rna6140, rna6140 (mRNA) Nannochloropsis gaditana

Overview
Namerna6140
Unique Namerna6140
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length897
Alignment locationCM002467.1:684203..685162 +

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Properties
Property NameValue
Productatp-dependent clp protease proteolytic subunit
Orig transcript idgnl|cribi|Naga_100260g9.1397.mrna
Orig protein idgnl|cribi|Naga_100260g9.1397
GeneCLP
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:684203..685162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CLPgene5931Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6140rna6140-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24541.1cds6125Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6140 ID=rna6140|Name=rna6140|organism=Nannochloropsis gaditana|type=mRNA|length=897bp
ATGTATGACGAGTTGCCCTGGCCTGAAGGCAAAGCTATCGTGCATCCATC
TAGTAGCATGTCGAGGGACCGTCAATACAGGAGAGCACCAACGTTTTTCA
TCTTCTTTCACTGCCTGGGGCTGGTGTCACACGGCACTCGTGCCTTCCTT
CTTCCTCGGCAGCCATTCCTGGGATTTTCTCAGAAACTTGCTTGTTGGGG
CTCACATCCCCTCACGCCATCGCGCCGGGTCTCCTCTGCTCTCCCCCTAC
GGGCCGCCAGTGACACAGGTCCTACAGAGGGAGATTCTATACCTGACCCT
GTCCCTAACTCAGACAATGGCATAGTTGTGGAAGGCCCCATTCGGGCAGA
TGACACGGAGCGGTTTCTGGTGGACATCAGCGTACCGGAGCCTTTGGCCG
CCGAATTGGAGGAGACGAATTTGGTTAAAATTGTGAAGCTAATGTGTAAA
GACGAGGAGGTAAACTGGCTAGCGTGGAAATGCCTCGGCTACCGTTATGT
GCCTACAGAGGGTCGGTGGGACAACACCCGCGTCTTCCCCAAATGGCGGG
CACGATACCCGGATCCACCGGACCTTGTGGGGGTGACTCGCATCTACGAG
AAAGAGGTGGATTTCCCGGTCAAGCGCGCGAACACGGCCCTCGTCCGCTC
CGTCCCCAAGATGTACAAGCAGTCTTTGAAAGAGCTGCTGGCTCCGTACG
GTTTCAAAGGCTACAAGTTTGCGGAGCTCACGCCGAACCGGACACGGAGA
GCGCAGGTCTGCAACTGGCTATTGTATTATAAGCGAGACCTGTGGGGGAT
TTCTTTGGAAGACTTGTTGAAAGCCAAGGAGACGGTCACGCAGGTGACGC
GGGAAGGGGAATCACCGGAGCAACTAGCAAAGAAGATGGTTTATTGA
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protein sequence of rna6140

