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Properties
| Property Name | Value |
|---|
| Product | pairing protein 2 family protein |
| Orig transcript id | gnl|cribi|Naga_100260g5.1401.mrna |
| Orig protein id | gnl|cribi|Naga_100260g5.1401 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002467.1 | supercontig | CM002467.1:690903..692935 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6144 ID=rna6144|Name=rna6144|organism=Nannochloropsis gaditana|type=mRNA|length=947bp
GACAAGGCTGGAGGCACCCTCATGCCTGCTGGACCAGTCACCACAAACCA
GCAACGCGTTATCCATGCAATCATCCAGCGCTTGAAATGGCCTTCTTCGT
TTCAATGATGCACAGGGGCTCCGCAGAAGTACTTCGACATTCCGAGTGCC
ATTTTCCGCCATGGAGGGCTTCGCAAAGCTTCAGGCTACGGTGCAGGCGA
CGATAGAGACCCATTGTCCGGAGGTCGCACGTTGGGACAAAGACATGTCT
GGGGAGGGGCAAGACGAGGGCTCACGAGGCGTGTTGCCCACGTTGCGTGG
CGCAGAGGAGGCGCTTCAGTCAGCGCATGTCCGCTATTCCCGGGTCTCGC
ACCTGGTCGACGTGCAAAATCGGTACCGGCAAGACTGTGGGAAACTGAGC
GAGCGGGTCAAAGCCTTGTACGAGCAAGCCGCGGAGGAAGATGCGAACGG
GACGGACTTAAAGCGGCAAGAAATGCACGCACGGTCGATGGCCGTGTTTG
AGAAGGTCAAAGCCTTGACAGACCGCGTGCGCCGCGCCCAAGAGGCGTAC
CGGCGCCTGGGCATCGACGTGAGGGGTGGGGGAGGAGGGGAGGATGAAGG
ATTGGGAAAGGGAGTCGAGGGAGAGAGTTTAAGCCACCTCCGGCAGGAGG
TACGGGACCTGGGGGAGCGCCTCCGGCAAATCCGGTACGTCGCCGGGGAG
GAAGGCCTAGTGAATGGGCAAGAAGGGGAAGAAGAGGAAGAAAAGGACGA
GGACGAGGACGCCCCCCCCCCCCCTGCGACGGCTTACGGCACAGACTGAA
GGAGAGAGGGCCAGCCGGGATTAGAGTGCATCGGTGCAAGCAAAGAAAGC
GGGCGCCTGGGATGTCCAGCAAGATCATGTACGGACGCCTAGCAAAATTG
CGGGCGGGACATTGCAAATGCAGTGAAAGCAAACTATCCCCTTGTGC back to topprotein sequence of rna6144 >rna6144-protein ID=rna6144-protein|Name=rna6144|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MDSESDSEASSEEETQSSSEEEEEGEEEEEEEDEEEEEDEEEDENLDDAS
HSSGSQVSHPASGSKALKAPTQKRPGPAPGAGDKGKKRQASSSPASPALN
FSSKAAKAKSSNQKPDYPAKGMAKKKTGNSSKRGASDMEVEDGTIEAENS
PTIAAESTKECPDPASSSSHTPSEARDTKLTPGTSRAASSPPLPCPNADK
LTAAIEKPKARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQT
VLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQE
EKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLR
LKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAG
KRVIDIIDMMGIETDEEAGVSLPALGGGT back to topmRNA from alignment at CM002467.1:690903..692935+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6144 ID=rna6144|Name=rna6144|organism=Nannochloropsis gaditana|type=mRNA|length=2033bp|location=Sequence derived from alignment at CM002467.1:690903..692935+ (Nannochloropsis gaditana)
AAAGCGCCTCtcggaaagaagaagaagatagAAATGGACTCGGAAAGCGA
CTCTGAGGcaagcagcgaggaggaaacgcagtcgtcgagcgaggaggaag
aggaaggcgaagaggaagaggaggaggaagacgaagaggaagaggaagac
gaagaggaggacgaaaattTGGATGATGCTTCCCATTCCTCCGGTAGCCA
GGTTTCTCATCCGGCATCTGGCTCGAAAGCCCTCAAAGCGCCCACTCAAA
AGCGTCCCGGACCTGCCCCCGGCGCCGGggacaaaggaaaaaaaagacag
gCATCTTCCAGTCCGGCTTCCCCTGCCCTGAATTTCTCCAGTAAGGCAGC
CAAAGCAAAGTCGTCGAATCAAAAGCCTGACTACCCTGCCAAGGGCATGG
CAAAGAAGAAAACTGGCAACAGCAGCAAACGCGGTGCGAGTGATATGGAA
GTCGAAGACGGGACGATTGAAGCCGAAAATTCTCCGACCATCGCGGCTGA
AAGTACGAAAGAGTGCCCGgaccctgcctcttcctcctcccatacCCCCT
CCGAGGCGCGTGACACCAAATTGACACCGGGAACTAGCAgggctgcttcc
tccccccccctcccatgtcCCAACGCCGATAAGCTCACTGCAGCCATCGA
GAAGCCGAAAGCCCGGGCGGGGGATGCCAAAAGTGTCATCCTTGAGTACA
TGATTAACGCCGCGCGGCCTTACGGGTGGGTGGACTTTCCTgtgtctttc
ccctccttgctcgctTCTGGTTTTGACCCcacctgctctcctccctcctt
gaccaCTGATCGTGCgacttccctcttctttgcatTTCTTTTGCACACAG
GGCTCAGAATGTTTTTGACAACCTACACAAGACCATCGGCAAGGTAGGGT
gcgcgtgagggagggagggaggaaacgagggagtGTGGAAGACTTGGATG
AGGACATCGACCGACCCTGTGGCTGACTGCAATGCTGCAACgctgtcttt
ccctccctggaaTCCTCCCGGTTCTCTTCTCTTTGTTCAGGGCACCGTGC
AGACCGTGCTGGATCAACTCGCTGACAGTGGCGCCATCACCCGGAAAGAA
TTCGGGAAATCCAAGATATACGtggccccgcccccagccTTAGACCCGAC
AGAACTTGCCCGCGAAACGGCCGCGTTGGAAAGCCGGTGGAAGGCCTtgc
aggaagagaaaagccagtggacggggagaaaagggagcctggagggcgag
gtccgGAGGTTGAACCAGGGTCTGGACGATACTGCCTTGGAGACGGCCTT
GACGACATTAATAGCAGAAAATGCGGCGCGCGAGAAGACGCTGGAGAAAC
TCCGGctgaaagaagggaagcgaGAAGGCAGGGCGCCCATGGATAAGCTC
CAAATGAAGcgcttggaagaggaggtgggatcCTTCAGGAAGGTCTGGGC
CGCGCGCAAGCGACaggcgatggaggccgtggagtgCGTGGCcgacgggg
cggggaaaCGGGTGATCGACATCATCGATATGATGGGCATAGaaacggac
gaggaggcgggtgtcagcctccctgccttggGTGGAGGGACGTGAGGTGG
ACCGACCCTTTGGCTTGCATGGGCCACGGGGTTACATTGGGAGAAGTGAC
CGAAGGTGCCTCGGCATTTTTTTTTCGCTGTTCGGACGTCCGGGGATAGG
AGAAAATAATATGGAAAGTAGAGATGTAAAAAGCGGCTGGGGAGTGGAAA
GGAGAGTTGGATGTGGTGTGCAACGGGCCAAGAATGCCTGAGTGAGCATG
CGTGTTCGTATGTGAAATAGCGGTCGAAATCAGTACGCTATCAAAAGGCA
GCGACGTAATGGACACATGAAGCCTTCGAAAAGACagaggggtggaagaa
gttggaggacgggcacaCATCCTGACGGGCTTTTTGAAAACGTGAACACA
