EWM24545.1, cds6129 (CDS) Nannochloropsis gaditana

Overview
NameEWM24545.1
Unique Namecds6129
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:690936..691627 +
Alignment locationCM002467.1:691753..691795 +
Alignment locationCM002467.1:691943..692497 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24545.1
Productpairing protein 2 family protein
Orig transcript idgnl|cribi|Naga_100260g5.1401.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:690936..691627 +
CM002467.1supercontigCM002467.1:691753..691795 +
CM002467.1supercontigCM002467.1:691943..692497 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0000003reproduction
GO:0007049cell cycle
GO:0006259DNA metabolic process
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR010776TBPIP
IPR011991WHTH_DNA-bd_dom
Homology
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|585106054|gb|EWM24545.1| (pairing protein 2 family protein [Nannochloropsis gaditana])

HSP 1 Score: 859.366 bits (2219), Expect = 0.000e+0
Identity = 429/429 (100.00%), Postives = 429/429 (100.00%), Query Frame = 0
Query:    1 MDSESDSEASSEEETQSSSEEEEEGEEEEEEEDEEEEEDEEEDENLDDASHSSGSQVSHPASGSKALKAPTQKRPGPAPGAGDKGKKRQASSSPASPALNFSSKAAKAKSSNQKPDYPAKGMAKKKTGNSSKRGASDMEVEDGTIEAENSPTIAAESTKECPDPASSSSHTPSEARDTKLTPGTSRAASSPPLPCPNADKLTAAIEKPKARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGVSLPALGGGT 429
            MDSESDSEASSEEETQSSSEEEEEGEEEEEEEDEEEEEDEEEDENLDDASHSSGSQVSHPASGSKALKAPTQKRPGPAPGAGDKGKKRQASSSPASPALNFSSKAAKAKSSNQKPDYPAKGMAKKKTGNSSKRGASDMEVEDGTIEAENSPTIAAESTKECPDPASSSSHTPSEARDTKLTPGTSRAASSPPLPCPNADKLTAAIEKPKARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGVSLPALGGGT
Sbjct:    1 MDSESDSEASSEEETQSSSEEEEEGEEEEEEEDEEEEEDEEEDENLDDASHSSGSQVSHPASGSKALKAPTQKRPGPAPGAGDKGKKRQASSSPASPALNFSSKAAKAKSSNQKPDYPAKGMAKKKTGNSSKRGASDMEVEDGTIEAENSPTIAAESTKECPDPASSSSHTPSEARDTKLTPGTSRAASSPPLPCPNADKLTAAIEKPKARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGVSLPALGGGT 429          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|1214679013|gb|OWY98917.1| (Pairing protein, partial [Phytophthora megakarya])

HSP 1 Score: 117.472 bits (293), Expect = 5.451e-27
Identity = 75/216 (34.72%), Postives = 114/216 (52.78%), Query Frame = 0
Query:  211 RAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGVS-LPAL 425
            +A DA++ +L+YM    RPY   NVF+N+H+ I K ++ T+LD L     +  K +GK+KIY      L P     E  ALE + K +  +         S E  +  +   L D  L+ AL  L  E A  EK +E L      + GRAP+   + + L+ +   +R  W +RKR AM+ V  +ADG  K+   ++D++G+ETDEEAG+  LP +
Sbjct:   14 KAADAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTTLLDNLTAKEELVSKTYGKAKIYYMNQSNL-PVPSEAERLALEEQIKVVTADCVASEQELKSAEATLASIKSQLSDADLDAALKQLDEEAATLEKKMETL-----DQPGRAPVSPGRKEALKRKFTKYRTAWVSRKRIAMDGVNQIADGMEKKPKAVLDLVGVETDEEAGIKELPTV 223          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|1173948929|gb|OQR97013.1| (pairing protein 2 family protein [Achlya hypogyna])

