAACCTTAACCAAGCGGGAGGCGTACATTTCCA
AGAAGATGGACAtgatggtgagggaggccaaggggaaaatggcgcgaaag
gatAAAAACGgggccctctttgccttgaaaaagaagaagatgtACGAGGC
AGAAGTGATCAAGATTCAGGGGGCGATGATGAATTTGGAAAGTCAGGCGA
TGTCCTTGGAAGGGTCGGCGACCAACATGGAGGTGTTCGGGGCCATGAGG
Tacgtcgctttcctccctccctccctccctccctccctccctttttcctt
ccctccctctttattTTGATGTCATTGTCATTGAATGAGAGGTGGAGTCC
GGCGTGAAAGCGGGGAGGTGCAACCGGTCCTGCCGCGCTTCATGCAAATG
AGGCAACCCCTTTGCCCTGTCCTGGGTCGCGGACCTCCTTGTGCACATGT
TCGCTTGGCACGGATATTTTTCATTGATGCATCTCTGCACGCTCCTTGCA
GGACGGGCGCCAAGGCAATGGGGGCAATGCGGGGcgccatggacgtggac
aagGTGGACGACTTGGTGGATGACATCCGGGAAGAGATGGACACAGCCAC
CCACATCTCCGAGGCCATCTCCACCCCCTTGGACGGGGGCTTgcaggacg
acgacgacctGCTGGCGGAACTGGACgcgatggtggaggaggaaacggag
gcgaAGCTGACGCAAGTCCCAGCGTCACTGCCGGTTAAACCCGGGATGGC
GGAAACGGCTCCCGAGCCGTTTCCGGAATTACCGGCCGTCCCTACGAACA
AGCCAGTGGCAAGTCCGGGActggaggcgttggagggcgtggacgaggag
gagctaaGGGCGTTGAAGGAATTAGAGCAGAGCATGGCGGTGtagggggt
aggggaggagggagggacggaggacgggaaggagggaggaagggagggag
gggggcaaggagtgGTACATAGTGGGAAGGGGTTGTGTTACGGGTTAACG
TGAACAAAGAACAAGAAATTCGAGAACGGCATCG
back to top

Coding sequence (CDS) from alignment at CM002467.1:698427..700460+

>rna6148 ID=rna6148|Name=rna6148|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002467.1:698427..700460+ (Nannochloropsis gaditana)
ATGAATTTGtttgggaagaagaagacggcaGGGCCGCCCCCGAATCCTGG
GGACGCCATCATCAAGCTTCGCGGCACGATGGAAACCTTAACCAAGCGGG
AGGCGTACATTTCCAAGAAGATGGACAtgatggtgagggaggccaagggg
aaaatggcgcgaaaggatAAAAACGgggccctctttgccttgaaaaagaa
gaagatgtACGAGGCAGAAGTGATCAAGATTCAGGGGGCGATGATGAATT
TGGAAAGTCAGGCGATGTCCTTGGAAGGGTCGGCGACCAACATGGAGGTG
TTCGGGGCCATGAGGACGGGCGCCAAGGCAATGGGGGCAATGCGGGGcgc
catggacgtggacaagGTGGACGACTTGGTGGATGACATCCGGGAAGAGA
TGGACACAGCCACCCACATCTCCGAGGCCATCTCCACCCCCTTGGACGGG
GGCTTgcaggacgacgacgacctGCTGGCGGAACTGGACgcgatggtgga
ggaggaaacggaggcgaAGCTGACGCAAGTCCCAGCGTCACTGCCGGTTA
AACCCGGGATGGCGGAAACGGCTCCCGAGCCGTTTCCGGAATTACCGGCC
GTCCCTACGAACAAGCCAGTGGCAAGTCCGGGActggaggcgttggaggg
cgtggacgaggaggagctaaGGGCGTTGAAGGAATTAGAGCAGAGCATGG
CGGTGtagATGAATTTGtttgggaagaagaagacggcaGGGCCGCCCCCG
AATCCTGGGGACGCCATCATCAAGCTTCGCGGCACGATGGAAACCTTAAC
CAAGCGGGAGGCGTACATTTCCAAGAAGATGGACAtgatggtgagggagg
ccaaggggaaaatggcgcgaaaggatAAAAACGgggccctctttgccttg
aaaaagaagaagatgtACGAGGCAGAAGTGATCAAGATTCAGGGGGCGAT
GATGAATTTGGAAAGTCAGGCGATGTCCTTGGAAGGGTCGGCGACCAACA
TGGAGGTGTTCGGGGCCATGAGGACGGGCGCCAAGGCAATGGGGGCAATG
CGGGGcgccatggacgtggacaagGTGGACGACTTGGTGGATGACATCCG
GGAAGAGATGGACACAGCCACCCACATCTCCGAGGCCATCTCCACCCCCT
TGGACGGGGGCTTgcaggacgacgacgacctGCTGGCGGAACTGGACgcg
atggtggaggaggaaacggaggcgaAGCTGACGCAAGTCCCAGCGTCACT
GCCGGTTAAACCCGGGATGGCGGAAACGGCTCCCGAGCCGTTTCCGGAAT
TACCGGCCGTCCCTACGAACAAGCCAGTGGCAAGTCCGGGActggaggcg
ttggagggcgtggacgaggaggagctaaGGGCGTTGAAGGAATTAGAGCA
GAGCATGGCGGTGtag
back to top
Synonyms
Publications