EWM24544.1, cds6133 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|553187529|ref|XP_005854629.1| (charged multivesicular body protein 4 [Nannochloropsis gaditana CCMP526] >gi|422294427|gb|EKU21727.1| charged multivesicular body protein 4 [Nannochloropsis gaditana CCMP526] >gi|585106053|gb|EWM24544.1| charged multivesicular body protein 4b [Nannochloropsis gaditana]) HSP 1 Score: 464.922 bits (1195), Expect = 1.825e-165 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query: 1 MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV
Sbjct: 1 MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1173960943|gb|OQS07024.1| (hypothetical protein THRCLA_20241 [Thraustotheca clavata]) HSP 1 Score: 177.178 bits (448), Expect = 7.405e-52 Identity = 114/248 (45.97%), Postives = 150/248 (60.48%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQV--------PASLPVKPGMAETAPEPFPELPA-VPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MNLFG+K A P P + I KLR ++ L KRE++I KK++ + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q M+LE + NM+ F A+RTGA M A+ G M+VD VDD++DDI+EEM TA I AIS PL L DDD+L AELD +VEE+ E +L PA +P + + FPE P+ TN V+ D +EL L+ LE SMA+
Sbjct: 1 MNLFGRK-AAAPVKTGPAETAETIRKLREQLDILEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAAHQQPAPAQPARVPAQAPATAASMFTFPEAPSHAVTNIKVSGKA-------DADELEELRRLEASMAM 240
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|669165100|ref|XP_008618112.1| (hypothetical protein SDRG_13792 [Saprolegnia diclina VS20] >gi|530730222|gb|EQC28464.1| hypothetical protein SDRG_13792 [Saprolegnia diclina VS20]) HSP 1 Score: 177.178 bits (448), Expect = 8.729e-52 Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKL-----TQVPASLPVKPGMAETAPE------PFPELPAVP-TNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MN FG+K A P P + I KLR ++TL KRE++I KK++ + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q ++LE + NM+ F A+RTGA M A+ G M+VD VDD++DDI+EEM TA I AIS PL L DDD+L AEL++M++EE E +L T + PV+P FP+ P P TN V+ D +EL L+ LE SMA+
Sbjct: 1 MNFFGRK-AAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTHAQVAQPVRPTPVAAPAVPAPSMFAFPDAPTHPVTNIKVSGKA-------DADELEELRRLEASMAM 243
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|813189287|ref|XP_012207532.1| (hypothetical protein SPRG_13145 [Saprolegnia parasitica CBS 223.65] >gi|641527442|gb|KDO21729.1| hypothetical protein SPRG_13145 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 173.326 bits (438), Expect = 3.049e-50 Identity = 112/251 (44.62%), Postives = 150/251 (59.76%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKL-----TQVPASLPVKPGMAETAPE------PFPELPAVP-TNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MN FG+K A P P + I KLR ++TL KRE++I KK++ + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q ++LE + NM+ F A+RTGA M A+ G M+VD VDD++DDI+EEM TA I AIS PL L DDD+L AEL++M++EE E +L T + P +P FP+ P P TN V+ D +EL L+ LE SMA+
Sbjct: 1 MNFFGRK-AAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTPTQVAQPARPTPVAAPAVPAPSMFAFPDAPTHPVTNIKVSGKA-------DADELEELRRLEASMAM 243
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|698807892|ref|XP_009836975.1| (hypothetical protein H257_11676 [Aphanomyces astaci] >gi|574108040|gb|ETV73549.1| hypothetical protein H257_11676 [Aphanomyces astaci]) HSP 1 Score: 172.94 bits (437), Expect = 3.098e-50 Identity = 115/244 (47.13%), Postives = 150/244 (61.48%), Query Frame = 0
Query: 1 MNLFGKKKTAGPPPNPGDA---IIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDL---LAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEP---FPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MNLFG+K A +P D I KLR ++TL KREA+I KKM++ + EAK K A KDK GA+F LK+KKMYE+EV K+QGA M LE+Q M+LE + NM F A+R+GA M A+ G M+VD VDD++DDI+EEM TA I AIS PL L D+D+L L ELD + EE +L P + PV+ A +P LP VPT+ A ++ D +EL L+ LE SMA+
Sbjct: 1 MNLFGRKAPAPVRTSPADTAETIRKLREQLDTLEKREAHIEKKMELQLDEAKKKSAAKDKRGAIFCLKRKKMYESEVEKLQGARMTLETQVMTLESTQVNMATFTALRSGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDEDELEQQLRELDDLAMEE---QLAASPVAAPVQARPQTVAQQPAQAMFNLPEVPTH---AVSQVKVTGKADADELEELRRLEASMAM 238
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1173932091|gb|OQR84206.1| (hypothetical protein ACHHYP_13730 [Achlya hypogyna]) HSP 1 Score: 170.244 bits (430), Expect = 4.518e-49 Identity = 113/250 (45.20%), Postives = 151/250 (60.40%), Query Frame = 0
Query: 1 MNLFGKKKTA---GPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEP-----------FPELPA-VPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MNLFG+K A P + I KLR ++TL KRE++I KK++ + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q M+LE + NM+ F A+RTGA M A+ G M+VD VDD++DDI+EEM TA I AIS PL L DDD+L AEL++M++ E E++L A+ P P FP+ P+ VPTN V+ D +EL L+ LE SMA+
Sbjct: 1 MNLFGRKAPAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDAELESQLDTAHAAPARPAAAQPARPTPVPAAAPATMFNFPDAPSHVPTNIKVSGKA-------DADELEELRRLEASMAM 243
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|301102039|ref|XP_002900107.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102259|gb|EEY60311.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 169.859 bits (429), Expect = 7.756e-49 Identity = 118/258 (45.74%), Postives = 154/258 (59.69%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFP-------------------ELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
MNLFG+K +A P P D I KLR +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE + NME F A+R+GA+ M ++ G M+VDKVD+++DDI+EEM TA I AIS PL L DDD+L EL M E E E K + A+ P + AP P LP VPT+ + + DE+EL AL++LE SMA+
Sbjct: 1 MNLFGRK-SAAPARTGPVATADTIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKSIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDDELEDELREMEELELEEKTLEPVAATPAETARVPAAPAAVPAAAAAATAPSAPPAPTAQYNLPDVPTH--AVESNINVVGNADEDELEALRKLEASMAL 255
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1214677700|gb|OWY98246.1| (hypothetical protein PHMEG_00031031 [Phytophthora megakarya]) HSP 1 Score: 168.318 bits (425), Expect = 3.831e-48 Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
MNLFG+K +A P P + I KLR +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE + NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA I AIS PL L DDD
Sbjct: 1 MNLFGRK-SAAPVRTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|570996199|gb|ETP52853.1| (hypothetical protein F442_02191 [Phytophthora parasitica P10297]) HSP 1 Score: 167.933 bits (424), Expect = 4.280e-48 Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
MNLFG+K +A P P + I KLR +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE + NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA I AIS PL L DDD
Sbjct: 1 MNLFGRK-SAAPARTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|567969813|gb|ETK94880.1| (hypothetical protein L915_02144 [Phytophthora parasitica] >gi|567998197|gb|ETL48274.1| hypothetical protein L916_02109 [Phytophthora parasitica] >gi|568027413|gb|ETM01368.1| hypothetical protein L917_02042 [Phytophthora parasitica] >gi|570335848|gb|ETO83796.1| hypothetical protein F444_02240 [Phytophthora parasitica P1976] >gi|570959887|gb|ETP24866.1| hypothetical protein F441_02208 [Phytophthora parasitica CJ01A1] >gi|970637090|gb|KUF81283.1| Vacuolar-sorting protein SNF7 [Phytophthora nicotianae]) HSP 1 Score: 167.933 bits (424), Expect = 4.280e-48 Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query: 1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
MNLFG+K +A P P + I KLR +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE + NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA I AIS PL L DDD
Sbjct: 1 MNLFGRK-SAAPARTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159 The following BLAST results are available for this feature:
BLAST of EWM24544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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