HSP 1 Score: 118.242 bits (295), Expect = 1.624e-26
Identity = 83/230 (36.09%), Postives = 120/230 (52.17%), Query Frame = 0
Query:  206 EKPK--ARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVA-----PPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEK--LRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGVS-LPAL 425
            EKPK       A+  +++YM    RPY   NVF+NLH+ IGK  +Q +LD LA+ G I  K +GKS+IY       PPP      LAR   A+E+    +QE +            E   +  GL +   +  LT  ++E+ A+ +TL     RL +  R   AP  K   K    +  ++R  W  RKR  MEAV+ +A+G  K+  D++D++G+ETDE AG+  LPAL
Sbjct:   94 EKPKELVSQSQAEGEVVKYMRQTNRPYSVLNVFENLHRRIGKVMLQKILDALAEKGDIKVKTYGKSQIYYYNQEKLPPPC--AATLARTEEAIEAVSGEVQELERALK--------EAESILHGLSNQMTDAELTQQLSEHTAQAETLSAAVTRLDDPTRAPVAPEKK---KAATAKFTTYRMGWIKRKRIVMEAVDQIAEGMEKKRKDVLDLVGVETDESAGIKELPAL 310          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|301103907|ref|XP_002901039.1| (pairing protein 2 family protein [Phytophthora infestans T30-4] >gi|262101377|gb|EEY59429.1| pairing protein 2 family protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.472 bits (293), Expect = 3.972e-26
Identity = 76/221 (34.39%), Postives = 115/221 (52.04%), Query Frame = 0
Query:  207 KPK-ARAGDAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            KPK   AGDA++ +L+YM    RPY   NVF+N+H+ I K ++   LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  ++  + D   + AL  L  E AA E  +E L      + GRAP+   +   L+ +   +R  W  RKR AM+ V  +ADG  K+   ++D++G+ETDEEAG+ +LP +
Sbjct:   99 KPKPMSAGDAEAAVLDYMRKTNRPYSLLNVFENMHRVIAKPSLTKPLDNLVVKEELASKTYGKAKIYYLNQNNL-PVPSEEERLAIEEQIKTVTAECTASEQELKSAETTLSGISSQISDADFDAALNQLEDEAAALETKVETL-----DQPGRAPVSPGRKNALKRKFTKYRTAWVQRKRIAMDGVNQIADGMEKKPKAVLDLVGVETDEEAGIKTLPTI 313          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|568018835|gb|ETL92998.1| (hypothetical protein L917_08736 [Phytophthora parasitica] >gi|568018836|gb|ETL92999.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 117.087 bits (292), Expect = 4.255e-26
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  +   + D  L+ AL  L  E A  EK +E L      + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIEEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAATLEKKVETL-----DQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|675194163|ref|XP_008905966.1| (hypothetical protein PPTG_11608 [Phytophthora parasitica INRA-310] >gi|675194165|ref|XP_008905967.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568093991|gb|ETN08779.1| hypothetical protein PPTG_11608 [Phytophthora parasitica INRA-310] >gi|568093992|gb|ETN08780.1| hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 117.087 bits (292), Expect = 4.341e-26
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  +   + D  L+ AL  L  E A  EK +E L      + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIEEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAATLEKKVETL-----DQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|567960905|gb|ETK86452.1| (hypothetical protein L915_08896 [Phytophthora parasitica] >gi|567960906|gb|ETK86453.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 117.087 bits (292), Expect = 5.254e-26
Identity = 73/213 (34.27%), Postives = 112/213 (52.58%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  +   + D  L+ AL  L  E A  EK +E L      + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIEEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAATLEKKVETL-----DQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|570984919|gb|ETP44367.1| (hypothetical protein F442_09010 [Phytophthora parasitica P10297] >gi|570984920|gb|ETP44368.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 115.931 bits (289), Expect = 1.259e-25
Identity = 74/213 (34.74%), Postives = 114/213 (53.52%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  +   + D  L+ AL  L  E A    TLEK ++K   + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIEEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAA----TLEK-KVKTLDQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|570327270|gb|ETO75218.1| (hypothetical protein F444_09132 [Phytophthora parasitica P1976] >gi|570327271|gb|ETO75219.1| hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 115.931 bits (289), Expect = 1.419e-25
Identity = 74/213 (34.74%), Postives = 114/213 (53.52%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+E + K +  E +       S E  +  +   + D  L+ AL  L  E A    TLEK ++K   + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIEEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAA----TLEK-KVKTLDQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
BLAST of EWM24545.1 vs. NCBI_GenBank
Match: gi|970629385|gb|KUF76652.1| (Pairing protein 2 family protein [Phytophthora nicotianae] >gi|970659560|gb|KUF97189.1| Pairing protein 2 family protein [Phytophthora nicotianae])

HSP 1 Score: 114.775 bits (286), Expect = 3.165e-25
Identity = 72/213 (33.80%), Postives = 111/213 (52.11%), Query Frame = 0
Query:  214 DAKSVILEYMINAARPYGAQNVFDNLHKTIGKGTVQTVLDQLADSGAITRKEFGKSKIYVAPPPALDPTELARETAALESRWKALQEEKSQWTGRKGSLEGEVRRLNQGLDDTALETALTTLIAENAAREKTLEKLRLKEGKREGRAPMDKLQMKRLEEEVGSFRKVWAARKRQAMEAVECVADGAGKRVIDIIDMMGIETDEEAGV-SLPAL 425
            DA++ +L+YM    RPY   NVF+N+H+ I K ++  +LD L     +  K +GK+KIY      L P     E  A+  + K +  E +       S E  +  +   + D  L+ AL  L  E A  EK +E L      + GRAP+   + + L+ +   FR  W  RKR AM+ +  +ADG  K+   ++D++G+ETDEEAGV +LP +
Sbjct:  109 DAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQNNL-PVPSEEERLAIAEQIKTISAECTASEQELKSAEATLSGITTQISDADLDAALKQLDEEAATLEKKVETL-----DQPGRAPVSPGRKEALKGKFTKFRTAWVQRKRIAMDGINQIADGMEKKPKAVLDLVGVETDEEAGVKALPTI 315          
The following BLAST results are available for this feature:
BLAST of EWM24545.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106054|gb|EWM24545.1|0.000e+0100.00pairing protein 2 family protein [Nannochloropsis ... [more]
gi|1214679013|gb|OWY98917.1|5.451e-2734.72Pairing protein, partial [Phytophthora megakarya][more]
gi|1173948929|gb|OQR97013.1|1.624e-2636.09pairing protein 2 family protein [Achlya hypogyna][more]
gi|301103907|ref|XP_002901039.1|3.972e-2634.39pairing protein 2 family protein [Phytophthora inf... [more]
gi|568018835|gb|ETL92998.1|4.255e-2634.27hypothetical protein L917_08736 [Phytophthora para... [more]
gi|675194163|ref|XP_008905966.1|4.341e-2634.27hypothetical protein PPTG_11608 [Phytophthora para... [more]
gi|567960905|gb|ETK86452.1|5.254e-2634.27hypothetical protein L915_08896 [Phytophthora para... [more]
gi|570984919|gb|ETP44367.1|1.259e-2534.74hypothetical protein F442_09010 [Phytophthora para... [more]
gi|570327270|gb|ETO75218.1|1.419e-2534.74hypothetical protein F444_09132 [Phytophthora para... [more]
gi|970629385|gb|KUF76652.1|3.165e-2533.80Pairing protein 2 family protein [Phytophthora nic... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6144rna6144Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications