EWM24544.1, cds6133 (CDS) Nannochloropsis gaditana

Overview
NameEWM24544.1
Unique Namecds6133
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:699362..699675 +
Alignment locationCM002467.1:699928..700321 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24544.1
Productcharged multivesicular body protein 4b
Orig transcript idgnl|cribi|Naga_100260g1.1400.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:699362..699675 +
CM002467.1supercontigCM002467.1:699928..700321 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Homology
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|553187529|ref|XP_005854629.1| (charged multivesicular body protein 4 [Nannochloropsis gaditana CCMP526] >gi|422294427|gb|EKU21727.1| charged multivesicular body protein 4 [Nannochloropsis gaditana CCMP526] >gi|585106053|gb|EWM24544.1| charged multivesicular body protein 4b [Nannochloropsis gaditana])

HSP 1 Score: 464.922 bits (1195), Expect = 1.825e-165
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV
Sbjct:    1 MNLFGKKKTAGPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1173960943|gb|OQS07024.1| (hypothetical protein THRCLA_20241 [Thraustotheca clavata])

HSP 1 Score: 177.178 bits (448), Expect = 7.405e-52
Identity = 114/248 (45.97%), Postives = 150/248 (60.48%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQV--------PASLPVKPGMAETAPEPFPELPA-VPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MNLFG+K  A P    P    + I KLR  ++ L KRE++I KK++  + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q M+LE +  NM+ F A+RTGA  M A+ G M+VD VDD++DDI+EEM TA  I  AIS PL   L DDD+L AELD +VEE+ E +L           PA +P +      +   FPE P+   TN  V+          D +EL  L+ LE SMA+
Sbjct:    1 MNLFGRK-AAAPVKTGPAETAETIRKLREQLDILEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELDMLVEEDLEKQLDAAHQQPAPAQPARVPAQAPATAASMFTFPEAPSHAVTNIKVSGKA-------DADELEELRRLEASMAM 240          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|669165100|ref|XP_008618112.1| (hypothetical protein SDRG_13792 [Saprolegnia diclina VS20] >gi|530730222|gb|EQC28464.1| hypothetical protein SDRG_13792 [Saprolegnia diclina VS20])

HSP 1 Score: 177.178 bits (448), Expect = 8.729e-52
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKL-----TQVPASLPVKPGMAETAPE------PFPELPAVP-TNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MN FG+K  A P    P    + I KLR  ++TL KRE++I KK++  + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q ++LE +  NM+ F A+RTGA  M A+ G M+VD VDD++DDI+EEM TA  I  AIS PL   L DDD+L AEL++M++EE E +L     T    + PV+P               FP+ P  P TN  V+          D +EL  L+ LE SMA+
Sbjct:    1 MNFFGRK-AAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTHAQVAQPVRPTPVAAPAVPAPSMFAFPDAPTHPVTNIKVSGKA-------DADELEELRRLEASMAM 243          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|813189287|ref|XP_012207532.1| (hypothetical protein SPRG_13145 [Saprolegnia parasitica CBS 223.65] >gi|641527442|gb|KDO21729.1| hypothetical protein SPRG_13145 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 173.326 bits (438), Expect = 3.049e-50
Identity = 112/251 (44.62%), Postives = 150/251 (59.76%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKL-----TQVPASLPVKPGMAETAPE------PFPELPAVP-TNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MN FG+K  A P    P    + I KLR  ++TL KRE++I KK++  + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q ++LE +  NM+ F A+RTGA  M A+ G M+VD VDD++DDI+EEM TA  I  AIS PL   L DDD+L AEL++M++EE E +L     T    + P +P               FP+ P  P TN  V+          D +EL  L+ LE SMA+
Sbjct:    1 MNFFGRK-AAAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVITLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDEELEKQLDSSRPTPTQVAQPARPTPVAAPAVPAPSMFAFPDAPTHPVTNIKVSGKA-------DADELEELRRLEASMAM 243          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|698807892|ref|XP_009836975.1| (hypothetical protein H257_11676 [Aphanomyces astaci] >gi|574108040|gb|ETV73549.1| hypothetical protein H257_11676 [Aphanomyces astaci])