GCGCTATGTCGAGGACAATCAGCAAGGTTGATTGATTGATTGAgactgga
aaaaaaaagaaatgaCCACGACGGACGGGGTTA back to topCoding sequence (CDS) from alignment at CM002467.1:690903..692935+ >rna6144 ID=rna6144|Name=rna6144|organism=Nannochloropsis gaditana|type=CDS|length=3870bp|location=Sequence derived from alignment at CM002467.1:690903..692935+ (Nannochloropsis gaditana)
ATGGACTCGGAAAGCGACTCTGAGGcaagcagcgaggaggaaacgcagtc
gtcgagcgaggaggaagaggaaggcgaagaggaagaggaggaggaagacg
aagaggaagaggaagacgaagaggaggacgaaaattTGGATGATGCTTCC
CATTCCTCCGGTAGCCAGGTTTCTCATCCGGCATCTGGCTCGAAAGCCCT
CAAAGCGCCCACTCAAAAGCGTCCCGGACCTGCCCCCGGCGCCGGggaca
aaggaaaaaaaagacaggCATCTTCCAGTCCGGCTTCCCCTGCCCTGAAT
TTCTCCAGTAAGGCAGCCAAAGCAAAGTCGTCGAATCAAAAGCCTGACTA
CCCTGCCAAGGGCATGGCAAAGAAGAAAACTGGCAACAGCAGCAAACGCG
GTGCGAGTGATATGGAAGTCGAAGACGGGACGATTGAAGCCGAAAATTCT
CCGACCATCGCGGCTGAAAGTACGAAAGAGTGCCCGgaccctgcctcttc
ctcctcccatacCCCCTCCGAGGCGCGTGACACCAAATTGACACCGGGAA
CTAGCAgggctgcttcctccccccccctcccatgtcCCAACGCCGATAAG
CTCACTGCAGCCATCGAGAAGCCGAAAGCCCGGGCGGGGGATGCCAAAAG
TGTCATCCTTGAGTACATGATTAACGCCGCGCGGCCTTACGGGGCTCAGA
ATGTTTTTGACAACCTACACAAGACCATCGGCAAGGGCACCGTGCAGACC
GTGCTGGATCAACTCGCTGACAGTGGCGCCATCACCCGGAAAGAATTCGG
GAAATCCAAGATATACGtggccccgcccccagccTTAGACCCGACAGAAC
TTGCCCGCGAAACGGCCGCGTTGGAAAGCCGGTGGAAGGCCTtgcaggaa
gagaaaagccagtggacggggagaaaagggagcctggagggcgaggtccg
GAGGTTGAACCAGGGTCTGGACGATACTGCCTTGGAGACGGCCTTGACGA
CATTAATAGCAGAAAATGCGGCGCGCGAGAAGACGCTGGAGAAACTCCGG
ctgaaagaagggaagcgaGAAGGCAGGGCGCCCATGGATAAGCTCCAAAT
GAAGcgcttggaagaggaggtgggatcCTTCAGGAAGGTCTGGGCCGCGC
GCAAGCGACaggcgatggaggccgtggagtgCGTGGCcgacggggcgggg
aaaCGGGTGATCGACATCATCGATATGATGGGCATAGaaacggacgagga
ggcgggtgtcagcctccctgccttggGTGGAGGGACGTGAATGGACTCGG
AAAGCGACTCTGAGGcaagcagcgaggaggaaacgcagtcgtcgagcgag
gaggaagaggaaggcgaagaggaagaggaggaggaagacgaagaggaaga
ggaagacgaagaggaggacgaaaattTGGATGATGCTTCCCATTCCTCCG
GTAGCCAGGTTTCTCATCCGGCATCTGGCTCGAAAGCCCTCAAAGCGCCC
ACTCAAAAGCGTCCCGGACCTGCCCCCGGCGCCGGggacaaaggaaaaaa
aagacaggCATCTTCCAGTCCGGCTTCCCCTGCCCTGAATTTCTCCAGTA
AGGCAGCCAAAGCAAAGTCGTCGAATCAAAAGCCTGACTACCCTGCCAAG
GGCATGGCAAAGAAGAAAACTGGCAACAGCAGCAAACGCGGTGCGAGTGA
TATGGAAGTCGAAGACGGGACGATTGAAGCCGAAAATTCTCCGACCATCG
CGGCTGAAAGTACGAAAGAGTGCCCGgaccctgcctcttcctcctcccat