>rna6140-protein ID=rna6140-protein|Name=rna6140|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MPRLGRSRIMPGQAPLLIVSLLVCCCTAFLLPSLPASSPPALQLQQHPRS
SHIVPLARKGGGGGGDSGGGYAERQEYAPPTDPRLGPPPDLPSLLLHNRI
VYLGMALVPAVTELIIAELLYLNYESQDRPIYMYINSPGISAPDGRAMGF
DTEAFAIADVMSYIRAPIATVCVGQCFGSAAMLLACGTKGQRYSLPNGSI
MLHQPRSLSRGQASDIAIKAREVMRNRRINSEMLAKACGKPLDVIIKDAS
RKRYFSPEEAVEYGLIDQVLESTNDLPMGLIPTKNAEPENDLNMADVRGY
SNPAGYGDSADGNLPTTPF
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mRNA from alignment at CM002467.1:684203..685162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6140 ID=rna6140|Name=rna6140|organism=Nannochloropsis gaditana|type=mRNA|length=960bp|location=Sequence derived from alignment at CM002467.1:684203..685162+ (Nannochloropsis gaditana)
ATGCCAAGATTAGGGCGGTCAAGAATCATGCCTGGCCAGGCCCCTCTTCT
AATTGTGTCGCTGCTGGTCTGCTGTTGCacagctttccttcttccctccc
ttcctgcctcatccccccctgccttgcaGCTTCAGCAGCATCCGCGATCA
AGCCATATCGTGCCATTGGCTCGTaaaggtggtggcggtggaggagactc
GGGGGGTGGGTACGCGGAACGACAGGAATAcgcccctcccacggacCCTC
GCCtaggtcctcctcccgaccttccctccctcctcctccacaatcGCATC
GTCTACCTGGGGATGGCCCTGGTCCCCGCTGTCACGGAGCTCATCATCGC
AGAGCTGCTGTACTTGAACTATGAGAGCCAAGATAGGCCCATATACATGT
ACATCAACAGCCCCGGGATCTCCGCGCCGGACGGGCGCGCCATGGGCTTT
GACACGGAGGCCTTTGCGATCGCAGACGTCATGTCCTACATCCGAGCGCC
GATTGCCACAGTTTGCGTGGGCCAATGCTTCGGTTCGGCGGCCATGCTCT
TGGCCTGCGGGACGAAAGGCCAACGGTACTCGCTGCCCAATGGAAGCATC
ATGTTGCACCAACCCCGGTCTCTGTCAAGGGGCCAGGCCTCGGACATCGC
GATCAAGGCCCGCGAAGTCATGCGCAACCGGCGCATCAACAGCGAGATGC
TGGCCAAGGCATGCGGGAAGCCGTTGGACGTGATCATCAAGGACGCAAGT
CGCAAACGGTATTTTTCGCccgaagaggcggtggaatACGGGCTTATCGA
CCAGGTTTTGGAGAGCACCAATGACTTGCCCATGGGCCTGATTCCCACCA
AGAACGCCGAGCCTGAGAACGACTTGAACATGGCAGACGTGCGCGGGTAC
AGCAACCCGGCGGGGTACGGGGACAGTGCGGATGGAAATTTGCCGACGAC
GCCGTtttag
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Coding sequence (CDS) from alignment at CM002467.1:684203..685162+

>rna6140 ID=rna6140|Name=rna6140|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at CM002467.1:684203..685162+ (Nannochloropsis gaditana)
ATGCCAAGATTAGGGCGGTCAAGAATCATGCCTGGCCAGGCCCCTCTTCT
AATTGTGTCGCTGCTGGTCTGCTGTTGCacagctttccttcttccctccc
ttcctgcctcatccccccctgccttgcaGCTTCAGCAGCATCCGCGATCA
AGCCATATCGTGCCATTGGCTCGTaaaggtggtggcggtggaggagactc
GGGGGGTGGGTACGCGGAACGACAGGAATAcgcccctcccacggacCCTC
GCCtaggtcctcctcccgaccttccctccctcctcctccacaatcGCATC
GTCTACCTGGGGATGGCCCTGGTCCCCGCTGTCACGGAGCTCATCATCGC
AGAGCTGCTGTACTTGAACTATGAGAGCCAAGATAGGCCCATATACATGT
ACATCAACAGCCCCGGGATCTCCGCGCCGGACGGGCGCGCCATGGGCTTT
GACACGGAGGCCTTTGCGATCGCAGACGTCATGTCCTACATCCGAGCGCC
GATTGCCACAGTTTGCGTGGGCCAATGCTTCGGTTCGGCGGCCATGCTCT
TGGCCTGCGGGACGAAAGGCCAACGGTACTCGCTGCCCAATGGAAGCATC
ATGTTGCACCAACCCCGGTCTCTGTCAAGGGGCCAGGCCTCGGACATCGC
GATCAAGGCCCGCGAAGTCATGCGCAACCGGCGCATCAACAGCGAGATGC
TGGCCAAGGCATGCGGGAAGCCGTTGGACGTGATCATCAAGGACGCAAGT
CGCAAACGGTATTTTTCGCccgaagaggcggtggaatACGGGCTTATCGA
CCAGGTTTTGGAGAGCACCAATGACTTGCCCATGGGCCTGATTCCCACCA
AGAACGCCGAGCCTGAGAACGACTTGAACATGGCAGACGTGCGCGGGTAC
AGCAACCCGGCGGGGTACGGGGACAGTGCGGATGGAAATTTGCCGACGAC
GCCGTtttag
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Synonyms
Publications