HSP 1 Score: 172.94 bits (437), Expect = 3.098e-50
Identity = 115/244 (47.13%), Postives = 150/244 (61.48%), Query Frame = 0
Query:    1 MNLFGKKKTAGPPPNPGDA---IIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDL---LAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEP---FPELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MNLFG+K  A    +P D    I KLR  ++TL KREA+I KKM++ + EAK K A KDK GA+F LK+KKMYE+EV K+QGA M LE+Q M+LE +  NM  F A+R+GA  M A+ G M+VD VDD++DDI+EEM TA  I  AIS PL   L D+D+L   L ELD +  EE   +L   P + PV+      A +P      LP VPT+   A   ++     D +EL  L+ LE SMA+
Sbjct:    1 MNLFGRKAPAPVRTSPADTAETIRKLREQLDTLEKREAHIEKKMELQLDEAKKKSAAKDKRGAIFCLKRKKMYESEVEKLQGARMTLETQVMTLESTQVNMATFTALRSGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDEDELEQQLRELDDLAMEE---QLAASPVAAPVQARPQTVAQQPAQAMFNLPEVPTH---AVSQVKVTGKADADELEELRRLEASMAM 238          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1173932091|gb|OQR84206.1| (hypothetical protein ACHHYP_13730 [Achlya hypogyna])

HSP 1 Score: 170.244 bits (430), Expect = 4.518e-49
Identity = 113/250 (45.20%), Postives = 151/250 (60.40%), Query Frame = 0
Query:    1 MNLFGKKKTA---GPPPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEP-----------FPELPA-VPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MNLFG+K  A     P    + I KLR  ++TL KRE++I KK++  + EAK K A KDK GA+F LK+KKMYE+E+ K+QGA M LE+Q M+LE +  NM+ F A+RTGA  M A+ G M+VD VDD++DDI+EEM TA  I  AIS PL   L DDD+L AEL++M++ E E++L    A+           P P           FP+ P+ VPTN  V+          D +EL  L+ LE SMA+
Sbjct:    1 MNLFGRKAPAPVKTGPAETAETIRKLREQLDTLEKRESHIEKKIEAQLEEAKKKSAAKDKRGAIFCLKRKKMYESEIEKLQGARMTLETQVMTLESTQVNMQTFTALRTGANQMKAIHGQMNVDSVDDIMDDIQEEMATADEIGRAISQPLGNALYDDDELAAELESMMDAELESQLDTAHAAPARPAAAQPARPTPVPAAAPATMFNFPDAPSHVPTNIKVSGKA-------DADELEELRRLEASMAM 243          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|301102039|ref|XP_002900107.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102259|gb|EEY60311.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 169.859 bits (429), Expect = 7.756e-49
Identity = 118/258 (45.74%), Postives = 154/258 (59.69%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDDDLLAELDAMVEEETEAKLTQVPASLPVKPGMAETAPEPFP-------------------ELPAVPTNKPVASPGLEALEGVDEEELRALKELEQSMAV 235
            MNLFG+K +A P    P    D I KLR  +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE +  NME F A+R+GA+ M ++ G M+VDKVD+++DDI+EEM TA  I  AIS PL   L DDD+L  EL  M E E E K  +  A+ P +      AP   P                    LP VPT+       +  +   DE+EL AL++LE SMA+
Sbjct:    1 MNLFGRK-SAAPARTGPVATADTIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKSIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDDELEDELREMEELELEEKTLEPVAATPAETARVPAAPAAVPAAAAAATAPSAPPAPTAQYNLPDVPTH--AVESNINVVGNADEDELEALRKLEASMAL 255          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|1214677700|gb|OWY98246.1| (hypothetical protein PHMEG_00031031 [Phytophthora megakarya])