acCCCCTCCGAGGCGCGTGACACCAAATTGACACCGGGAACTAGCAgggc
tgcttcctccccccccctcccatgtcCCAACGCCGATAAGCTCACTGCAG
CCATCGAGAAGCCGAAAGCCCGGGCGGGGGATGCCAAAAGTGTCATCCTT
GAGTACATGATTAACGCCGCGCGGCCTTACGGGGCTCAGAATGTTTTTGA
CAACCTACACAAGACCATCGGCAAGGGCACCGTGCAGACCGTGCTGGATC
AACTCGCTGACAGTGGCGCCATCACCCGGAAAGAATTCGGGAAATCCAAG
ATATACGtggccccgcccccagccTTAGACCCGACAGAACTTGCCCGCGA
AACGGCCGCGTTGGAAAGCCGGTGGAAGGCCTtgcaggaagagaaaagcc
agtggacggggagaaaagggagcctggagggcgaggtccgGAGGTTGAAC
CAGGGTCTGGACGATACTGCCTTGGAGACGGCCTTGACGACATTAATAGC
AGAAAATGCGGCGCGCGAGAAGACGCTGGAGAAACTCCGGctgaaagaag
ggaagcgaGAAGGCAGGGCGCCCATGGATAAGCTCCAAATGAAGcgcttg
gaagaggaggtgggatcCTTCAGGAAGGTCTGGGCCGCGCGCAAGCGACa
ggcgatggaggccgtggagtgCGTGGCcgacggggcggggaaaCGGGTGA
TCGACATCATCGATATGATGGGCATAGaaacggacgaggaggcgggtgtc
agcctccctgccttggGTGGAGGGACGTGAATGGACTCGGAAAGCGACTC
TGAGGcaagcagcgaggaggaaacgcagtcgtcgagcgaggaggaagagg
aaggcgaagaggaagaggaggaggaagacgaagaggaagaggaagacgaa
gaggaggacgaaaattTGGATGATGCTTCCCATTCCTCCGGTAGCCAGGT
TTCTCATCCGGCATCTGGCTCGAAAGCCCTCAAAGCGCCCACTCAAAAGC
GTCCCGGACCTGCCCCCGGCGCCGGggacaaaggaaaaaaaagacaggCA
TCTTCCAGTCCGGCTTCCCCTGCCCTGAATTTCTCCAGTAAGGCAGCCAA
AGCAAAGTCGTCGAATCAAAAGCCTGACTACCCTGCCAAGGGCATGGCAA
AGAAGAAAACTGGCAACAGCAGCAAACGCGGTGCGAGTGATATGGAAGTC
GAAGACGGGACGATTGAAGCCGAAAATTCTCCGACCATCGCGGCTGAAAG
TACGAAAGAGTGCCCGgaccctgcctcttcctcctcccatacCCCCTCCG
AGGCGCGTGACACCAAATTGACACCGGGAACTAGCAgggctgcttcctcc
ccccccctcccatgtcCCAACGCCGATAAGCTCACTGCAGCCATCGAGAA
GCCGAAAGCCCGGGCGGGGGATGCCAAAAGTGTCATCCTTGAGTACATGA
TTAACGCCGCGCGGCCTTACGGGGCTCAGAATGTTTTTGACAACCTACAC
AAGACCATCGGCAAGGGCACCGTGCAGACCGTGCTGGATCAACTCGCTGA
CAGTGGCGCCATCACCCGGAAAGAATTCGGGAAATCCAAGATATACGtgg
ccccgcccccagccTTAGACCCGACAGAACTTGCCCGCGAAACGGCCGCG
TTGGAAAGCCGGTGGAAGGCCTtgcaggaagagaaaagccagtggacggg
gagaaaagggagcctggagggcgaggtccgGAGGTTGAACCAGGGTCTGG
ACGATACTGCCTTGGAGACGGCCTTGACGACATTAATAGCAGAAAATGCG
GCGCGCGAGAAGACGCTGGAGAAACTCCGGctgaaagaagggaagcgaGA
AGGCAGGGCGCCCATGGATAAGCTCCAAATGAAGcgcttggaagaggagg
tgggatcCTTCAGGAAGGTCTGGGCCGCGCGCAAGCGACaggcgatggag
gccgtggagtgCGTGGCcgacggggcggggaaaCGGGTGATCGACATCAT
CGATATGATGGGCATAGaaacggacgaggaggcgggtgtcagcctccctg
ccttggGTGGAGGGACGTGA back to top
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