HSP 1 Score: 168.318 bits (425), Expect = 3.831e-48
Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
            MNLFG+K +A P    P    + I KLR  +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE +  NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA  I  AIS PL   L DDD
Sbjct:    1 MNLFGRK-SAAPVRTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|570996199|gb|ETP52853.1| (hypothetical protein F442_02191 [Phytophthora parasitica P10297])

HSP 1 Score: 167.933 bits (424), Expect = 4.280e-48
Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
            MNLFG+K +A P    P    + I KLR  +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE +  NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA  I  AIS PL   L DDD
Sbjct:    1 MNLFGRK-SAAPARTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159          
BLAST of EWM24544.1 vs. NCBI_GenBank
Match: gi|567969813|gb|ETK94880.1| (hypothetical protein L915_02144 [Phytophthora parasitica] >gi|567998197|gb|ETL48274.1| hypothetical protein L916_02109 [Phytophthora parasitica] >gi|568027413|gb|ETM01368.1| hypothetical protein L917_02042 [Phytophthora parasitica] >gi|570335848|gb|ETO83796.1| hypothetical protein F444_02240 [Phytophthora parasitica P1976] >gi|570959887|gb|ETP24866.1| hypothetical protein F441_02208 [Phytophthora parasitica CJ01A1] >gi|970637090|gb|KUF81283.1| Vacuolar-sorting protein SNF7 [Phytophthora nicotianae])

HSP 1 Score: 167.933 bits (424), Expect = 4.280e-48
Identity = 89/160 (55.62%), Postives = 114/160 (71.25%), Query Frame = 0
Query:    1 MNLFGKKKTAGP----PPNPGDAIIKLRGTMETLTKREAYISKKMDMMVREAKGKMARKDKNGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEVFGAMRTGAKAMGAMRGAMDVDKVDDLVDDIREEMDTATHISEAISTPLDGGLQDDD 156
            MNLFG+K +A P    P    + I KLR  +E+L KRE +I KK+ + ++EAK K A KDK GA+FALK+KKMYEAEV K+QGA M LE+Q M+LE +  NME F A+R+GA+ M A+ G M+VDKVD+++DDI+EEM TA  I  AIS PL   L DDD
Sbjct:    1 MNLFGRK-SAAPARTGPVATAETIRKLREQLESLEKRELHIVKKIALQLQEAKQKSAAKDKRGAIFALKRKKMYEAEVEKLQGARMTLETQVMTLESAHVNMETFTALRSGAEQMKAIHGQMNVDKVDNIMDDIQEEMATADEIGRAISQPLGSQLYDDD 159          
The following BLAST results are available for this feature:
BLAST of EWM24544.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553187529|ref|XP_005854629.1|1.825e-165100.00charged multivesicular body protein 4 [Nannochloro... [more]
gi|1173960943|gb|OQS07024.1|7.405e-5245.97hypothetical protein THRCLA_20241 [Thraustotheca c... [more]
gi|669165100|ref|XP_008618112.1|8.729e-5245.02hypothetical protein SDRG_13792 [Saprolegnia dicli... [more]
gi|813189287|ref|XP_012207532.1|3.049e-5044.62hypothetical protein SPRG_13145 [Saprolegnia paras... [more]
gi|698807892|ref|XP_009836975.1|3.098e-5047.13hypothetical protein H257_11676 [Aphanomyces astac... [more]
gi|1173932091|gb|OQR84206.1|4.518e-4945.20hypothetical protein ACHHYP_13730 [Achlya hypogyna... [more]
gi|301102039|ref|XP_002900107.1|7.756e-4945.74conserved hypothetical protein [Phytophthora infes... [more]
gi|1214677700|gb|OWY98246.1|3.831e-4855.63hypothetical protein PHMEG_00031031 [Phytophthora ... [more]
gi|570996199|gb|ETP52853.1|4.280e-4855.63hypothetical protein F442_02191 [Phytophthora para... [more]
gi|567969813|gb|ETK94880.1|4.280e-4855.63hypothetical protein L915_02144 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6148rna6148Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications